View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20608_low_15 (Length: 302)

Name: NF20608_low_15
Description: NF20608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20608_low_15
NF20608_low_15
[»] chr4 (9 HSPs)
chr4 (85-284)||(8929897-8930097)
chr4 (126-284)||(8905249-8905410)
chr4 (132-284)||(8916099-8916254)
chr4 (143-281)||(8976027-8976168)
chr4 (143-281)||(9001946-9002084)
chr4 (141-281)||(9027779-9027922)
chr4 (2-76)||(8929781-8929854)
chr4 (161-281)||(8971899-8972022)
chr4 (158-281)||(8952938-8953064)
[»] chr5 (2 HSPs)
chr5 (145-284)||(20075308-20075450)
chr5 (158-281)||(9400973-9401099)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 85 - 284
Target Start/End: Original strand, 8929897 - 8930097
Alignment:
Q  85 tgatatagtggatttaaattgagtaaaaaatatcaaattcgaaaaggaatcaagac-aacataccacgaggactcctttgatatgatcaaaagtgagatc 183  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8929897 tgatatagtggatttaaagtgagtaaaaaatatcaaattcgaaaaggaatcaagaccaacataccacgaggactcctttgatatgatcaaaagtgagatc 8929996  T
Q  184 aattgaaaacaaacgttgtttcttcaattggagtaagacatcaacaataaactctccatctgtattttgtctatttggatccaaatgttcatcaataacc 283  Q
    | |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8929997 agttgaaaacaaacgttgtttcatcaattcgagtaagacatcaacaataaactctccatctgtattttgtctatttggatccaaatgttcatcaataacc 8930096  T
Q  284 t 284  Q
    |    
T  8930097 t 8930097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 126 - 284
Target Start/End: Original strand, 8905249 - 8905410
Alignment:
Q  126 aaaaggaatcaagacaacataccacgaggactcctttgatatgatcaaaagtgagatcaattgaaaacaaacgttgtttcttcaattggagtaagacatc 225  Q
    |||| ||||||||||||||||||| |||||||||||| || ||||||||||| |||||||||| ||||||||||| |||||||||||| || ||||||||    
T  8905249 aaaatgaatcaagacaacataccatgaggactcctttaatgtgatcaaaagtaagatcaattggaaacaaacgttctttcttcaattgtagcaagacatc 8905348  T
Q  226 aacaataaactct---ccatctgtattttgtctatttggatccaaatgttcatcaataacct 284  Q
    |||||| | ||||    |||||  || |||||||||||||||||||||||||||||||||||    
T  8905349 aacaatgacctcttcatcatcttcatgttgtctatttggatccaaatgttcatcaataacct 8905410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 132 - 284
Target Start/End: Original strand, 8916099 - 8916254
Alignment:
Q  132 aatcaagacaacataccacgaggactcctttgatatgatcaaaagtgagatcaattgaaaacaaacgttgtttcttcaattggagtaagacatcaacaat 231  Q
    |||||||||||||||||| |||||||||||| || ||||||||||| |||||||||| ||||||||||| |||||||||||| || ||||||||||||||    
T  8916099 aatcaagacaacataccatgaggactcctttaatgtgatcaaaagtaagatcaattggaaacaaacgttctttcttcaattgtagcaagacatcaacaat 8916198  T
Q  232 aaactct---ccatctgtattttgtctatttggatccaaatgttcatcaataacct 284  Q
     | ||||    |||||  || |||||||||||||||||||||||||||||||||||    
T  8916199 gacctcttcatcatcttcatgttgtctatttggatccaaatgttcatcaataacct 8916254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 143 - 281
Target Start/End: Complemental strand, 8976168 - 8976027
Alignment:
Q  143 cataccacgaggactcctttgatatgatcaaaagtgagatcaattgaaaacaaacgttgtttcttcaattggagtaagacatcaacaataaactctccat 242  Q
    ||||||| |||||| |||||||| ||||||||||||| |||||  |||||| | |||| |||||||||||||||||||| |||||||||||  ||| |||    
T  8976168 cataccatgaggacccctttgatgtgatcaaaagtgatatcaaaagaaaacgatcgttttttcttcaattggagtaagatatcaacaataacttcttcat 8976069  T
Q  243 ctgtattttg---tctatttggatccaaatgttcatcaataa 281  Q
    ||||| ||||   |||||||||||||||||||||||||||||    
T  8976068 ctgtaatttgttctctatttggatccaaatgttcatcaataa 8976027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 143 - 281
Target Start/End: Original strand, 9001946 - 9002084
Alignment:
Q  143 cataccacgaggactcctttgatatgatcaaaagtgagatcaattgaaaacaaacgttgtttcttcaattggagtaagacatcaacaataaactctccat 242  Q
    |||||||  ||||| |||||||| ||||||||||||| |||||  |||||  |||| | |||||| | ||| || |||||||||||||||| |||| |||    
