View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20608_high_6 (Length: 550)

Name: NF20608_high_6
Description: NF20608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20608_high_6
NF20608_high_6
[»] chr3 (4 HSPs)
chr3 (14-535)||(3138750-3139271)
chr3 (14-535)||(3156485-3156985)
chr3 (14-533)||(3167287-3167806)
chr3 (14-533)||(2022839-2023373)
[»] chr8 (3 HSPs)
chr8 (55-534)||(23852172-23852636)
chr8 (52-147)||(23856930-23857025)
chr8 (406-529)||(23856745-23856868)
[»] chr5 (14 HSPs)
chr5 (82-289)||(1725128-1725344)
chr5 (84-199)||(1739582-1739697)
chr5 (445-531)||(1763480-1763566)
chr5 (84-185)||(1744933-1745034)
chr5 (449-533)||(1760119-1760203)
chr5 (446-533)||(1739068-1739155)
chr5 (445-533)||(1724479-1724567)
chr5 (462-533)||(1744411-1744482)
chr5 (284-413)||(1744522-1744651)
chr5 (78-150)||(1763759-1763831)
chr5 (106-185)||(1715615-1715694)
chr5 (219-289)||(1724723-1724796)
chr5 (143-198)||(1739412-1739467)
chr5 (284-336)||(1739256-1739308)
[»] chr7 (6 HSPs)
chr7 (369-534)||(7491113-7491278)
chr7 (316-533)||(9011903-9012123)
chr7 (105-198)||(7490840-7490933)
chr7 (369-534)||(7498834-7498999)
chr7 (104-198)||(7484085-7484179)
chr7 (16-199)||(9011621-9011795)


Alignment Details
Target: chr3 (Bit Score: 482; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 14 - 535
Target Start/End: Original strand, 3138750 - 3139271
Alignment:
Q  14 gattgatcatgaatatcatcatcattggttgaattagaagccacaataatttgcttttccatgtttgagtttgaaattgtagcaacctttgtagaagaat 113  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3138750 gattgatcatgaatatcatcatcattggtagaattaggagccacaataatttgcttttccatgtttgagtttgaaattgtagcaacctttgtagaagaat 3138849  T
Q  114 ctcccaattctaaaatagcaccaattttattatttgtaccatcttcgatctttgaagtagttgcaccaccaatacctagatttccaatcacgctattacc 213  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3138850 ctcccaattctaaaatagcaccaattttattatatgtaccatattcgatctttgaagtagttgcaccaccaatacctagatttccaatcacgctattacc 3138949  T
Q  214 aacccccatatttctcaatgacacaagagaagggtttaacatctcttgcaacaaagcactatgactatacccaaaactatgtggagtaattctagggtta 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3138950 aacccccatatttctcaatgacacaagagaagggtttaacatctcttgcaacaaagcactatgactatacccaaaactatgtggagtaattctagggtta 3139049  T
Q  314 aaataaggtggtttttgaatcattgactcggatctaaccccaagtgacctataactataaggtgtaaaaagagtacttggataactaagataaggattaa 413  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3139050 aaataaggtggtttttgaatcattgactctgatctaaccccaagtgacctataactataaggtgtaaaaagagtacttggataactaagataaggattaa 3139149  T
Q  414 agtaaggttgcccaaaacttaaagcaccaccatcatacctttgttgacgttgcttttctaacgcccgttccgccttatgcgcgttctgatgtcctcccaa 513  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  3139150 agtaaggctgcccaaaacttaaagcactaccatcatacctttgttgacgttgcttttctaatgcccgttccgccttatgtgcgttctgatgtcctcccaa 3139249  T
Q  514 cgcttgtgaagtagaaaattgt 535  Q
    ||| ||||||||||||||||||    
T  3139250 cgcctgtgaagtagaaaattgt 3139271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 14 - 535
Target Start/End: Original strand, 3156485 - 3156985
Alignment:
Q  14 gattgatcatgaatatcatcatcattggttgaattagaagccacaataatttgcttttccatgtttgagtttgaaattgtagcaacctttgtagaagaat 113  Q
    |||||||||||||||||||| |   |||| ||| ||| ||||||||||||||||||||| ||||||||||||||| ||| |||||| |||||||||||||    
