View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20607_high_7 (Length: 228)
Name: NF20607_high_7
Description: NF20607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20607_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 38620891 - 38621084
Alignment:
| Q |
15 |
cacagacagaaactttaagataaatgcaaataagttattcgcagagtaaagatcaaaactcaggagagttggaccaaataaaacggattaattttaccta |
114 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38620891 |
cacaaacagaaactttaagataaatgcaaataagttattcgcagagtaaagatcaaagctcaggagagttggaccaaataaaactgattaattttaccta |
38620990 |
T |
|
| Q |
115 |
aagattacatcgacattggaaacctgatattttaattttgagtctaaaaaagatccaaacctcgatcctctatagtcaaccttacaatgcagac |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38620991 |
aagattacatcgacattggaaacctgatattttaattttgagtctaaaaaagatccaaacctcgatcctctatagtcaatcttacaatgcagac |
38621084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University