View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20608_low_10 (Length: 437)

Name: NF20608_low_10
Description: NF20608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20608_low_10
NF20608_low_10
[»] chr1 (7 HSPs)
chr1 (20-86)||(33218391-33218457)
chr1 (14-74)||(10428064-10428124)
chr1 (14-69)||(45064073-45064128)
chr1 (36-87)||(10427348-10427400)
chr1 (20-85)||(4790225-4790291)
chr1 (36-87)||(10427493-10427545)
chr1 (20-87)||(31239056-31239124)
[»] chr5 (9 HSPs)
chr5 (18-76)||(18282286-18282344)
chr5 (20-87)||(29686232-29686300)
chr5 (20-87)||(14000852-14000920)
chr5 (36-87)||(14001128-14001180)
chr5 (37-84)||(41863326-41863374)
chr5 (36-74)||(5856427-5856465)
chr5 (35-87)||(35695268-35695321)
chr5 (20-87)||(4460485-4460553)
chr5 (20-83)||(24090657-24090721)
[»] chr4 (7 HSPs)
chr4 (20-87)||(4505794-4505862)
chr4 (24-87)||(35519404-35519468)
chr4 (53-91)||(3240103-3240142)
chr4 (40-87)||(54485759-54485806)
chr4 (20-69)||(7656720-7656769)
chr4 (20-87)||(10214332-10214400)
chr4 (20-87)||(27746686-27746754)
[»] chr2 (10 HSPs)
chr2 (36-87)||(11681647-11681699)
chr2 (36-87)||(11694221-11694273)
chr2 (33-87)||(6786730-6786785)
chr2 (33-83)||(8904967-8905018)
chr2 (57-87)||(9052236-9052266)
chr2 (20-85)||(27312904-27312973)
chr2 (46-87)||(28416973-28417015)
chr2 (38-87)||(38502258-38502308)
chr2 (19-87)||(35468717-35468786)
chr2 (36-87)||(11090105-11090157)
[»] chr8 (6 HSPs)
chr8 (22-87)||(1284151-1284217)
chr8 (18-74)||(3541172-3541228)
chr8 (33-87)||(34151119-34151174)
chr8 (19-87)||(11420427-11420496)
chr8 (20-87)||(10794654-10794722)
chr8 (20-87)||(16337997-16338065)
[»] chr7 (4 HSPs)
chr7 (35-87)||(1292089-1292142)
chr7 (25-87)||(24649971-24650034)
chr7 (20-74)||(42252569-42252623)
chr7 (40-87)||(7606262-7606310)
[»] chr3 (7 HSPs)
chr3 (20-87)||(34996067-34996134)
chr3 (32-87)||(36643593-36643649)
chr3 (20-83)||(47410517-47410581)
chr3 (36-89)||(47409608-47409662)
chr3 (36-88)||(39199171-39199224)
chr3 (36-87)||(2594488-2594540)
chr3 (36-87)||(50585749-50585801)
[»] chr6 (3 HSPs)
chr6 (20-74)||(17294016-17294070)
chr6 (14-87)||(32279622-32279696)
chr6 (14-74)||(14690998-14691058)


Alignment Details
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 33218391 - 33218457
Alignment:
Q  20 ttaaacaaattcaactataagaatgctatttggttggtgtcattcaaaaagataa-aatttatattat 86  Q
    ||||||||||| ||| |||||||||||||||  |||||||||||||||||||||| ||||||||||||    
T  33218391 ttaaacaaatttaac-ataagaatgctattttattggtgtcattcaaaaagataagaatttatattat 33218457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 10428124 - 10428064
Alignment:
Q  14 atatctttaaacaaattcaactataagaatgctatttggttggtgtcattcaaaaagataa 74  Q
    ||||| |||||||||||  |||||||||||  ||||| |||||||||||||||||||||||    
T  10428124 atatcgttaaacaaatttgactataagaatattattttgttggtgtcattcaaaaagataa 10428064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 45064128 - 45064073
Alignment:
Q  14 atatctttaaacaaattcaactataagaatgctatttggttggtgtcattcaaaaa 69  Q
    ||||||||||||||||| ||||||||||||  |||||  |||||||||||||||||    
T  45064128 atatctttaaacaaatttaactataagaatattattttattggtgtcattcaaaaa 45064073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 10427348 - 10427400
Alignment:
Q  36 ataagaatgctatttggttggtgtcattcaaaaagataa-aatttatattata 87  Q
    ||||||||||||||| |||||||||||| |||||||||| || ||||||||||    
T  10427348 ataagaatgctattttgttggtgtcatttaaaaagataagaacttatattata 10427400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 4790225 - 4790291
Alignment:
Q  20 ttaaacaaattcaactataagaatgctatttggttggtgtcattcaaaaagat-aaaatttatatta 85  Q
    ||||||||||| ||||||||||||||||||  |||||||| | | ||||| || |||||||||||||    