T  3156485 gattgatcatgaatatcatctt---tggtagaagtaggagccacaataatttgcttttctatgtttgagtttgaacttgcagcaacatttgtagaagaat 3156581  T
Q  114 ctcccaattctaaaatagcaccaattttattatttgtaccatcttcgatctttgaagtagttgcaccaccaatacctagatttccaatcacgctattacc 213  Q
    |||| |||| || ||||||||| ||||||||||||||||||||||| ||| |||||||| |||||||||||||| |||| ||||||| | |||| |||||    
T  3156582 ctcctaattttagaatagcacctattttattatttgtaccatcttcaatccttgaagtacttgcaccaccaatagctaggtttccaaacccgctgttacc 3156681  T
Q  214 aacccccatatttctcaatgacacaagagaagggtttaacatctcttgcaacaaagcactatgactatacccaaaactatgtggagtaattctagggtta 313  Q
    | ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||| ||||| |||||  ||||| ||    
T  3156682 acccctcatatttctcaatgacacaagagaagggtttaagatctcttgcaacaaagcactatgacggtacccaaaactgtgtggggtaatcttagggcta 3156781  T
Q  314 aaataaggtggtttttgaatcattgactcggatctaaccccaagtgacctataactataaggtgtaaaaagagtacttggataactaagataaggattaa 413  Q
    | ||||||||||||||||||||||||||||| ||| ||||| ||||||||||||   ||||||  |||||||||                  ||||| ||    
T  3156782 atataaggtggtttttgaatcattgactcggttctgaccccgagtgacctataatcgtaaggtcgaaaaagagt------------------aggataaa 3156863  T
Q  414 agtaaggttgcccaaaacttaaagcaccaccatcatacctttgttgacgttgcttttctaacgcccgttccgccttatgcgcgttctgatgtcctcccaa 513  Q
    |||||| |||||| |||||| ||||||   |||||||||||||||  |||||||||||||| || |||||||||||||| |||||||| |||||||||||    
T  3156864 agtaagattgccccaaacttgaagcactgtcatcatacctttgtttccgttgcttttctaaagcacgttccgccttatgagcgttctggtgtcctcccaa 3156963  T
Q  514 cgcttgtgaagtagaaaattgt 535  Q
    ||||||||||||||||||||||    
T  3156964 cgcttgtgaagtagaaaattgt 3156985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 14 - 533
Target Start/End: Complemental strand, 3167806 - 3167287
Alignment:
Q  14 gattgatcatgaatatcatcatcattggttgaattagaagccacaataatttgcttttccatgtttgagtttgaaattgtagcaacctttgtagaagaat 113  Q
    ||||||||||||||||||| ||   |||  ||| ||| ||||||||| || |  ||||| |  |||||||||||| |||||||||| |||||||||||||    
T  3167806 gattgatcatgaatatcattat---tggaagaaataggagccacaatgatatctttttctacctttgagtttgaacttgtagcaacatttgtagaagaat 3167710  T
Q  114 ctcccaattctaaaatagcaccaattttattatttgtaccatcttcgatctttgaagtagttgcaccaccaatacctagatttccaatcacgctattacc 213  Q
    |||| |||| || ||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||| ||| |||||| | |   |||       
T  3167709 ctcctaattttagaatagcaccaattttattatttgtaccatcttctatccttgaagtacttgcaccaccaataccaagaattccaaccccatgatt--- 3167613  T
Q  214 aacccccatatttctcaatgacacaagagaagggtttaacatctcttgca---acaaagcactatgactatacc---------caaaactatgtggagta 301  Q
          | ||||||||||    ||||| ||||||||||| ||||||||||   | ||||||| || |  |||||         |||||||||||||||||    
T  3167612 ------cttatttctcaaactaacaagtgaagggtttaatatctcttgcaaagataaagcaccattatcatacccaaaagggccaaaactatgtggagta 3167519  T
Q  302 attctagggttaaaataaggtggtttttgaatcattgactcggatctaaccccaagtgacctataactataaggtgtaaaaagagtacttggataactaa 401  Q
    || |||||||||| ||||| ||| ||||||||||| || ||   ||||   |||||   | |||||  | | ||||||||||||||| ||||||||||||    
T  3167518 atcctagggttaatataagatggcttttgaatcatggattccattctagttccaagccccttataataagagggtgtaaaaagagtatttggataactaa 3167419  T
