View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20608_low_12 (Length: 339)

Name: NF20608_low_12
Description: NF20608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20608_low_12
NF20608_low_12
[»] chr4 (13 HSPs)
chr4 (122-321)||(8929897-8930097)
chr4 (2-105)||(8929700-8929803)
chr4 (163-321)||(8905249-8905410)
chr4 (169-321)||(8916099-8916254)
chr4 (180-318)||(8976027-8976168)
chr4 (180-318)||(9001946-9002084)
chr4 (178-318)||(9027779-9027922)
chr4 (198-318)||(8971899-8972022)
chr4 (29-105)||(8900873-8900949)
chr4 (195-318)||(8952938-8953064)
chr4 (12-105)||(8914778-8914871)
chr4 (31-105)||(8979075-8979149)
chr4 (35-105)||(9030593-9030663)
[»] chr5 (4 HSPs)
chr5 (182-321)||(20075308-20075450)
chr5 (195-318)||(9400973-9401099)
chr5 (29-105)||(20074332-20074408)
chr5 (31-101)||(9400574-9400644)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 122 - 321
Target Start/End: Original strand, 8929897 - 8930097
Alignment:
Q  122 tgatatagtggatttaaattgagtaaaaaatatcaaattcgaaaaggaatcaagac-aacataccacgaggactcctttgatatgatcaaaagtgagatc 220  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8929897 tgatatagtggatttaaagtgagtaaaaaatatcaaattcgaaaaggaatcaagaccaacataccacgaggactcctttgatatgatcaaaagtgagatc 8929996  T
Q  221 aattgaaaacaaacgttgtttcttcaattggagtaagacatcaacaataaactctccatctgtattttgtctatttggatccaaatgttcatcaataacc 320  Q
    | |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8929997 agttgaaaacaaacgttgtttcatcaattcgagtaagacatcaacaataaactctccatctgtattttgtctatttggatccaaatgttcatcaataacc 8930096  T
Q  321 t 321  Q
    |    
T  8930097 t 8930097  T

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Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 8929803 - 8929700
Alignment:
Q  2 taactactagtattctttatgttcaggacatgcttgtagccgcaacagataccacgtctgccacgatagtgtgggcaatgactgccctaataaaaaaccc 101  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8929803 taactactcgtattctttatgtttaggacatgcttgtagccgcaacagataccacgtctgccacgatagtgtgggctatgactgccctaataaaaaaccc 8929704  T
Q  102 aaga 105  Q
    ||||    
T  8929703 aaga 8929700  T

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Target: chr4; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 163 - 321
Target Start/End: Original strand, 8905249 - 8905410
Alignment:
Q  163 aaaaggaatcaagacaacataccacgaggactcctttgatatgatcaaaagtgagatcaattgaaaacaaacgttgtttcttcaattggagtaagacatc 262  Q
    |||| ||||||||||||||||||| |||||||||||| || ||||||||||| |||||||||| ||||||||||| |||||||||||| || ||||||||    
T  8905249 aaaatgaatcaagacaacataccatgaggactcctttaatgtgatcaaaagtaagatcaattggaaacaaacgttctttcttcaattgtagcaagacatc 8905348  T
Q  263 aacaataaactct---ccatctgtattttgtctatttggatccaaatgttcatcaataacct 321  Q
    |||||| | ||||    |||||  || |||||||||||||||||||||||||||||||||||    
T  8905349 aacaatgacctcttcatcatcttcatgttgtctatttggatccaaatgttcatcaataacct 8905410  T

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Target: chr4; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 169 - 321
Target Start/End: Original strand, 8916099 - 8916254
Alignment:
Q  169 aatcaagacaacataccacgaggactcctttgatatgatcaaaagtgagatcaattgaaaacaaacgttgtttcttcaattggagtaagacatcaacaat 268  Q
    |||||||||||||||||| |||||||||||| || ||||||||||| |||||||||| ||||||||||| |||||||||||| || ||||||||||||||    
T  8916099 aatcaagacaacataccatgaggactcctttaatgtgatcaaaagtaagatcaattggaaacaaacgttctttcttcaattgtagcaagacatcaacaat 8916198  T
Q  269 aaactct---ccatctgtattttgtctatttggatccaaatgttcatcaataacct 321  Q
     | ||||    |||||  || |||||||||||||||||||||||||||||||||||    
T  8916199 gacctcttcatcatcttcatgttgtctatttggatccaaatgttcatcaataacct 8916254  T

