View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20608_low_2 (Length: 715)

Name: NF20608_low_2
Description: NF20608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20608_low_2
NF20608_low_2
[»] chr3 (7 HSPs)
chr3 (20-707)||(14337974-14338668)
chr3 (496-568)||(20503479-20503553)
chr3 (503-556)||(26492183-26492236)
chr3 (496-554)||(40993306-40993364)
chr3 (503-547)||(55401112-55401156)
chr3 (504-554)||(10954982-10955032)
chr3 (526-576)||(49179716-49179768)
[»] chr7 (12 HSPs)
chr7 (503-576)||(5937399-5937474)
chr7 (496-568)||(21880166-21880240)
chr7 (494-554)||(7197266-7197326)
chr7 (504-554)||(25956475-25956525)
chr7 (510-554)||(33994242-33994286)
chr7 (496-554)||(598238-598296)
chr7 (532-577)||(10702551-10702597)
chr7 (526-576)||(1885579-1885631)
chr7 (503-554)||(8234176-8234227)
chr7 (496-547)||(21864845-21864896)
chr7 (496-554)||(7973094-7973152)
chr7 (525-554)||(7438736-7438765)
[»] chr4 (16 HSPs)
chr4 (503-576)||(13307883-13307958)
chr4 (496-576)||(44362672-44362754)
chr4 (496-554)||(29205474-29205532)
chr4 (497-554)||(12797310-12797367)
chr4 (503-568)||(21945517-21945584)
chr4 (520-575)||(13117436-13117493)
chr4 (504-554)||(16073424-16073474)
chr4 (496-554)||(23292957-23293015)
chr4 (503-544)||(4157189-4157230)
chr4 (503-544)||(4157476-4157517)
chr4 (503-547)||(34306782-34306826)
chr4 (258-328)||(21570830-21570900)
chr4 (504-554)||(28964227-28964277)
chr4 (496-554)||(49431056-49431114)
chr4 (510-547)||(35157970-35158007)
chr4 (527-569)||(37496717-37496761)
[»] chr2 (14 HSPs)
chr2 (496-547)||(18840984-18841035)
chr2 (504-576)||(43585984-43586058)
chr2 (496-554)||(2438690-2438748)
chr2 (497-554)||(30404822-30404879)
chr2 (496-556)||(15972901-15972961)
chr2 (505-574)||(24067758-24067829)
chr2 (520-577)||(37491850-37491909)
chr2 (516-554)||(5040764-5040802)
chr2 (493-547)||(28596506-28596560)
chr2 (526-576)||(33884057-33884109)
chr2 (496-552)||(21091755-21091811)
chr2 (503-554)||(37559007-37559058)
chr2 (504-550)||(12224257-12224303)
chr2 (532-575)||(37211892-37211937)
[»] chr8 (13 HSPs)
chr8 (496-554)||(31557026-31557084)
chr8 (505-570)||(42874534-42874601)
chr8 (254-313)||(29705884-29705943)
chr8 (496-556)||(44462166-44462226)
chr8 (496-556)||(44469699-44469759)
chr8 (496-547)||(5813629-5813680)
chr8 (496-547)||(33405355-33405406)
chr8 (504-554)||(18407749-18407799)
chr8 (525-576)||(27733853-27733906)
chr8 (496-554)||(36450725-36450783)
chr8 (526-576)||(24295138-24295190)
chr8 (543-576)||(25104613-25104646)
chr8 (510-568)||(40332205-40332265)
[»] chr1 (10 HSPs)
chr1 (496-554)||(1815287-1815345)
chr1 (496-554)||(40258904-40258962)
chr1 (511-554)||(38078647-38078690)
chr1 (496-554)||(18190079-18190137)
chr1 (503-547)||(22515865-22515909)
chr1 (503-547)||(46348361-46348405)
chr1 (515-554)||(51410055-51410094)
chr1 (504-554)||(18337359-18337409)
chr1 (504-545)||(21530728-21530769)
chr1 (505-554)||(37598861-37598910)
[»] chr6 (19 HSPs)
chr6 (496-547)||(32978870-32978921)
chr6 (521-576)||(6751878-6751935)
chr6 (496-554)||(34595164-34595222)
chr6 (526-576)||(19369823-19369875)
chr6 (497-554)||(28152128-28152185)
chr6 (496-568)||(28715309-28715383)
chr6 (496-576)||(32225361-32225443)
chr6 (510-564)||(30851620-30851674)
chr6 (504-545)||(4877982-4878023)
chr6 (503-578)||(26402658-26402737)
chr6 (496-552)||(16833340-16833396)
chr6 (503-542)||(24645523-24645562)
chr6 (533-576)||(10031576-10031621)
chr6 (526-556)||(15489733-15489763)
chr6 (526-581)||(22745958-22746015)
chr6 (372-434)||(28077215-28077277)
chr6 (516-574)||(7377987-7378047)
chr6 (505-554)||(7977810-7977859)
chr6 (505-554)||(27904016-27904065)
[»] scaffold0083 (1 HSPs)
scaffold0083 (503-554)||(45508-45559)
[»] chr5 (14 HSPs)
chr5 (496-547)||(42893397-42893448)
chr5 (531-576)||(15302531-15302576)
chr5 (527-577)||(30080503-30080555)
chr5 (520-556)||(19167571-19167607)
chr5 (515-554)||(15884018-15884057)
chr5 (496-568)||(27932249-27932323)
chr5 (496-568)||(28588645-28588719)