Q  402 gataaggattaaagtaaggttgcccaaaacttaaagcaccaccatcatacctttgttgacgttgcttttctaacgcccgttccgccttatgcgcgttctg 501  Q
     |||||| ||||||||||||||||| ||||  ||| |||||   |||||| |||||| |||||| |||||||| || ||||| |||||||| || |||||    
T  3167418 aataagggttaaagtaaggttgccctaaaccaaaaacaccattttcatacttttgtttacgttgtttttctaaggcacgttcagccttatgggcattctg 3167319  T
Q  502 atgtcctcccaacgcttgtgaagtagaaaatt 533  Q
    ||||||||| ||||||||||| ||||||||||    
T  3167318 atgtcctcctaacgcttgtgatgtagaaaatt 3167287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 14 - 533
Target Start/End: Complemental strand, 2023373 - 2022839
Alignment:
Q  14 gattgatcatgaatatcatcatcattggttgaattagaagccacaataatttgcttttccatgtttgagtttgaaattgtagcaacctttgtagaagaat 113  Q
    ||||||||||||||||||||||   |||||||| | | ||||| |||||||| |||||| | ||||||||||||| |||| | ||| |||||||||||||    
T  2023373 gattgatcatgaatatcatcat---tggttgaagtgggagccataataattttcttttctaggtttgagtttgaacttgttgtaacatttgtagaagaat 2023277  T
Q  114 ctcccaattctaaaatagcaccaattttattatttgtaccatcttcgatctttgaagtagttgcaccaccaatacctagatttccaatcacg------ct 207  Q
    || | || | || | ||| ||||||||||||||||  ||||||||| ||| || ||||||||||| | ||  |||||||| |||||| |         ||    
T  2023276 cttcaaactttagattagtaccaattttattattttcaccatcttcaatccttaaagtagttgcatccccggtacctagaattccaaccctagaattact 2023177  T
Q  208 attaccaacccccatatttctcaatgacacaagagaagggtttaacatctcttgcaa---caaagcactatgactatacccaaaa---------ctatgt 295  Q
    |||||   || |||||||||||||    ||||||||||||||||| |||||||||||   |||| ||| || || ||||||||||         ||||||    
T  2023176 attactgccctccatatttctcaaactaacaagagaagggtttaatatctcttgcaaacccaaaccaccattaccatacccaaaaggtctaaaactatgt 2023077  T
Q  296 ggagtaattctagggttaaaataaggtggtttttgaatcattgactcggatctaaccccaagtgacctataactataaggtgtaaaaagagtacttggat 395  Q
    ||||||||||||||||||| | || |||||||||||||||| || ||   ||||  ||||| ||  ||| ||  |    |||||||||||||||||||||    
T  2023076 ggagtaattctagggttaataaaaagtggtttttgaatcatggattccattctagtcccaattgcgctaaaataagggcgtgtaaaaagagtacttggat 2022977  T
Q  396 aactaagataaggattaaagtaaggttgcccaaaacttaaagcaccaccatcatacctttgttgacgttgcttttctaacgcccgttccgccttatgcgc 495  Q
    |||||| |||||| ||||||| ||||||||| ||||  ||||||||||  ||||||||||||| |||||| ||||||||||  ||||| |||||||| ||    
T  2022976 aactaaaataagggttaaagtgaggttgccctaaaccaaaagcaccactttcatacctttgtttacgttgtttttctaacgtacgttcagccttatgggc 2022877  T
Q  496 gttctgatgtcctcccaacgcttgtgaagtagaaaatt 533  Q
     ||||| |||||||| || ||||| |||||||||||||    
T  2022876 attctggtgtcctcctaaggcttgcgaagtagaaaatt 2022839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 218; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 55 - 534
Target Start/End: Complemental strand, 23852636 - 23852172
Alignment:
Q  55 cacaataatttgcttttccatgtttgagtttgaaattgtagcaacctttgtagaagaatctcccaattctaaaatagcaccaattttattatt---tgta 151  Q
    |||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||   ||||    
T  23852636 cacaataatttgcttttccatgtttgagtttgaacttgtagcaatatttgtagaagaatctcccaattttaaaatagcaccaattttattattatttgta 23852537  T
Q  152 ccatcttcgatctttgaagtagttgcaccaccaatacctagatttccaatcacgctattaccaacccccatatttctcaatgacacaagagaagggttta 251  Q
    |||||||||||  |||||||||||||||| ||||||||||| ||||||| | | ||||||| | |||||||||||||||||||||| |||||||| ||||    
