View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20608_low_1 (Length: 743)

Name: NF20608_low_1
Description: NF20608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20608_low_1
NF20608_low_1
[»] chr1 (4 HSPs)
chr1 (206-347)||(37183192-37183332)
chr1 (205-346)||(42097393-42097534)
chr1 (552-613)||(37182919-37182980)
chr1 (705-735)||(37182791-37182821)
[»] chr3 (2 HSPs)
chr3 (207-346)||(51830115-51830253)
chr3 (705-735)||(51831761-51831791)
[»] chr2 (1 HSPs)
chr2 (291-346)||(15227273-15227328)
[»] chr6 (1 HSPs)
chr6 (206-267)||(26545792-26545853)
[»] chr7 (1 HSPs)
chr7 (1-41)||(21477520-21477560)
[»] chr4 (2 HSPs)
chr4 (552-613)||(23505898-23505959)
chr4 (206-243)||(23506332-23506369)


Alignment Details
Target: chr1 (Bit Score: 102; Significance: 3e-50; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 206 - 347
Target Start/End: Complemental strand, 37183332 - 37183192
Alignment:
Q  206 ttggagattcccctttgtaatttagagattctttggttaacacccccaagcccatctgactgtacaaagaagatgatttggcgtgctgatcgggtaaaaa 305  Q
    |||||||||  || |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||    
T  37183332 ttggagattttcccttgtaatttaaatattctttggttaacacccccaagcccatctgactgtacaaagaagatgatttgacgtg-tgattgggtaaaaa 37183234  T
Q  306 tgcatagttggcacgctgagttggaattttataattcttttc 347  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  37183233 tgcaaagttggcacgctgagttggaattttataattcttttc 37183192  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 205 - 346
Target Start/End: Original strand, 42097393 - 42097534
Alignment:
Q  205 attggagattcccctttgtaatttagagattctttggtta-acacccccaagcccatctgactgtacaaagaagatgatttggcgtgctgatcgggtaaa 303  Q
    |||||||||||||| |||||||||| |||||||||||||  | |||| ||| ||||||||||||| || | | | |||  |||| ||||||  ||  |||    
T  42097393 attggagattcccccttgtaatttaaagattctttggttttagaccctcaa-cccatctgactgtgcagaaacgctgacgtggcatgctgactggaaaaa 42097491  T
Q  304 aatgcatagttggcacgctgagttggaattttataattctttt 346  Q
    | |||||| ||||||||||||||||||||||||||||||||||    
T  42097492 attgcatatttggcacgctgagttggaattttataattctttt 42097534  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 552 - 613
Target Start/End: Complemental strand, 37182980 - 37182919
Alignment:
Q  552 aacaacaacacaatcctttaacaaagtcactcacctttccaaattcatcatcttccttctat 613  Q
    ||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||    
T  37182980 aacaacaacacaatcctttaacaaagtcattcatcttttcaaattcatcatcttccttctat 37182919  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 705 - 735
Target Start/End: Complemental strand, 37182821 - 37182791
Alignment:
Q  705 aacaacaaccttatgatttcctcttcttctc 735  Q
    |||||||||||||||||||||||||||||||    
T  37182821 aacaacaaccttatgatttcctcttcttctc 37182791  T

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Target: chr3 (Bit Score: 100; Significance: 4e-49; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 207 - 346
Target Start/End: Original strand, 51830115 - 51830253
Alignment:
Q  207 tggagattcccctttgtaatttagagattctttggttaacacccccaagcccatctgactgtacaaagaagatgatttggcgtgctgatcgggtaaaaat 306  Q
    |||||||| ||| |||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  51830115 tggagatttccccttgtaatttaaagattctttggttaacaccccaaa-cccatctgactgtacaaagaagatgatttggcgtgctgaccgggtaaaaat 51830213  T
Q  307 gcatagttggcacgctgagttggaattttataattctttt 346  Q
    ||||| ||| ||||||||||||||||||| ||||||||||    
T  51830214 gcataattgacacgctgagttggaattttctaattctttt 51830253  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 705 - 735
Target Start/End: Original strand, 51831761 - 51831791
Alignment:
Q  705 aacaacaaccttatgatttcctcttcttctc 735  Q
    |||||||||||||||||||||||||||||||    
T  51831761 aacaacaaccttatgatttcctcttcttctc 51831791  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 291 - 346
Target Start/End: Complemental strand, 15227328 - 15227273
Alignment:
Q  291 ctgatcgggtaaaaatgcatagttggcacgctgagttggaattttataattctttt 346  Q
    |||| ||| ||||| |||||| ||||||||||||||||||||||||||||||||||    
T  15227328 ctgaccggttaaaattgcatacttggcacgctgagttggaattttataattctttt 15227273  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 267
Target Start/End: Complemental strand, 26545853 - 26545792
Alignment:
Q  206 ttggagattcccctttgtaatttagagattctttggttaacacccccaagcccatctgactg 267  Q
    ||||||||||||| ||||||  || ||||||||||||| ||||||| ||| |||||||||||    
T  26545853 ttggagattcccccttgtaaaataaagattctttggtttacacccctaaggccatctgactg 26545792  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 21477520 - 21477560
Alignment:
Q  1 agcccttccttatttctctgtggtactcttgttacgcttgt 41  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  21477520 agcccttccttatttctctccggtactcttgttacgcttgt 21477560  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 552 - 613
Target Start/End: Complemental strand, 23505959 - 23505898
Alignment:
Q  552 aacaacaacacaatcctttaacaaagtcactcacctttccaaattcatcatcttccttctat 613  Q
    |||||||| ||||| ||||| |||| ||| ||| ||| |||||||||||||||||| |||||    
T  23505959 aacaacaagacaattctttagcaaactcattcatcttcccaaattcatcatcttccctctat 23505898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 23506369 - 23506332
Alignment:
Q  206 ttggagattcccctttgtaatttagagattctttggtt 243  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  23506369 ttggagattcccccttgtaatttatagattctttggtt 23506332  T

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