chr5 (504-568)||(30502367-30502433)
chr5 (504-568)||(30542710-30542776)
chr5 (496-554)||(21191027-21191085)
chr5 (504-554)||(21576724-21576774)
chr5 (384-434)||(22976404-22976454)
chr5 (384-430)||(33695359-33695405)
chr5 (497-554)||(23012380-23012437)
[»] scaffold0652 (1 HSPs)
scaffold0652 (496-554)||(433-491)
[»] scaffold0314 (1 HSPs)
scaffold0314 (525-576)||(8954-9007)
[»] scaffold0050 (1 HSPs)
scaffold0050 (497-554)||(70308-70365)
[»] scaffold0053 (1 HSPs)
scaffold0053 (503-547)||(8835-8879)
[»] scaffold0512 (1 HSPs)
scaffold0512 (505-547)||(5016-5058)
[»] scaffold0697 (1 HSPs)
scaffold0697 (504-545)||(1683-1724)


Alignment Details
Target: chr3 (Bit Score: 559; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 20 - 707
Target Start/End: Original strand, 14337974 - 14338668
Alignment:
Q  20 agatattgtctccttttagcactgctgcaagttggatcaactcctgctgaaattcacttagctttgcatcttcatttgcctctccctttcttaactttat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14337974 agatattgtctccttttagcactgctgcaagttggatcaactcctgctgaaattcacttagctttgcatcttcatttgcctctccctttcttaactttat 14338073  T
Q  120 cggggttggaagctgttctgcaccaaagtaccgatatcaagaatcagcgaagagcgaaacatgttcgaaagatattgttagaaagatttaattcatacat 219  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14338074 cggggtcggaagctgttctgcaccaaagtaccgatatcaagaatcagcgaagagcaaaacatgttcgaaagatattgttagaaagatttaattcatacat 14338173  T
Q  220 acggcaaatgtgaagagtttgtatactgtcaattaattataaccgtcaaattattataaacgtttgaattctatcattaccacttctgaagtcagacaca 319  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14338174 acggcaaatgtaaagagtttgtatactgtcaattaattataaccgtcaaattattataaacgtttgaattctatcattaccacttctgaagtcagacaca 14338273  T
Q  320 tgattggttatgctatataatttacttatttaatgctttgagaattgattttggctctgttagataaatatagtggatagttgataagctaccttatagt 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||| ||||| |||||||||||||| ||||     
T  14338274 tgattggttatgctatataatttacttatttaatgctttgagaattgattttggttctgtttggtaaatatagcggataattgataagctacctgatagc 14338373  T
Q  420 ttatagcggatagctaataagctagctgatggccttaccaaacagagcccttaa----ttgttgaagcaaaacttttggagtgtccgggtgtccgacatg 515  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    ||||||||| |||||||||||||||||| ||||||||| | |    
T  14338374 ttatagcggatagctgataagctagctgatggccttaccaaacagagcccttaactgtttgttgaaggaaaacttttggagtgtcccggtgtccgatacg 14338473  T
Q  516 tgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatcatgtctgtgtc-gttatcggtgtccgtgtgtgtgttc 612  Q
    |||||||||||||||||||| |||| ||||||||||||  ||||||||| ||||||||||||| |||||||||| ||   |||||||||||| |||||||    
T  14338474 tgtcgtgtctgacaccgacatttgtgattacattgaattatgtcattttttcaaaattttatcgtgtctgtgtctgtgtccggtgtccgtgtatgtgttc 14338573  T
Q  613 gtgcttcaaagaaatgagcaactaacctgggcaatcagttctgggttctgtccttgtttgtacaataccttcaaaggttccagcccattcatctc 707  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14338574 gtgcttcaaagaagtgagcaactaacctgggcaatcagttctgggttctgtccttatttgtacaataccttcaaaggttccagcccattcatctc 14338668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 496 - 568
Target Start/End: Complemental strand, 20503553 - 20503479
Alignment:
Q  496 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaa 568  Q
    |||||| |||||| |||||||||||||||  ||||||||||||||||||||| |||||  ||||||||| |||||    
T  20503553 gtgtcccggtgtcagacatgtgtcgtgtccaacaccgacacttgtaattacactgaattatgtcattttttcaaa 20503479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 503 - 556
Target Start/End: Original strand, 26492183 - 26492236
Alignment:
Q  503 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaattgt 556  Q
    |||||| ||||||||||||||| |||||||| ||||||||||||| ||||||||    
T  26492183 ggtgtcagacatgtgtcgtgtccgacaccgatacttgtaattacactgaattgt 26492236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 496 - 554
Target Start/End: Original strand, 40993306 - 40993364
Alignment:
Q  496 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    |||||| |||||| ||||||||||||||| ||||||||||| | |||||||| ||||||    