T  23852536 ccatcttcgattcttgaagtagttgcaccgccaatacctaggtttccaaaccctctattactaccccccatatttctcaatgacacgagagaaggattta 23852437  T
Q  252 acatctcttgcaacaaagcactatgactatacccaaaactatgtggagtaattctagggttaaaataaggtggtttttgaatcattgactcggatctaac 351  Q
    | || |||||||||||||||||||| || ||||||||||| ||||| |||||  ||||| |||||||| |||||||||||||||||||||||| |||||     
T  23852436 agatatcttgcaacaaagcactatggctgtacccaaaactgtgtggggtaatcttagggctaaaataatgtggtttttgaatcattgactcggttctaat 23852337  T
Q  352 cccaagtgacctataactataaggtgtaaaaagagtacttggataactaagataaggattaaagtaaggttgcccaaaacttaaagcaccaccatcatac 451  Q
    ||| | ||||||||||  |||||||  |||||||||                  ||  |||||||||| |||||| |||| |||| ||||| ||||||||    
T  23852336 cccgattgacctataatcataaggtcgaaaaagagt------------------agagttaaagtaagattgccctaaacctaaaacaccatcatcatac 23852255  T
Q  452 ctttgttgacgttgcttttctaacgcccgttccgccttatgcgcgttctgatgtcctcccaacgcttgtgaagtagaaaattg 534  Q
    |||||||  |||||||||||||| |  |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||    
T  23852254 ctttgtttccgttgcttttctaaagtacgttccgccttatgagcgttctggtgtcctcccaacgcttgagaagtagaaaattg 23852172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 23857025 - 23856930
Alignment:
Q  52 agccacaataatttgcttttccatgtttgagtttgaaattgtagcaacctttgtagaagaatctcccaattctaaaatagcaccaattttattatt 147  Q
    |||||||||||||| |||||| |||||||||||| || ||||   ||  |||||||||||| ||||||||| ||||||||||||||||||||||||    
T  23857025 agccacaataattttcttttctatgtttgagtttaaacttgttttaatatttgtagaagaaactcccaattttaaaatagcaccaattttattatt 23856930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 406 - 529
Target Start/End: Complemental strand, 23856868 - 23856745
Alignment:
Q  406 aggattaaagtaaggttgcccaaaacttaaagcaccaccatcatacctttgttgacgttgcttttctaacgcccgttccgccttatgcgcgttctgatgt 505  Q
    |||||||||||||| || |   |||| ||||| |||| ||||||| |||||||  |||||||||||||| |   |||||| |||||| |||||||| |||    
T  23856868 aggattaaagtaagatttctttaaacctaaagtaccatcatcatatctttgtttgcgttgcttttctaaagtatgttccgtcttatgagcgttctggtgt 23856769  T
Q  506 cctcccaacgcttgtgaagtagaa 529  Q
    |||||||||| |||||||||||||    
T  23856768 cctcccaacgattgtgaagtagaa 23856745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 82 - 289
Target Start/End: Complemental strand, 1725344 - 1725128
Alignment:
Q  82 gtttgaaattgtagcaacctttgtagaagaatctcccaattctaaaatagcaccaattttattatttgtaccatcttcgatctttgaagtagttgcacca 181  Q
    ||||||| |||||||||| | | |||||||||||||| |||  ||||||||||||||||||||||||||  ||||||| ||| ||||||||||| |||||    
T  1725344 gtttgaacttgtagcaacatgtttagaagaatctccccatttaaaaatagcaccaattttattatttgtgtcatcttcaatccttgaagtagttccacca 1725245  T
Q  182 ccaatacctagatttccaatcacgctattaccaacccccatatttctcaa--tgaca----caagagaagggtttaacatctcttgca---acaaagcac 272  Q
    |||||||||||| |||||  | |  ||| || |  | |||||||||||||  | |||     ||||||||||||||||||||||||||   |||||||||    
T  1725244 ccaatacctagaattccagccccattataactactctccatatttctcaaactaacaagaggaagagaagggtttaacatctcttgcaaacacaaagcac 1725145  T
Q  273 tatgactatacccaaaa 289  Q
     || |||||||||||||    
T  1725144 cattactatacccaaaa 1725128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 84 - 199
Target Start/End: Complemental strand, 1739697 - 1739582
Alignment:
Q  84 ttgaaattgtagcaacctttgtagaagaatctcccaattctaaaatagcaccaattttattatttgtaccatcttcgatctttgaagtagttgcaccacc 183  Q