T  9001946 cataccataaggacccctttgatgtgatcaaaagtgatatcaaaagaaaatgaacgctttttcttaagttgaagcaagacatcaacaataacctcttcat 9002045  T
Q  243 ctgtattttgtctatttggatccaaatgttcatcaataa 281  Q
    |||||| || |||||||||||||||||||||||| ||||    
T  9002046 ctgtatgttttctatttggatccaaatgttcatctataa 9002084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 141 - 281
Target Start/End: Complemental strand, 9027922 - 9027779
Alignment:
Q  141 aacataccacgaggactcctttgatatgatcaaaagtgagatcaattgaaaacaaacgttgtttcttcaattggagtaagacatcaacaataaactctcc 240  Q
    ||||||||||||| ||  ||||||| ||||  |||||||||||||||||| ||||| | |||||||| |  |||||||||||||||||||||   ||| |    
T  9027922 aacataccacgagaacagctttgatgtgattgaaagtgagatcaattgaagacaaatgatgtttcttgagatggagtaagacatcaacaatatcttcttc 9027823  T
Q  241 atctgtattttg---tctatttggatccaaatgttcatcaataa 281  Q
    ||||||| ||||   ||||||||||||||||||| |||||||||    
T  9027822 atctgtaatttgttctctatttggatccaaatgtacatcaataa 9027779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 8929781 - 8929854
Alignment:
Q  2 aacataaagaatactagtagttatgtactcgttaagggattttgtaaaatactcactattaacaagataaaagtt 76  Q
    |||||||||||||| |||||||| |||||| |||| | ||||||||||||||| |||||||||||||||||||||    
T  8929781 aacataaagaatacgagtagttaagtactctttaaag-attttgtaaaatacttactattaacaagataaaagtt 8929854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 161 - 281
Target Start/End: Original strand, 8971899 - 8972022
Alignment:
Q  161 ttgatatgatcaaaagtgagatcaattgaaaacaaacgttgtttcttcaattggagtaagacatcaacaataaactctccatctgtattttg---tctat 257  Q
    ||||| ||||| |||||||||||||||||| | ||| | |||||||| | ||||||||| ||||||||||||   ||| ||||| || ||||   |||||    
T  8971899 ttgatgtgatcgaaagtgagatcaattgaagataaatgatgtttcttgagttggagtaaaacatcaacaatatcttcttcatctttaatttgttctctat 8971998  T
Q  258 ttggatccaaatgttcatcaataa 281  Q
    ||||||||||||| ||||||||||    
T  8971999 ttggatccaaatgctcatcaataa 8972022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 281
Target Start/End: Complemental strand, 8953064 - 8952938
Alignment:
Q  158 cctttgatatgatcaaaagtgagatcaattgaaaacaaacgttgtttcttcaattggagtaagacatcaacaataaactctccatctg---tattttgtc 254  Q
    |||||||| ||||||||  ||| ||||| ||||||  |||||| |||||| | || ||| |||||||||||||||  |||| ||||||   ||| || ||    
T  8953064 cctttgatgtgatcaaagttgatatcaaatgaaaatgaacgttttttcttgagttcgagcaagacatcaacaatatcctcttcatctgtaatatgttctc 8952965  T
Q  255 tatttggatccaaatgttcatcaataa 281  Q
    |||||||||||||||||||||||||||    
T  8952964 tatttggatccaaatgttcatcaataa 8952938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 145 - 284
Target Start/End: Original strand, 20075308 - 20075450
Alignment:
Q  145 taccacgaggactcctttgatatgatcaaaagtgagatcaattgaaaacaaacgttgtttcttcaattggagtaagacatcaacaataaactct---cca 241  Q
    ||||| ||| |||||||| || ||||||||||| |||||||||| ||||||||||| |||||||||||| ||||||||||||||||| | ||||    ||    
T  20075308 taccatgagaactcctttaatgtgatcaaaagtaagatcaattggaaacaaacgttctttcttcaattgtagtaagacatcaacaatgacctcttcatca 20075407  T
Q  242 tctgtattttgtctatttggatccaaatgttcatcaataacct 284  Q
    |||  || |||||||||||||||||||||||||||||||||||    
T  20075408 tcttcatgttgtctatttggatccaaatgttcatcaataacct 20075450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 281
Target Start/End: Original strand, 9400973 - 9401099
Alignment:
Q  158 cctttgatatgatcaaaagtgagatcaattgaaaacaaacgttgtttcttcaattggagtaagacatcaacaataaactctccatctgta---ttttgtc 254  Q
    ||||| || ||||||||||||| |||||  |||||  |||| | || ||||||||||||||||||||||||||||| || | ||  ||||   | ||||     
T  9400973 ccttttatgtgatcaaaagtgatatcaaaagaaaatgaacgcttttccttcaattggagtaagacatcaacaataaccttttcacttgtaaattgttgtt 9401072  T
Q  255 tatttggatccaaatgttcatcaataa 281  Q
     ||||||||||||||||||||||||||    
T  9401073 catttggatccaaatgttcatcaataa 9401099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University