T  4790225 ttaaacaaattaaactataagaatgctattatgttggtgttaataaaaaatataaaaatttatatta 4790291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 10427493 - 10427545
Alignment:
Q  36 ataagaatgctatttggttggtgtcattcaaaaagataa-aatttatattata 87  Q
    ||||||||||||||| |||| ||||||| ||||| |||| |||||||||||||    
T  10427493 ataagaatgctattttgttgatgtcattaaaaaaaataagaatttatattata 10427545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 31239056 - 31239124
Alignment:
Q  20 ttaaacaaattcaactataagaatgctatttggttggtgtcattcaaaaagataa-aatttatattata 87  Q
    |||||||||||  ||  ||||||||||||||  ||||| ||||| |||||||||| |||||||||||||    
T  31239056 ttaaacaaatttcacagtaagaatgctattttattggtatcatttaaaaagataagaatttatattata 31239124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 18282344 - 18282286
Alignment:
Q  18 ctttaaacaaattcaactataagaatgctatttggttggtgtcattcaaaaagataaaa 76  Q
    |||||||||||||  |||||||||||  ||||| |||||||||||||||||||||||||    
T  18282344 ctttaaacaaatttgactataagaatattattttgttggtgtcattcaaaaagataaaa 18282286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 29686300 - 29686232
Alignment:
Q  20 ttaaacaaattcaactataagaatgctatttggttggtgtcattcaaaaagataa-aatttatattata 87  Q
    |||||||||||  |||||||||||| || ||  |||||||||||||||||||||| |||||||||||||    
T  29686300 ttaaacaaattttactataagaatgttaatttattggtgtcattcaaaaagataagaatttatattata 29686232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 14000920 - 14000852
Alignment:
Q  20 ttaaacaaattcaactataagaatgctatttggttggtgtcattcaaaaagat-aaaatttatattata 87  Q
    |||||||||||  ||||||  ||||| |||| |||||||||||| |||||||| |||||||||||||||    
T  14000920 ttaaacaaatttgactatagaaatgcaattttgttggtgtcattaaaaaagataaaaatttatattata 14000852  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 14001180 - 14001128
Alignment:
Q  36 ataagaatgctatttggttggtgtcattcaaaaagataa-aatttatattata 87  Q
    ||||||||| ||||| |||| |||||||||||||||||| |||||||||||||    
T  14001180 ataagaatgttattttgttgatgtcattcaaaaagataagaatttatattata 14001128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 84
Target Start/End: Complemental strand, 41863374 - 41863326
Alignment:
Q  37 taagaatgctatttggttggtgtcattcaaaaagataa-aatttatatt 84  Q
    |||||||||||||| |||||||||||| |||||||||| ||||||||||    
T  41863374 taagaatgctattttgttggtgtcattaaaaaagataagaatttatatt 41863326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 5856465 - 5856427
Alignment:
Q  36 ataagaatgctatttggttggtgtcattcaaaaagataa 74  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  5856465 ataagaatgctattttgttggtgtcatttaaaaagataa 5856427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 35695268 - 35695321
Alignment:
Q  35 tataagaatgctatttggttggtgtcattcaaaaagata-aaatttatattata 87  Q
    |||||||||||||| | | ||||| |||||||||||||| ||||||||||||||    
T  35695268 tataagaatgctatattgctggtgccattcaaaaagatataaatttatattata 35695321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 4460485 - 4460553
Alignment:
Q  20 ttaaacaaattcaactataagaatgctatttggttggtgtcattcaaaaagataa-aatttatattata 87  Q
    ||||||||| | | |||||| |||||||| | |||||| |||||||||||||||| || ||||||||||    
T  4460485 ttaaacaaaattacctataaaaatgctatattgttggtatcattcaaaaagataagaaattatattata 4460553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 24090721 - 24090657
Alignment:
Q  20 ttaaacaaattcaactataagaatgctatttggttggtgtcattcaaaaagataa-aatttatat 83  Q
    ||||| ||||| | ||||||||||| ||| |  |||||||||||||||||||||| |||||||||    
T  24090721 ttaaataaatttacctataagaatgatatattattggtgtcattcaaaaagataataatttatat 24090657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 4505794 - 4505862
Alignment:
Q  20 ttaaacaaattcaactataagaatgctatttggttggtgtcattcaaaaagataa-aatttatattata 87  Q
    ||||||| |||  ||||||| ||| |||||| ||||||||||||||||||||||| |||||||||||||    