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Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 180 - 318
Target Start/End: Complemental strand, 8976168 - 8976027
Alignment:
Q  180 cataccacgaggactcctttgatatgatcaaaagtgagatcaattgaaaacaaacgttgtttcttcaattggagtaagacatcaacaataaactctccat 279  Q
    ||||||| |||||| |||||||| ||||||||||||| |||||  |||||| | |||| |||||||||||||||||||| |||||||||||  ||| |||    
T  8976168 cataccatgaggacccctttgatgtgatcaaaagtgatatcaaaagaaaacgatcgttttttcttcaattggagtaagatatcaacaataacttcttcat 8976069  T
Q  280 ctgtattttg---tctatttggatccaaatgttcatcaataa 318  Q
    ||||| ||||   |||||||||||||||||||||||||||||    
T  8976068 ctgtaatttgttctctatttggatccaaatgttcatcaataa 8976027  T

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Target: chr4; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 180 - 318
Target Start/End: Original strand, 9001946 - 9002084
Alignment:
Q  180 cataccacgaggactcctttgatatgatcaaaagtgagatcaattgaaaacaaacgttgtttcttcaattggagtaagacatcaacaataaactctccat 279  Q
    |||||||  ||||| |||||||| ||||||||||||| |||||  |||||  |||| | |||||| | ||| || |||||||||||||||| |||| |||    
T  9001946 cataccataaggacccctttgatgtgatcaaaagtgatatcaaaagaaaatgaacgctttttcttaagttgaagcaagacatcaacaataacctcttcat 9002045  T
Q  280 ctgtattttgtctatttggatccaaatgttcatcaataa 318  Q
    |||||| || |||||||||||||||||||||||| ||||    
T  9002046 ctgtatgttttctatttggatccaaatgttcatctataa 9002084  T

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Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 178 - 318
Target Start/End: Complemental strand, 9027922 - 9027779
Alignment:
Q  178 aacataccacgaggactcctttgatatgatcaaaagtgagatcaattgaaaacaaacgttgtttcttcaattggagtaagacatcaacaataaactctcc 277  Q
    ||||||||||||| ||  ||||||| ||||  |||||||||||||||||| ||||| | |||||||| |  |||||||||||||||||||||   ||| |    
T  9027922 aacataccacgagaacagctttgatgtgattgaaagtgagatcaattgaagacaaatgatgtttcttgagatggagtaagacatcaacaatatcttcttc 9027823  T
Q  278 atctgtattttg---tctatttggatccaaatgttcatcaataa 318  Q
    ||||||| ||||   ||||||||||||||||||| |||||||||    
T  9027822 atctgtaatttgttctctatttggatccaaatgtacatcaataa 9027779  T

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Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 198 - 318
Target Start/End: Original strand, 8971899 - 8972022
Alignment:
Q  198 ttgatatgatcaaaagtgagatcaattgaaaacaaacgttgtttcttcaattggagtaagacatcaacaataaactctccatctgtattttg---tctat 294  Q
    ||||| ||||| |||||||||||||||||| | ||| | |||||||| | ||||||||| ||||||||||||   ||| ||||| || ||||   |||||    
T  8971899 ttgatgtgatcgaaagtgagatcaattgaagataaatgatgtttcttgagttggagtaaaacatcaacaatatcttcttcatctttaatttgttctctat 8971998  T
Q  295 ttggatccaaatgttcatcaataa 318  Q
    ||||||||||||| ||||||||||    
T  8971999 ttggatccaaatgctcatcaataa 8972022  T

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Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 8900949 - 8900873
Alignment:
Q  29 acatgcttgtagccgcaacagataccacgtctgccacgatagtgtgggcaatgactgccctaataaaaaacccaaga 105  Q
    ||||||||||||| ||||| |||||||| |||||||| ||||| ||||| ||||||||| |||||||||| ||||||    
T  8900949 acatgcttgtagctgcaacggataccacatctgccacaatagtttgggctatgactgccttaataaaaaatccaaga 8900873  T

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Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 318
Target Start/End: Complemental strand, 8953064 - 8952938
Alignment:
Q  195 cctttgatatgatcaaaagtgagatcaattgaaaacaaacgttgtttcttcaattggagtaagacatcaacaataaactctccatctg---tattttgtc 291  Q
    |||||||| ||||||||  ||| ||||| ||||||  |||||| |||||| | || ||| |||||||||||||||  |||| ||||||   ||| || ||    
T  8953064 cctttgatgtgatcaaagttgatatcaaatgaaaatgaacgttttttcttgagttcgagcaagacatcaacaatatcctcttcatctgtaatatgttctc 8952965  T
Q  292 tatttggatccaaatgttcatcaataa 318  Q
    |||||||||||||||||||||||||||    
T  8952964 tatttggatccaaatgttcatcaataa 8952938  T