T  40993306 gtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaatt 40993364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 503 - 547
Target Start/End: Complemental strand, 55401156 - 55401112
Alignment:
Q  503 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 547  Q
    |||||| |||| |||||||||| ||||||||||||||||||||||    
T  55401156 ggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattaca 55401112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 504 - 554
Target Start/End: Complemental strand, 10955032 - 10954982
Alignment:
Q  504 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    ||||| |||| |||||||||| ||||||||||||||| |||||| ||||||    
T  10955032 gtgtcggacacgtgtcgtgtccgacaccgacacttgtgattacactgaatt 10954982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 576
Target Start/End: Original strand, 49179716 - 49179768
Alignment:
Q  526 gacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 576  Q
    ||||||||||||||| ||||||| ||||  ||||| |||||||||||||||||    
T  49179716 gacaccgacacttgtgattacatcgaattatgtcactttctcaaaattttatc 49179768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 503 - 576
Target Start/End: Original strand, 5937399 - 5937474
Alignment:
Q  503 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 576  Q
    |||||||||||||| ||||| | ||||| ||||||||| ||||||||||||  |||||||||||||||||||||||    
T  5937399 ggtgtccgacatgtatcgtgaccgacacagacacttgtgattacattgaattatgtcattttctcaaaattttatc 5937474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 496 - 568
Target Start/End: Complemental strand, 21880240 - 21880166
Alignment:
Q  496 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaa 568  Q
    |||||| |||||| ||||||||||||||| |||||||||||||||||||||| |||||  ||| |||||||||||    
T  21880240 gtgtcctggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtaattttctcaaa 21880166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 494 - 554
Target Start/End: Original strand, 7197266 - 7197326
Alignment:
Q  494 gagtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    |||| ||| |||||| ||||||||| ||||| |||||||||||||||||||||||||||||    
T  7197266 gagtatcccggtgtcggacatgtgttgtgtccgacaccgacacttgtaattacattgaatt 7197326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 504 - 554
Target Start/End: Complemental strand, 25956525 - 25956475
Alignment:
Q  504 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    ||||||||||||| ||||||| ||||||||||||||| |||||||||||||    
T  25956525 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaatt 25956475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 510 - 554
Target Start/End: Complemental strand, 33994286 - 33994242
Alignment:
Q  510 gacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  33994286 gacatgtgtcgtgtctgacaccgacacttgtaattgcactgaatt 33994242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 496 - 554
Target Start/End: Complemental strand, 598296 - 598238
Alignment:
Q  496 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    |||||| |||||| |||| ||||||||||||||||||||||||  ||||||||| ||||    
T  598296 gtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacttacaattacatttaatt 598238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 532 - 577
Target Start/End: Original strand, 10702551 - 10702597
Alignment:
Q  532 gacacttgtaattacattgaat-tgtcattttctcaaaattttatca 577  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||    
T  10702551 gacacttataattacattgaatatgtcattttctcaaaattttatca 10702597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 526 - 576
Target Start/End: Complemental strand, 1885631 - 1885579
Alignment:
Q  526 gacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 576  Q
    ||||||||||||||| ||||||||||||  ||||||||| |||||||||||||    
T  1885631 gacaccgacacttgtgattacattgaattatgtcattttttcaaaattttatc 1885579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 503 - 554
Target Start/End: Complemental strand, 8234227 - 8234176
