View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20608_high_16 (Length: 277)
Name: NF20608_high_16
Description: NF20608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20608_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 4 - 261
Target Start/End: Complemental strand, 26006538 - 26006275
Alignment:
| Q |
4 |
tcgcaaacaaaagttaaatgcactatcaccgatcttcaaaac------accttttctctccccagtacaacaccacttccttttatgtatgggttcctct |
97 |
Q |
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| T |
26006538 |
tcgcaaacaaaagttaaatgcactatcaccgatcttcaaaacccgaccaccttttctctccgcagtacaacaccacttccttttatgtatgggttcctct |
26006439 |
T |
|
| Q |
98 |
accaaatttaagatcaaaccatcataatggtctggtttaggagatgaggtaattaagaccgtactcattaagtaatccattttaggagtaattataaaac |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26006438 |
accaaatttaagatcaaaccatcataatggtctggtttaggagatgaggtaattaagaccgtactcattaagtaatccattttaggagtaattataaaac |
26006339 |
T |
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| Q |
198 |
actcttcatcacgtgctcattgtctgtttgggtttttcctccactccacaacctcaatccaaag |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26006338 |
actcttcatcacgtgctcattgtctgtttgggtttttcctccactccacaacctcaatccaaag |
26006275 |
T |
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