View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20608_low_19 (Length: 256)

Name: NF20608_low_19
Description: NF20608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20608_low_19
NF20608_low_19
[»] chr8 (3 HSPs)
chr8 (8-256)||(8018288-8018536)
chr8 (54-166)||(17654769-17654881)
chr8 (85-167)||(28697462-28697544)
[»] chr5 (3 HSPs)
chr5 (54-166)||(11106858-11106970)
chr5 (84-166)||(30987193-30987275)
chr5 (85-125)||(24874219-24874259)
[»] chr7 (2 HSPs)
chr7 (54-166)||(30269698-30269810)
chr7 (85-166)||(9082952-9083033)
[»] chr3 (1 HSPs)
chr3 (54-166)||(41430451-41430563)
[»] chr6 (1 HSPs)
chr6 (54-166)||(12734585-12734697)
[»] chr1 (2 HSPs)
chr1 (84-152)||(44269762-44269830)
chr1 (85-166)||(28521554-28521635)
[»] chr2 (1 HSPs)
chr2 (85-140)||(43706541-43706596)
[»] chr4 (1 HSPs)
chr4 (85-157)||(50822823-50822895)


Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 8 - 256
Target Start/End: Original strand, 8018288 - 8018536
Alignment:
Q  8 cgaagaaaattcaaaagatctgtcggaggagactcatnnnnnnnnnctcaaagtttgatgatgcactaagcttggacaaaaaatccgcacattgattccc 107  Q
    |||||||||||||||||||||||||||||||||||||         |||||| ||||||||| ||| || ||| ||||||||||||||||||| ||| ||    
T  8018288 cgaagaaaattcaaaagatctgtcggaggagactcataaaaagaaactcaaaatttgatgatacaccaaacttagacaaaaaatccgcacattaatttcc 8018387  T
Q  108 ttcctaaagggtgtgattcatcgtaacatttccttactccaatagctcttttatatcttatcagttagaatacatttagaagagcaacggaaacaatgat 207  Q
    |||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||| || |||||||||    
T  8018388 ttcccaaagagtgtgattcattgtaacatttccttactccaatagctcttttatatcttgtcagttggaatacattcagaagagcaatgggaacaatgat 8018487  T
Q  208 atagactatggaccnnnnnnntattatgattcttattgtccgcgaatat 256  Q
    || |||||||||||       ||||||||||||||||||||| ||||||    
T  8018488 attgactatggaccaaaaaaatattatgattcttattgtccgtgaatat 8018536  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 166
Target Start/End: Original strand, 17654769 - 17654881
Alignment:
Q  54 ctcaaagtttgatgatgcactaagcttggacaaaaaatccgcacattgattcccttcctaaagggtgtgattcatcgtaacatttccttactccaatagc 153  Q
    ||||||||||||||| |||| |||||||  |||||||| ||||| |||||||| ||||    |||| |||||||| |||| |||||||| |||||| |||    
T  17654769 ctcaaagtttgatgaggcaccaagcttgaccaaaaaattcgcacgttgattcctttcccttggggtatgattcatggtaatatttccttgctccaaaagc 17654868  T
Q  154 tcttttatatctt 166  Q
    |||||||||||||    
T  17654869 tcttttatatctt 17654881  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 167
Target Start/End: Complemental strand, 28697544 - 28697462
Alignment:
Q  85 aaaaaatccgcacattgattcccttcctaaagggtgtgattcatcgtaacatttccttactccaatagctcttttatatctta 167  Q
    |||||||| |||||||| ||| ||||   |||||||||||  |  ||||||||||||| |||||||| |||||||||||||||    
T  28697544 aaaaaatctgcacattgtttctcttctcgaagggtgtgataaagtgtaacatttccttgctccaataactcttttatatctta 28697462  T

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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 166
Target Start/End: Complemental strand, 11106970 - 11106858
Alignment:
Q  54 ctcaaagtttgatgatgcactaagcttggacaaaaaatccgcacattgattcccttcctaaagggtgtgattcatcgtaacatttccttactccaatagc 153  Q
    |||| |||||||||| |||| |||||||| |||||| |||||||||||||| |||| |   |||||||||||||||||||||||||||| |||||||| |    
T  11106970 ctcagagtttgatgaggcaccaagcttggccaaaaagtccgcacattgatttcctttccggagggtgtgattcatcgtaacatttccttgctccaataac 11106871  T
Q  154 tcttttatatctt 166  Q
    |||||||||||||    
T  11106870 tcttttatatctt 11106858  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 166
Target Start/End: Complemental strand, 30987275 - 30987193
Alignment:
Q  84 caaaaaatccgcacattgattcccttcctaaagggtgtgattcatcgtaacatttccttactccaatagctcttttatatctt 166  Q
    ||||||||| |||||||||||  |||    |||||||||||||||| || ||||| ||| |||||||||||||||||||||||    
T  30987275 caaaaaatctgcacattgattttcttttggaagggtgtgattcatcatagcattttcttgctccaatagctcttttatatctt 30987193  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 24874259 - 24874219
Alignment:
Q  85 aaaaaatccgcacattgattcccttcctaaagggtgtgatt 125  Q
    |||||||||||||||||||||||||||  ||||||||||||    
T  24874259 aaaaaatccgcacattgattcccttccctaagggtgtgatt 24874219  T