Alignment:
Q  503 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    |||||| ||||||||||||||| ||||||| ||||||||| |||| ||||||    
T  8234227 ggtgtcggacatgtgtcgtgtccgacaccggcacttgtaactacactgaatt 8234176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 496 - 547
Target Start/End: Complemental strand, 21864896 - 21864845
Alignment:
Q  496 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 547  Q
    |||||| |||||| |||| |||||||||| |||| |||||||||||||||||    
T  21864896 gtgtcccggtgtcggacacgtgtcgtgtccgacagcgacacttgtaattaca 21864845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 496 - 554
Target Start/End: Original strand, 7973094 - 7973152
Alignment:
Q  496 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    |||||| | |||| |||||||||||||||| ||||| ||| ||||||||||||| ||||    
T  7973094 gtgtcccgatgtcggacatgtgtcgtgtctcacaccaacatttgtaattacattaaatt 7973152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 525 - 554
Target Start/End: Complemental strand, 7438765 - 7438736
Alignment:
Q  525 tgacaccgacacttgtaattacattgaatt 554  Q
    ||||||||||||||||||||||||||||||    
T  7438765 tgacaccgacacttgtaattacattgaatt 7438736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 503 - 576
Target Start/End: Complemental strand, 13307958 - 13307883
Alignment:
Q  503 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 576  Q
    |||||| |||| |||||||||| |||||| |||||||| ||||||||||||  |||||||||||||||||||||||    
T  13307958 ggtgtctgacacgtgtcgtgtccgacaccaacacttgtgattacattgaattatgtcattttctcaaaattttatc 13307883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 496 - 576
Target Start/End: Complemental strand, 44362754 - 44362672
Alignment:
Q  496 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 576  Q
    |||||| | ||||||| | ||||||||||||||||| |||||||| |||||||| |||  |||||||||||||||||||||||    
T  44362754 gtgtcccgatgtccgatacgtgtcgtgtctgacaccaacacttgtgattacattaaattatgtcattttctcaaaattttatc 44362672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 496 - 554
Target Start/End: Complemental strand, 29205532 - 29205474
Alignment:
Q  496 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    |||||| |||||| |||||||||||||||  ||||||||||||||||||||| ||||||    
T  29205532 gtgtcccggtgtcggacatgtgtcgtgtccaacaccgacacttgtaattacactgaatt 29205474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 497 - 554
Target Start/End: Original strand, 12797310 - 12797367
Alignment:
Q  497 tgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    ||||| |||||| ||||||| ||||||| |||||||||||||||||||||| ||||||    
T  12797310 tgtcccggtgtcagacatgtatcgtgtccgacaccgacacttgtaattacactgaatt 12797367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 503 - 568
Target Start/End: Complemental strand, 21945584 - 21945517
Alignment:
Q  503 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaa 568  Q
    |||||| |||||||||| |||| |||||||||||||||||||||| |||||  ||||||||| |||||    
T  21945584 ggtgtcggacatgtgtcatgtccgacaccgacacttgtaattacactgaattatgtcattttttcaaa 21945517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 520 - 575
Target Start/End: Complemental strand, 13117493 - 13117436
Alignment:
Q  520 gtgtctgacaccgacacttgtaattacattgaa--ttgtcattttctcaaaattttat 575  Q
    ||||| ||||||||||||||| |||||||||||  ||||||||||||| |||||||||    
T  13117493 gtgtccgacaccgacacttgtgattacattgaattttgtcattttctccaaattttat 13117436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 504 - 554
Target Start/End: Complemental strand, 16073474 - 16073424
Alignment:
Q  504 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    ||||| ||||||| ||||||| |||||||||||||||||||||| ||||||    
T  16073474 gtgtcggacatgtatcgtgtccgacaccgacacttgtaattacactgaatt 16073424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 496 - 554
Target Start/End: Original strand, 23292957 - 23293015
Alignment:
Q  496 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    |||||| |||||| |||| |||||||||| |||||||||||||||||||| | ||||||    