T  4505794 ttaaacatatttgactataataatcctattttgttggtgtcattcaaaaagataagaatttatattata 4505862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 35519404 - 35519468
Alignment:
Q  24 acaaattcaactataagaatgctatttggttggtgtcattcaaaaagataa-aatttatattata 87  Q
    |||||||||||||||| |||| |||||  || ||||||||||||||||||| | |||||||||||    
T  35519404 acaaattcaactataaaaatgttattttattagtgtcattcaaaaagataagattttatattata 35519468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 91
Target Start/End: Complemental strand, 3240142 - 3240103
Alignment:
Q  53 ttggtgtcattcaaaaagat-aaaatttatattatactat 91  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  3240142 ttggtgtcattcaaaaagataaaaatttatattatactat 3240103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 54485759 - 54485806
Alignment:
Q  40 gaatgctatttggttggtgtcattcaaaaagataaaatttatattata 87  Q
    ||||||||||| ||||||||||||||||||||| | | ||||||||||    
T  54485759 gaatgctattttgttggtgtcattcaaaaagattagaattatattata 54485806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 7656769 - 7656720
Alignment:
Q  20 ttaaacaaattcaactataagaatgctatttggttggtgtcattcaaaaa 69  Q
    |||| ||||||  |||||||||||||||||| |||||||||||| |||||    
T  7656769 ttaagcaaattagactataagaatgctattttgttggtgtcattaaaaaa 7656720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 10214400 - 10214332
Alignment:
Q  20 ttaaacaaattcaactataagaatgctatttggttggtgtcattcaaaaagataa-aatttatattata 87  Q
    ||||| |||||  |||||||||||| ||||| |||||||||||||||| | |||| ||||| |||||||    
T  10214400 ttaaataaatttgactataagaatgttattttgttggtgtcattcaaatatataagaatttgtattata 10214332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 27746754 - 27746686
Alignment:
Q  20 ttaaacaaattcaactataagaatgctatttggttggtgtcattcaaaaagataa-aatttatattata 87  Q
    ||||||||||||| ||| || |||| ||| |  ||||||||||| |||||||||| |||||||||||||    
T  27746754 ttaaacaaattcacctacaataatgttatattattggtgtcattgaaaaagataagaatttatattata 27746686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 11681699 - 11681647
Alignment:
Q  36 ataagaatgctatttggttggtgtcattcaaaaagat-aaaatttatattata 87  Q
    |||||||||||||||| ||||||||||||||||| || |||||||||||||||    
T  11681699 ataagaatgctatttgattggtgtcattcaaaaatataaaaatttatattata 11681647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 11694273 - 11694221
Alignment:
Q  36 ataagaatgctatttggttggtgtcattcaaaaagat-aaaatttatattata 87  Q
    ||||||||||||||| |||||||||||||||||| || |||||||||||||||    
T  11694273 ataagaatgctattttgttggtgtcattcaaaaatataaaaatttatattata 11694221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 6786785 - 6786730
Alignment:
Q  33 actataagaatgctatttggttggtgtcattcaaaaaga-taaaatttatattata 87  Q
    |||||||||||||||||| |||||||||||| ||||||| ||||||||||| ||||    
T  6786785 actataagaatgctattttgttggtgtcatttaaaaagattaaaatttatactata 6786730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 8905018 - 8904967
Alignment:
Q  33 actataagaatgctatttggttggtgtcattcaaaaagataa-aatttatat 83  Q
    |||||||||||||||||| | ||||||||||||| ||||||| |||||||||    
T  8905018 actataagaatgctattttgctggtgtcattcaacaagataagaatttatat 8904967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 87
Target Start/End: Original strand, 9052236 - 9052266
Alignment:
Q  57 tgtcattcaaaaagataaaatttatattata 87  Q
    |||||||||||||||||||||||||||||||    
T  9052236 tgtcattcaaaaagataaaatttatattata 9052266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 27312904 - 27312973
Alignment:
Q  20 ttaaacaaattcaactataagaatgctat-ttg--gttggtgtcattcaaaaagat-aaaatttatatta 85  Q
    ||||||||||| | ||||||||||| ||| |||  ||||||||||||||||||||| |||||||||||||    
T  27312904 ttaaacaaatttatctataagaatgttatattgttgttggtgtcattcaaaaagataaaaatttatatta 27312973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 28416973 - 28417015