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Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 54 - 166
Target Start/End: Original strand, 30269698 - 30269810
Alignment:
Q  54 ctcaaagtttgatgatgcactaagcttggacaaaaaatccgcacattgattcccttcctaaagggtgtgattcatcgtaacatttccttactccaatagc 153  Q
    |||||||||||||||  ||| |||||||| |||||| || ||| |||||||| |||||  ||||||||||||||||||||||||||||| |||  |||||    
T  30269698 ctcaaagtttgatgagacaccaagcttggtcaaaaagtcggcatattgattctcttcccgaagggtgtgattcatcgtaacatttccttgctcatatagc 30269797  T
Q  154 tcttttatatctt 166  Q
    |||| ||||||||    
T  30269798 tcttatatatctt 30269810  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 166
Target Start/End: Original strand, 9082952 - 9083033
Alignment:
Q  85 aaaaaatccgcacattgattcccttcctaaagggtgtgattcatcgtaacatttccttactccaatagctcttttatatctt 166  Q
    |||||||| |||||||||||| |||||  |||||||||||| | | |||||||||| | |||||||| | ||||||||||||    
T  9082952 aaaaaatctgcacattgattctcttccctaagggtgtgattaaccataacatttccctgctccaataacacttttatatctt 9083033  T

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Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 54 - 166
Target Start/End: Original strand, 41430451 - 41430563
Alignment:
Q  54 ctcaaagtttgatgatgcactaagcttggacaaaaaatccgcacattgattcccttcctaaagggtgtgattcatcgtaacatttccttactccaatagc 153  Q
    ||||||||||||||| |||  ||  |||| |||||||||||||||||||||||||||    ||| |||||||||||||||||||| ||| |||||||| |    
T  41430451 ctcaaagtttgatgaggcagcaaatttggccaaaaaatccgcacattgattcccttctcggaggatgtgattcatcgtaacattttcttcctccaataac 41430550  T
Q  154 tcttttatatctt 166  Q
    |||||||||||||    
T  41430551 tcttttatatctt 41430563  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 166
Target Start/End: Complemental strand, 12734697 - 12734585
Alignment:
Q  54 ctcaaagtttgatgatgcactaagcttggacaaaaaatccgcacattgattcccttcctaaagggtgtgattcatcgtaacatttccttactccaatagc 153  Q
    ||||||||||||||| |||| ||| |||| || ||| || ||||||||||||||||||   || |||||||||||||||||||||||||  | |||||      
T  12734697 ctcaaagtttgatgaggcaccaagtttggccataaagtctgcacattgattcccttcccggagtgtgtgattcatcgtaacatttccttgtttcaataat 12734598  T
Q  154 tcttttatatctt 166  Q
    |||||||||||||    
T  12734597 tcttttatatctt 12734585  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 44269762 - 44269830
Alignment:
Q  84 caaaaaatccgcacattgattcccttcctaaagggtgtgattcatcgtaacatttccttactccaatag 152  Q
    |||||||||||||||||||||||||||    ||||||||||| ||||||||||||| ||||||||||||    
T  44269762 caaaaaatccgcacattgattcccttctcggagggtgtgattgatcgtaacatttctttactccaatag 44269830  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 166
Target Start/End: Complemental strand, 28521635 - 28521554
Alignment:
Q  85 aaaaaatccgcacattgattcccttcctaaagggtgtgattcatcgtaacatttccttactccaatagctcttttatatctt 166  Q
    ||||||| |||||||||||| |||| || |||| || |||| | | |||||||||| |||||||||| ||||||||||||||    
T  28521635 aaaaaattcgcacattgatttcctttctcaaggatgagattaaccataacatttccctactccaataactcttttatatctt 28521554  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 140
Target Start/End: Original strand, 43706541 - 43706596
Alignment:
Q  85 aaaaaatccgcacattgattcccttcctaaagggtgtgattcatcgtaacatttcc 140  Q
    ||||||||||||||||||||||| |||  |||||||||||| | | ||||||||||    
T  43706541 aaaaaatccgcacattgattcccatccctaagggtgtgattgaccataacatttcc 43706596  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 157
Target Start/End: Original strand, 50822823 - 50822895
Alignment:
Q  85 aaaaaatccgcacattgattcccttcctaaagggtgtgattcatcgtaacatttccttactccaatagctctt 157  Q
    |||||||| ||||||||||||| ||||  |||||||||||| | | ||||| |||| |||| ||||| |||||    
T  50822823 aaaaaatctgcacattgattcctttccctaagggtgtgattaaccataacaattccctacttcaataactctt 50822895  T

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