T  23292957 gtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattatactgaatt 23293015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 503 - 544
Target Start/End: Complemental strand, 4157230 - 4157189
Alignment:
Q  503 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 544  Q
    |||||| ||||||||||||||| |||||||||||||||||||    
T  4157230 ggtgtcggacatgtgtcgtgtccgacaccgacacttgtaatt 4157189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 503 - 544
Target Start/End: Complemental strand, 4157517 - 4157476
Alignment:
Q  503 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 544  Q
    |||||| ||||||||||||||| |||||||||||||||||||    
T  4157517 ggtgtcggacatgtgtcgtgtccgacaccgacacttgtaatt 4157476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 503 - 547
Target Start/End: Original strand, 34306782 - 34306826
Alignment:
Q  503 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 547  Q
    |||||| |||| |||||||||| ||||||||||||||||||||||    
T  34306782 ggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattaca 34306826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 258 - 328
Target Start/End: Original strand, 21570830 - 21570900
Alignment:
Q  258 ataaccgtcaaattattataaacgtttgaattctatcattaccacttctgaagtcagacacatgattggtt 328  Q
    |||||||||| || |||| ||| |||||| || |||||| || |||||| |||||| ||||||||||||||    
T  21570830 ataaccgtcacataattagaaatgtttgacttttatcatgacgacttctaaagtcacacacatgattggtt 21570900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 504 - 554
Target Start/End: Original strand, 28964227 - 28964277
Alignment:
Q  504 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    ||||| || |||||||||||| ||||| |||||||||||||||| ||||||    
T  28964227 gtgtcggatatgtgtcgtgtccgacacagacacttgtaattacactgaatt 28964277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 496 - 554
Target Start/End: Complemental strand, 49431114 - 49431056
Alignment:
Q  496 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    |||||| |||||  |||| |||||||||| ||||||||||||| |||||||| ||||||    
T  49431114 gtgtcccggtgttggacacgtgtcgtgtccgacaccgacacttttaattacactgaatt 49431056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 510 - 547
Target Start/End: Original strand, 35157970 - 35158007
Alignment:
Q  510 gacatgtgtcgtgtctgacaccgacacttgtaattaca 547  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  35157970 gacatgtgtcgtgtcagacaccgacacttataattaca 35158007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 569
Target Start/End: Complemental strand, 37496761 - 37496717
Alignment:
Q  527 acaccgacacttgtaattacattgaat--tgtcattttctcaaaa 569  Q
    |||||||||||||| ||||||||||||  ||||||||||||||||    
T  37496761 acaccgacacttgtgattacattgaattatgtcattttctcaaaa 37496717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 496 - 547
Target Start/End: Original strand, 18840984 - 18841035
Alignment:
Q  496 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 547  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  18840984 gtgtcccggtgtcggacatgtgtcgtgtctgacaccgacacttgtaattaca 18841035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 504 - 576
Target Start/End: Original strand, 43585984 - 43586058
Alignment:
Q  504 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 576  Q
    ||||| |||| || ||||||| ||||||||||||||| ||||||||||||  |||||||||||||||||||||||    
T  43585984 gtgtctgacacgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcattttctcaaaattttatc 43586058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 496 - 554
Target Start/End: Original strand, 2438690 - 2438748
Alignment:
Q  496 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    |||||| |||||| ||||||||||||||| |||||||||||||||||||||| ||||||    
T  2438690 gtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaatt 2438748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 497 - 554
Target Start/End: Original strand, 30404822 - 30404879
Alignment:
Q  497 tgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    ||||| |||||| ||||||||||||||| ||| |||||||||||||||||| ||||||    
T  30404822 tgtcctggtgtcggacatgtgtcgtgtccgacgccgacacttgtaattacactgaatt 30404879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 496 - 556
Target Start/End: Complemental strand, 15972961 - 15972901
Alignment:
Q  496 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaattgt 556  Q
    |||||| || ||| |||| |||||||||| |||||||||||||||||||||| ||||||||    
T  15972961 gtgtcccggcgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaattgt 15972901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 505 - 574
Target Start/End: Complemental strand, 24067829 - 24067758
Alignment:
Q  505 tgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaatttta 574  Q
    |||| |||| |||||||||||||||||||||||||| ||| |||| |||  || ||||||||||||||||||    
T  24067829 tgtctgacacgtgtcgtgtctgacaccgacacttgtgatttcatttaattatgacattttctcaaaatttta 24067758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 520 - 577
Target Start/End: Original strand, 37491850 - 37491909
Alignment:
Q  520 gtgtctgacaccgacacttgtaattacattgaatt--gtcattttctcaaaattttatca 577  Q
    ||||||||||||||||| | |||||||||||||||  || ||||||||||||||||||||    
T  37491850 gtgtctgacaccgacacatttaattacattgaattaagttattttctcaaaattttatca 37491909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 516 - 554
Target Start/End: Complemental strand, 5040802 - 5040764
Alignment:
Q  516 tgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  5040802 tgtcgtgtccgacaccgacacttgtaattacattgaatt 5040764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 493 - 547
Target Start/End: Complemental strand, 28596560 - 28596506
Alignment:
Q  493 ggagtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 547  Q
    |||||||||| ||||| |||| |||||||||| ||||||||||||| ||||||||    
T  28596560 ggagtgtccgagtgtcggacacgtgtcgtgtccgacaccgacacttataattaca 28596506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 526 - 576
Target Start/End: Complemental strand, 33884109 - 33884057
Alignment:
Q  526 gacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 576  Q
    |||||||||||||||||||||| |||||  ||||||||||||| |||||||||    
T  33884109 gacaccgacacttgtaattacactgaatcatgtcattttctcacaattttatc 33884057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 496 - 552
Target Start/End: Complemental strand, 21091811 - 21091755
Alignment:
Q  496 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaa 552  Q
    |||||| ||||||||||| ||| | |||||||||| |||||||||||||||| ||||    
T  21091811 gtgtcccggtgtccgacaggtggcttgtctgacactgacacttgtaattacactgaa 21091755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 503 - 554
Target Start/End: Complemental strand, 37559058 - 37559007
Alignment:
Q  503 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    |||||| |||| |||||  ||| |||||||||||||||||||||||||||||    
T  37559058 ggtgtcggacacgtgtcaagtccgacaccgacacttgtaattacattgaatt 37559007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 504 - 550
Target Start/End: Complemental strand, 12224303 - 12224257
Alignment:
Q  504 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattg 550  Q
    ||||| |||| || ||||||| |||||||||||||||||||||||||    
T  12224303 gtgtcggacacgtatcgtgtccgacaccgacacttgtaattacattg 12224257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 532 - 575
Target Start/End: Original strand, 37211892 - 37211937
Alignment:
Q  532 gacacttgtaattacattgaat--tgtcattttctcaaaattttat 575  Q
    ||||||||||||||||||||||  |||||||||||| |||||||||    
T  37211892 gacacttgtaattacattgaattgtgtcattttctcgaaattttat 37211937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 496 - 554
Target Start/End: Complemental strand, 31557084 - 31557026
Alignment:
Q  496 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    |||||| |||||| |||||||||||||||||||||||| ||||||||||||| ||||||    
T  31557084 gtgtcctggtgtcggacatgtgtcgtgtctgacaccgaaacttgtaattacactgaatt 31557026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 505 - 570