Alignment:
Q  46 tatttggttggtgtcattcaaaaagataa-aatttatattata 87  Q
    ||||| ||||||||||||||||||||||| |||||||||||||    
T  28416973 tattttgttggtgtcattcaaaaagataagaatttatattata 28417015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 38502258 - 38502308
Alignment:
Q  38 aagaatgctatttggttggtgtcattcaaaaagataa-aatttatattata 87  Q
    |||||||||||||  ||||| |||||||||||||||| |||||||||||||    
T  38502258 aagaatgctattttattggtatcattcaaaaagataagaatttatattata 38502308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 35468717 - 35468786
Alignment:
Q  19 tttaaacaaattcaactataagaatgctatttggttggtgtcattcaaaaagataa-aatttatattata 87  Q
    ||||| ||||||  |||||||||||| ||||| |||||||||| | ||||| |||| |||||||||||||    
T  35468717 tttaagcaaatttgactataagaatgttattttgttggtgtcaataaaaaatataagaatttatattata 35468786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 11090105 - 11090157
Alignment:
Q  36 ataagaatgctatttggttggtgtcattcaaaaagataa-aatttatattata 87  Q
    |||| |||||| ||| |||||| |||||||||||||||| |||||||||||||    
T  11090105 ataacaatgctgttttgttggtttcattcaaaaagataagaatttatattata 11090157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 1284151 - 1284217
Alignment:
Q  22 aaacaaattcaactataagaatgctatttggttggtgtcattcaaaaagata-aaatttatattata 87  Q
    |||||||||  |||||||||||| ||||| ||| |||||||||||||||||| |||||||| |||||    
T  1284151 aaacaaatttcactataagaatgttattttgttagtgtcattcaaaaagatacaaatttatgttata 1284217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 3541172 - 3541228
Alignment:
Q  18 ctttaaacaaattcaactataagaatgctatttggttggtgtcattcaaaaagataa 74  Q
    ||||| |||| ||| |||||||||||  ||||| |||||||||||||||||||||||    
T  3541172 ctttacacaagttcgactataagaatattattttgttggtgtcattcaaaaagataa 3541228  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 34151119 - 34151174
Alignment:
Q  33 actataagaatgctatttggttggtgtcattcaaaaagataa-aatttatattata 87  Q
    ||||||| ||| |||||| |||||||||||| |||||||||| |||||||||||||    
T  34151119 actataataatcctattttgttggtgtcatttaaaaagataagaatttatattata 34151174  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 11420496 - 11420427
Alignment:
Q  19 tttaaacaaattcaactataagaatgctatttggttggtgtcattcaaaaagataa-aatttatattata 87  Q
    |||||| |||||  |||||||||||  ||||| ||||||||  ||||||||||||| |||||||||||||    
T  11420496 tttaaataaatttgactataagaatattattttgttggtgttgttcaaaaagataagaatttatattata 11420427  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 10794722 - 10794654
Alignment:
Q  20 ttaaacaaattcaactataagaatgctatttggttggtgtcattcaaaaagataa-aatttatattata 87  Q
    |||||||||||  ||  |||||||||||||| ||| |||| |||||||||||||| ||||||| |||||    
T  10794722 ttaaacaaatttgaccttaagaatgctattttgttagtgttattcaaaaagataagaatttatgttata 10794654  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 16337997 - 16338065
Alignment:
Q  20 ttaaacaaattcaactataagaatgctatttggttggtgtcattcaaaaagataaa-atttatattata 87  Q
    |||||||||||   ||||||||||| ||| | |||||||||||| ||||||||||| | ||||||||||    
T  16337997 ttaaacaaatttgtctataagaatgatatattgttggtgtcatttaaaaagataaacaattatattata 16338065  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 1292142 - 1292089
Alignment:
Q  35 tataagaatgctatttggttggtgtcattcaaaaagataa-aatttatattata 87  Q
    |||||||||||||| | |||||||||||| |||||||||| |||||||||||||    
T  1292142 tataagaatgctatattgttggtgtcattaaaaaagataagaatttatattata 1292089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 24649971 - 24650034
Alignment:
Q  25 caaattcaactataagaatgctatttggttggtgtcattcaaaaagataa-aatttatattata 87  Q
    |||||| ||| ||||||||| ||||| || ||| |||||||||||||||| |||||||||||||    
T  24649971 caaatttaaccataagaatgttattttgtcggtctcattcaaaaagataagaatttatattata 24650034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 42252623 - 42252569