    ||||| |||||||||| |||||||||||||||||  ||| || |||||||||||| || | ||| ||||||||||| ||| | |||| ||||||||||||    
T  1739697 ttgaacttgtagcaacatttgtagaagaatctccagattttataatagcaccaatcttgtcattcgtaccatcttcaatcctcgaagcagttgcaccacc 1739598  T
Q  184 aatacctagatttcca 199  Q
    ||  |||||| |||||    
T  1739597 aaatcctagaattcca 1739582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 445 - 531
Target Start/End: Original strand, 1763480 - 1763566
Alignment:
Q  445 atcatacctttgttgacgttgcttttctaacgcccgttccgccttatgcgcgttctgatgtcctcccaacgcttgtgaagtagaaaa 531  Q
    |||||||||||||| ||||||||||||||| ||  ||||||||||||| || || ||||| ||||| ||||  ||||||||||||||    
T  1763480 atcatacctttgtttacgttgcttttctaatgcatgttccgccttatgagctttttgatgccctcctaacgtatgtgaagtagaaaa 1763566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 84 - 185
Target Start/End: Complemental strand, 1745034 - 1744933
Alignment:
Q  84 ttgaaattgtagcaacctttgtagaagaatctcccaattctaaaatagcaccaattttattatttgtaccatcttcgatctttgaagtagttgcaccacc 183  Q
    ||||| |||| ||||| ||||||||||||||||| ||||    |||||||||||| || |||||  |||||||||| ||| |||||| ||||||||||||    
T  1745034 ttgaacttgtggcaacatttgtagaagaatctccaaatttagtaatagcaccaatcttgttattcataccatcttcaatccttgaagcagttgcaccacc 1744935  T
Q  184 aa 185  Q
    ||    
T  1744934 aa 1744933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 449 - 533
Target Start/End: Complemental strand, 1760203 - 1760119
Alignment:
Q  449 tacctttgttgacgttgcttttctaacgcccgttccgccttatgcgcgttctgatgtcctcccaacgcttgtgaagtagaaaatt 533  Q
    |||||||||| ||||||||||||||| || |||||||||||||  || || || || ||||||||||| |||||||||| |||||    
T  1760203 tacctttgtttacgttgcttttctaatgcacgttccgccttataagcattttggtgccctcccaacgcctgtgaagtagtaaatt 1760119  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 446 - 533
Target Start/End: Complemental strand, 1739155 - 1739068
Alignment:
Q  446 tcatacctttgttgacgttgcttttctaacgcccgttccgccttatgcgcgttctgatgtcctcccaacgcttgtgaagtagaaaatt 533  Q
    ||||||||||||| | |||||||||  ||||| ||||| |||||||| ||||| || ||||| || |||||||| |||||||||||||    
T  1739155 tcatacctttgtttaagttgcttttgcaacgcacgttctgccttatgagcgttttggtgtccacctaacgcttgcgaagtagaaaatt 1739068  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 445 - 533
Target Start/End: Complemental strand, 1724567 - 1724479
Alignment:
Q  445 atcatacctttgttgacgttgcttttctaacgcccgttccgccttatgcgcgttctgatgtcctcccaacgcttgtgaagtagaaaatt 533  Q
    |||||||||| ||| ||||||||||| ||| || ||||| |||||||| || || || || ||||| ||||| ||||||||||||||||    
T  1724567 atcataccttagtttacgttgcttttttaatgcacgttctgccttatgagcattttggtgccctcctaacgcctgtgaagtagaaaatt 1724479  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 462 - 533
Target Start/End: Complemental strand, 1744482 - 1744411
Alignment:
Q  462 gttgcttttctaacgcccgttccgccttatgcgcgttctgatgtcctcccaacgcttgtgaagtagaaaatt 533  Q
    ||||||||| ||| || ||||||| |||||| ||||| || ||||| || ||||||||||||||||||||||    
T  1744482 gttgcttttgtaatgcacgttccgtcttatgagcgttttggtgtccacctaacgcttgtgaagtagaaaatt 1744411  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 284 - 413
Target Start/End: Complemental strand, 1744651 - 1744522
Alignment:
Q  284 ccaaaactatgtggagtaattctagggttaaaataaggtggtttttgaatcattgactcggatctaaccccaagtgacctataactataaggtgtaaaaa 383  Q
    ||||||| |||||| ||||| |  ||||||| ||||| ||||||||||||||| || ||   |||||| || |||| || |||| ||   ||||||||||    
T  1744651 ccaaaaccatgtggggtaatcccggggttaatataagatggtttttgaatcatagattccattctaacaccgagtgccccataattagggggtgtaaaaa 1744552  T
Q  384 gagtacttggataactaagataaggattaa 413  Q
    ||||  |||||||||||| |||||| ||||    
T  1744551 gagtgtttggataactaaaataagggttaa 1744522  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 1763831 - 1763759
Alignment:
Q  78 ttgagtttgaaattgtagcaacctttgtagaagaatctcccaattctaaaatagcaccaattttattatttgt 150  Q
    ||||||| ||| |||||||||| ||||  ||||||||||||||||  |||| | ||||||| |||||||||||    
T  1763831 ttgagttagaacttgtagcaacgtttgaggaagaatctcccaatttaaaaaaaacaccaatattattatttgt 1763759  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 185
Target Start/End: Original strand, 1715615 - 1715694
Alignment:
Q  106 agaagaatctcccaattctaaaatagcaccaattttattatttgtaccatcttcgatctttgaagtagttgcaccaccaa 185  Q
    |||||||||||| |||| || || | | |||||||| ||||| ||||||||||| ||||||||| || ||||||| ||||    
T  1715615 agaagaatctccaaattttataagaactccaattttgttattggtaccatcttcaatctttgaaataattgcacccccaa 1715694  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 289
Target Start/End: Complemental strand, 1724796 - 1724723
Alignment:
Q  219 ccatatttctcaatgacacaagagaagggtttaacatctcttgcaa---caaagcactatgactatacccaaaa 289  Q
    |||||||||||||    |||||||||||||||||||||||||||||   |||||||| || | |||||||||||    
T  1724796 ccatatttctcaaactaacaagagaagggtttaacatctcttgcaaacccaaagcaccattattatacccaaaa 1724723  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 1739467 - 1739412
Alignment:
Q  143 ttatttgtaccatcttcgatctttgaagtagttgcaccaccaatacctagatttcc 198  Q
    ||||||||||||||||| ||| |||||||||||| ||||||||  |||||| ||||    
T  1739467 ttatttgtaccatcttcaatccttgaagtagttgaaccaccaaatcctagaattcc 1739412  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 336
Target Start/End: Complemental strand, 1739308 - 1739256
Alignment:
Q  284 ccaaaactatgtggagtaattctagggttaaaataaggtggtttttgaatcat 336  Q
    ||||||| |||||| | ||| |||||||||| ||||| |||||||||||||||    
T  1739308 ccaaaaccatgtggggcaatcctagggttaatataagatggtttttgaatcat 1739256  T

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Target: chr7 (Bit Score: 66; Significance: 6e-29; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 369 - 534
Target Start/End: Original strand, 7491113 - 7491278
Alignment:
Q  369 tataaggtgtaaaaagagtacttggataactaagataaggattaaagtaaggttgcccaaaacttaaagcaccaccatcatacctttgttgacgttgctt 468  Q
    |||||||||||||||||||||| | |||| | | |||||| ||||||| || |||||| |||| |||||||||| |||||||||||| || |||||| ||    
T  7491113 tataaggtgtaaaaagagtactagaataattgaaataaggtttaaagtgagattgccctaaacctaaagcaccagcatcatacctttctttacgttgttt 7491212  T
Q  469 ttctaacgcccgttccgccttatgcgcgttctgatgtcctcccaacgcttgtgaagtagaaaattg 534  Q
    ||| ||||| |||||||||||||| || || ||||| ||||| ||  ||||  |||||||||||||    
T  7491213 ttccaacgcacgttccgccttatgggcattttgatgccctcctaagccttggaaagtagaaaattg 7491278  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 316 - 533
Target Start/End: Original strand, 9011903 - 9012123
Alignment:
Q  316 ataaggtggtttttgaatcattgactcggatctaaccccaagtgacctataactataaggtgtaaaaagagtacttggataactaagataaggattaaag 415  Q
    |||||||||||||||||||||||| ||   |||||||||  ||  ||||||| ||||||||||||||||||||||  ||||||||| |||||| |||||     
T  9011903 ataaggtggtttttgaatcattgattccattctaaccccgggtagcctataattataaggtgtaaaaagagtactacgataactaaaataagggttaaaa 9012002  T
Q  416 ta---aggttgcccaaaacttaaagcaccaccatcatacctttgttgacgttgcttttctaacgcccgttccgccttatgcgcgttctgatgtcctccca 512  Q
     |   ||||||||| |||| ||||| |     ||||||||||||||||| ||||||||| || || ||||||    |||| || || || || || ||||    
T  9012003 gaaggaggttgccccaaacctaaaggattttgatcatacctttgttgacattgcttttcaaatgcacgttcctttctatgggcattttggtgcccaccca 9012102  T
Q  513 acgcttgtgaagtagaaaatt 533  Q
    ||||||||| |||||||||||    
T  9012103 acgcttgtgcagtagaaaatt 9012123  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 105 - 198
Target Start/End: Original strand, 7490840 - 7490933
Alignment:
Q  105 tagaagaatctcccaattctaaaatagcaccaattttattatttgtaccatcttcgatctttgaagtagttgcaccaccaatacctagatttcc 198  Q
    ||||||||||||| | || || ||||||||||||||||||||||||||||||||| ||  |||||||| |||| ||||||| ||||||| ||||    
T  7490840 tagaagaatctccaagttttagaatagcaccaattttattatttgtaccatcttcaattcttgaagtacttgctccaccaaaacctagagttcc 7490933  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 534
Target Start/End: Original strand, 7498834 - 7498999
Alignment:
Q  369 tataaggtgtaaaaagagtacttggataactaagataaggattaaagtaaggttgcccaaaacttaaagcaccaccatcatacctttgttgacgttgctt 468  Q
    |||||||||||||||||||||| | |||| | | |||||| ||||||| || |||||| |||| |||||||||| |||||||||||| ||   |||| ||    
T  7498834 tataaggtgtaaaaagagtactagaataatttaaataaggtttaaagtgagattgccctaaacctaaagcaccagcatcatacctttcttttagttgttt 7498933  T
Q  469 ttctaacgcccgttccgccttatgcgcgttctgatgtcctcccaacgcttgtgaagtagaaaattg 534  Q
    ||| || || ||||| |||||||| || || ||||| ||||| ||  ||||  |||||||||||||    
T  7498934 ttccaatgcacgttctgccttatgggcattttgatgccctcctaagccttggaaagtagaaaattg 7498999  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 104 - 198
Target Start/End: Original strand, 7484085 - 7484179
Alignment:
Q  104 gtagaagaatctcccaattctaaaatagcaccaattttattatttgtaccatcttcgatctttgaagtagttgcaccaccaatacctagatttcc 198  Q
    ||||||||||| || | || || ||||||||||||||||||||||||||||||||  ||  |||||||| |||| ||||||| ||||||| ||||    
T  7484085 gtagaagaatcaccaagttttagaatagcaccaattttattatttgtaccatctttaattcttgaagtacttgctccaccaaaacctagagttcc 7484179  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 9011621 - 9011795
Alignment:
Q  16 ttgatcatgaatatcatcatcattggttgaattagaagccacaataatttgcttttccatgtttgagtttgaaattgtagcaacctttgtagaagaatct 115  Q
    ||||| ||||||||||||| |   ||| ||| ||| |||||| ||||||| ||| ||  ||||||||||||||  || |||||  |||||| ||||||||    
T  9011621 ttgattatgaatatcatcagc---ggtagaagtaggagccacgataatttccttgtctttgtttgagtttgaacatgaagcaatatttgtaaaagaatct 9011717  T
Q  116 cccaattctaaaatagcaccaattttattatttgtaccatcttcgatctttgaagtagttgcaccaccaatacctagatttcca 199  Q
    ||  | | || |||||| | ||||||||||      |||||||| ||||||||| |||||||||||||||  |||||| |||||    
T  9011718 ccataatttagaatagccctaattttatta------ccatcttcaatctttgaactagttgcaccaccaaaccctagaattcca 9011795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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