Target Start/End: Complemental strand, 42874601 - 42874534
Alignment:
Q  505 tgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaat 570  Q
    |||||||||||||| |||||  |||| ||||||||| ||||||||||||  |||||||||||||||||    
T  42874601 tgtccgacatgtgttgtgtccaacactgacacttgtgattacattgaattatgtcattttctcaaaat 42874534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 29705884 - 29705943
Alignment:
Q  254 aattataaccgtcaaattattataaacgtttgaattctatcattaccacttctgaagtca 313  Q
    |||||||||||| |||| ||||||||||||||| || |||||| ||||||||| ||||||    
T  29705884 aattataaccgttaaatcattataaacgtttgacttttatcataaccacttctaaagtca 29705943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 496 - 556
Target Start/End: Original strand, 44462166 - 44462226
Alignment:
Q  496 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaattgt 556  Q
    |||||| |||||| ||||||| ||||||||||||||||||| | | |||| ||||||||||    
T  44462166 gtgtcccggtgtcggacatgtatcgtgtctgacaccgacacatatgattaaattgaattgt 44462226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 496 - 556
Target Start/End: Original strand, 44469699 - 44469759
Alignment:
Q  496 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaattgt 556  Q
    |||||| |||||| ||||||| ||||||||||||||||||| | | |||| ||||||||||    
T  44469699 gtgtcccggtgtcggacatgtatcgtgtctgacaccgacacatatgattaaattgaattgt 44469759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 496 - 547
Target Start/End: Complemental strand, 5813680 - 5813629
Alignment:
Q  496 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 547  Q
    |||||| |||||| |||| |||||||||| |||||||||||||||| |||||    
T  5813680 gtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtatttaca 5813629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 496 - 547
Target Start/End: Original strand, 33405355 - 33405406
Alignment:
Q  496 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 547  Q
    |||||| |||||| ||||||||||||||| ||||||||||| | ||||||||    
T  33405355 gtgtccaggtgtcagacatgtgtcgtgtccgacaccgacacatataattaca 33405406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 504 - 554
Target Start/End: Complemental strand, 18407799 - 18407749
Alignment:
Q  504 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    ||||| ||||||||||||||| | || ||||||||||||||||| ||||||    
T  18407799 gtgtcggacatgtgtcgtgtccggcagcgacacttgtaattacactgaatt 18407749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 525 - 576
Target Start/End: Complemental strand, 27733906 - 27733853
Alignment:
Q  525 tgacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 576  Q
    ||||||| |||||||| ||||||||||||  | |||||||||||||||||||||    
T  27733906 tgacaccaacacttgtgattacattgaattatatcattttctcaaaattttatc 27733853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 496 - 554
Target Start/End: Original strand, 36450725 - 36450783
Alignment:
Q  496 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    |||||| |||||| |||| | |||||||| |||||| ||||||||||||||| ||||||    
T  36450725 gtgtcctggtgtcggacacgcgtcgtgtccgacacctacacttgtaattacactgaatt 36450783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 576
Target Start/End: Original strand, 24295138 - 24295190
Alignment:
Q  526 gacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 576  Q
    ||||||||||||||| |||||||| |||  ||||||||||||| |||||||||    
T  24295138 gacaccgacacttgtgattacattaaattgtgtcattttctcacaattttatc 24295190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 576
Target Start/End: Original strand, 25104613 - 25104646
Alignment:
Q  543 ttacattgaattgtcattttctcaaaattttatc 576  Q
    |||||||||||||||||||| |||||||||||||    
T  25104613 ttacattgaattgtcattttgtcaaaattttatc 25104646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 510 - 568
Target Start/End: Complemental strand, 40332265 - 40332205
Alignment:
Q  510 gacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaa 568  Q
