View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20608_high_8 (Length: 478)
Name: NF20608_high_8
Description: NF20608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20608_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 18 - 461
Target Start/End: Complemental strand, 35263324 - 35262880
Alignment:
| Q |
18 |
atgaaatatgtgtagtgtaggaatgtt-agttttggtaggctccaattctcataccatacccatgtgttatgagtacgtactacatcacaaataaaatgt |
116 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35263324 |
atgaaatatgtgtagtgtaggaatgtttagttttggtaggctccaattctcataccatacccatgtgttatgagtacgtactacatcacaaataaaatgt |
35263225 |
T |
|
| Q |
117 |
gtataattatatagtataaagtattttaactttaatgcaatgtatataaattgtgtctaatacagacaaagacaagctcgtggtattgcagtgtagtcta |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35263224 |
gtataattatatagtataaagtattttaactttaatgcaatgtatataaattgtgtctaatacagacgaagacaagctcgtggtattgcagtgtagtcta |
35263125 |
T |
|
| Q |
217 |
ttgtttgtattgtaagctactagtacacttactaaggaataaagacagctactcaaggacgatgttcatgttcaatatgtttcatttcggtggataagaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35263124 |
ttgtttgtattgtaagctactagtacacttactaaggaataaagacagctactcaaggacgatgttcatgttcaatatgtttcatttcggtggataagaa |
35263025 |
T |
|
| Q |
317 |
agaaaagaactactcaaatcgaataaaagaatatcagcaaatatttttaagataataacgatcaaatcttattctactaagttggtaatgatttttcaat |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
35263024 |
agaaaagaactactcaaatcgaataaaagaatatcagcaaatatttttaagataataacaatcaaatcttattctactgagttgataatgatttttcaat |
35262925 |
T |
|
| Q |
417 |
agatcagtactacattcgtccaaacacgtttttatgtaaagttat |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35262924 |
agatcagtactacattcgtccaaacacgttttgctgtaaagttat |
35262880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University