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Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 8914871 - 8914778
Alignment:
Q  12 tattctttatgttcaggacatgcttgtagccgcaacagataccacgtctgccacgatagtgtgggcaatgactgccctaataaaaaacccaaga 105  Q
    |||||||||| | ||| | ||||||||||| ||||||| |||||||||||||||   ||| ||||| ||||||||| |||||||||| ||||||    
T  8914871 tattctttatatgcagaatatgcttgtagcggcaacaggtaccacgtctgccacagcagtttgggctatgactgccttaataaaaaatccaaga 8914778  T

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Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 8979075 - 8979149
Alignment:
Q  31 atgcttgtagccgcaacagataccacgtctgccacgatagtgtgggcaatgactgccctaataaaaaacccaaga 105  Q
    ||||||||||| ||||||||||| || || |||||   ||| ||||| |||||||||||||||||||||||||||    
T  8979075 atgcttgtagctgcaacagatactacatcagccacatcagtttgggctatgactgccctaataaaaaacccaaga 8979149  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 9030593 - 9030663
Alignment:
Q  35 ttgtagccgcaacagataccacgtctgccacgatagtgtgggcaatgactgccctaataaaaaacccaaga 105  Q
    |||||||||||||||||||||| || ||| |   ||| ||||| ||||| |||||||| ||||||||||||    
T  9030593 ttgtagccgcaacagataccacatcagccgcatcagtttgggctatgaccgccctaatgaaaaacccaaga 9030663  T

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Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 182 - 321
Target Start/End: Original strand, 20075308 - 20075450
Alignment:
Q  182 taccacgaggactcctttgatatgatcaaaagtgagatcaattgaaaacaaacgttgtttcttcaattggagtaagacatcaacaataaactct---cca 278  Q
    ||||| ||| |||||||| || ||||||||||| |||||||||| ||||||||||| |||||||||||| ||||||||||||||||| | ||||    ||    
T  20075308 taccatgagaactcctttaatgtgatcaaaagtaagatcaattggaaacaaacgttctttcttcaattgtagtaagacatcaacaatgacctcttcatca 20075407  T
Q  279 tctgtattttgtctatttggatccaaatgttcatcaataacct 321  Q
    |||  || |||||||||||||||||||||||||||||||||||    
T  20075408 tcttcatgttgtctatttggatccaaatgttcatcaataacct 20075450  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 318
Target Start/End: Original strand, 9400973 - 9401099
Alignment:
Q  195 cctttgatatgatcaaaagtgagatcaattgaaaacaaacgttgtttcttcaattggagtaagacatcaacaataaactctccatctgta---ttttgtc 291  Q
    ||||| || ||||||||||||| |||||  |||||  |||| | || ||||||||||||||||||||||||||||| || | ||  ||||   | ||||     
T  9400973 ccttttatgtgatcaaaagtgatatcaaaagaaaatgaacgcttttccttcaattggagtaagacatcaacaataaccttttcacttgtaaattgttgtt 9401072  T
Q  292 tatttggatccaaatgttcatcaataa 318  Q
     ||||||||||||||||||||||||||    
T  9401073 catttggatccaaatgttcatcaataa 9401099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 20074408 - 20074332
Alignment:
Q  29 acatgcttgtagccgcaacagataccacgtctgccacgatagtgtgggcaatgactgccctaataaaaaacccaaga 105  Q
    |||||||||| || |||||||||||||| || ||||| | ||| ||||| ||||||||  |||||||||| ||||||    
T  20074408 acatgcttgttgctgcaacagataccacatcagccacaacagtatgggctatgactgcattaataaaaaatccaaga 20074332  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 9400644 - 9400574
Alignment:
Q  31 atgcttgtagccgcaacagataccacgtctgccacgatagtgtgggcaatgactgccctaataaaaaaccc 101  Q
    ||||||||||| ||||||||||| || || || ||  |||| ||||||||||||| ||||||||| |||||    
T  9400644 atgcttgtagctgcaacagatacaacatcagctacattagtttgggcaatgactgtcctaataaagaaccc 9400574  T

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