Alignment:
Q  20 ttaaacaaattcaactataagaatgctatttggttggtgtcattcaaaaagataa 74  Q
    ||||||||||| |||||||||||| |||||| ||||| |||||| ||||| ||||    
T  42252623 ttaaacaaatttaactataagaatactattttgttggcgtcattaaaaaatataa 42252569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 7606262 - 7606310
Alignment:
Q  40 gaatgctatttggttggtgtcattcaaaaagat-aaaatttatattata 87  Q
    ||||| ||||| |||| |||||||||||||||| |||||||||||||||    
T  7606262 gaatgttattttgttgatgtcattcaaaaagataaaaatttatattata 7606310  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 34996134 - 34996067
Alignment:
Q  20 ttaaacaaattcaactataagaatgctatttggttggtgtcattcaaaaagataa-aatttatattata 87  Q
    |||| |||||| ||| ||||||||||||||| |||||||||||| |||||||||| | |||||||||||    
T  34996134 ttaagcaaatttaaccataagaatgctattttgttggtgtcatt-aaaaagataagagtttatattata 34996067  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 36643649 - 36643593
Alignment:
Q  32 aactataagaatgctatttggttggtgtcattcaaaaagataa-aatttatattata 87  Q
    ||||||||||||| ||||| |||||| |||||||||| ||||| |||||||||||||    
T  36643649 aactataagaatgttattttgttggtatcattcaaaacgataagaatttatattata 36643593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 47410581 - 47410517
Alignment:
Q  20 ttaaacaaattcaactataagaatgctatttggttggtgtcattcaaaaagataa-aatttatat 83  Q
    |||||||||||  ||||||| |||| |||||  |||||||||||||||||||||| |||||||||    
T  47410581 ttaaacaaatttgactataaaaatgatattttattggtgtcattcaaaaagataagaatttatat 47410517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 47409608 - 47409662
Alignment:
Q  36 ataagaatgctatttggttggtgtcattcaaaaagataa-aatttatattatact 89  Q
    ||||||||| ||||| || |||||||| ||||||||||| |||||||||||||||    
T  47409608 ataagaatgttattttgtcggtgtcatccaaaaagataagaatttatattatact 47409662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 39199224 - 39199171
Alignment:
Q  36 ataagaatgctatttggttggtgtcattcaaaaagataa-aatttatattatac 88  Q
    ||||||||| ||||| |||| ||||||||||||| |||| ||||||||||||||    
T  39199224 ataagaatgatattttgttgttgtcattcaaaaaaataagaatttatattatac 39199171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 2594488 - 2594540
Alignment:
Q  36 ataagaatgctatttggttggtgtcattcaaaaagataa-aatttatattata 87  Q
    |||| |||| ||||| | ||||||||||||||||||||| |||||||||||||    
T  2594488 ataacaatgttattttgctggtgtcattcaaaaagataagaatttatattata 2594540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 50585749 - 50585801
Alignment:
Q  36 ataagaatgctatttggttggtgtcattcaaaaagat-aaaatttatattata 87  Q
    ||||||||  ||||| |||||||| |||||||||||| |||||||||||||||    
T  50585749 ataagaatattattttgttggtgttattcaaaaagataaaaatttatattata 50585801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 17294070 - 17294016
Alignment:
Q  20 ttaaacaaattcaactataagaatgctatttggttggtgtcattcaaaaagataa 74  Q
    ||||| |||||  |||||||||||||||||| |||||| |||||| |||||||||    
T  17294070 ttaaataaattagactataagaatgctattttgttggtatcattcgaaaagataa 17294016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 32279696 - 32279622
Alignment:
Q  14 atatctttaaacaaattcaactataagaatgctatttggttggtgtcattcaaaaagataa-aatttatattata 87  Q
    ||||| |||| ||||||  || |||| |||| ||||| |||||||||||| |||||||||| |||||||||||||    
T  32279696 atatccttaagcaaatttgaccataaaaatgttattttgttggtgtcattaaaaaagataagaatttatattata 32279622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 14691058 - 14690998
Alignment:
Q  14 atatctttaaacaaattcaactataagaatgctatttggttggtgtcattcaaaaagataa 74  Q
    ||||| ||| |||||||  || ||||||||||||||| |||||||| || |||||||||||    
T  14691058 atatccttacacaaatttgacaataagaatgctattttgttggtgttatccaaaaagataa 14690998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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