View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20608_high_23 (Length: 246)
Name: NF20608_high_23
Description: NF20608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20608_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 12778904 - 12778693
Alignment:
| Q |
19 |
acatcctgcaaaaagccaaacatgaaaaattgtaagtcttgtttcatattttaatctatatttcatattcatttttgacgaaaaaactatatttcataat |
118 |
Q |
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| T |
12778904 |
acatcctgcaaaaacccaaacatgaaaaattgtaagtcttgtttcatattttaatctatatttcatattattttttgacgaaaaaactatatttcataat |
12778805 |
T |
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| Q |
119 |
agtgatcactattaattattgctaagctaaatgagaattaaaagttgaaaatgacacatatgaaagagacacnnnnnnngcatctgagttgataagggca |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
12778804 |
agtgatcactattaattattgctaagctaaatgagaattaaaagttgaaaatgacacgtatgaaagagacacaaaaaaagcatctgagttgataagggca |
12778705 |
T |
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| Q |
219 |
gagacatgtttg |
230 |
Q |
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|||||||||||| |
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| T |
12778704 |
gagacatgtttg |
12778693 |
T |
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