    |||| ||||||||||  ||||||||||||||||||||| |||||  ||| |||||||||||    
T  40332265 gacacgtgtcgtgtcccacaccgacacttgtaattacactgaattatgtgattttctcaaa 40332205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 496 - 554
Target Start/End: Complemental strand, 1815345 - 1815287
Alignment:
Q  496 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    |||||| |||||| ||||||||||||||| |||||||||||||||||||||| ||||||    
T  1815345 gtgtcccggtgtcggacatgtgtcgtgtcggacaccgacacttgtaattacactgaatt 1815287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 496 - 554
Target Start/End: Original strand, 40258904 - 40258962
Alignment:
Q  496 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    |||||| |||||| |||| ||||||||||||||||||||||||||||||||| ||||||    
T  40258904 gtgtcctggtgtcggacaggtgtcgtgtctgacaccgacacttgtaattacactgaatt 40258962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 511 - 554
Target Start/End: Original strand, 38078647 - 38078690
Alignment:
Q  511 acatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  38078647 acatgtgtcgtgtccgacaccgacacttgtaattacattgaatt 38078690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 496 - 554
Target Start/End: Original strand, 18190079 - 18190137
Alignment:
Q  496 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    |||||| |||||| |||| |||| |||||||||| ||||||||||||||||| ||||||    
T  18190079 gtgtcccggtgtcggacacgtgttgtgtctgacatcgacacttgtaattacactgaatt 18190137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 503 - 547
Target Start/End: Original strand, 22515865 - 22515909
Alignment:
Q  503 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 547  Q
    |||||| || |||||||||||| ||||||||||||||||||||||    
T  22515865 ggtgtcggatatgtgtcgtgtccgacaccgacacttgtaattaca 22515909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 503 - 547
Target Start/End: Original strand, 46348361 - 46348405
Alignment:
Q  503 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 547  Q
    |||||| |||| |||||||||| ||||||||||||||||||||||    
T  46348361 ggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattaca 46348405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 554
Target Start/End: Complemental strand, 51410094 - 51410055
Alignment:
Q  515 gtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  51410094 gtgtcgtgtccgacaccgacacttgtaattacactgaatt 51410055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 504 - 554
Target Start/End: Complemental strand, 18337409 - 18337359
Alignment:
Q  504 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    ||||| |||| |||| ||||| |||||||||||||||||||||| ||||||    
T  18337409 gtgtcggacacgtgttgtgtccgacaccgacacttgtaattacactgaatt 18337359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 504 - 545
Target Start/End: Complemental strand, 21530769 - 21530728
Alignment:
Q  504 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaatta 545  Q
    ||||| ||||||||||||||| ||||||||||||| ||||||    
T  21530769 gtgtcggacatgtgtcgtgtccgacaccgacacttataatta 21530728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 505 - 554
Target Start/End: Complemental strand, 37598910 - 37598861
Alignment:
Q  505 tgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    |||| |||| |||||||||| ||||||||||||| |||||||| ||||||    
T  37598910 tgtcggacacgtgtcgtgtccgacaccgacacttataattacactgaatt 37598861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 496 - 547
Target Start/End: Original strand, 32978870 - 32978921
Alignment:
Q  496 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 547  Q
    |||||| |||||| ||||||||||||||| ||||||||||||||||||||||    
T  32978870 gtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattaca 32978921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 521 - 576
Target Start/End: Original strand, 6751878 - 6751935
Alignment:
Q  521 tgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 576  Q
    |||| ||||||||||||||| ||||||||||||  |||||||||||||||||||||||    
T  6751878 tgtccgacaccgacacttgtgattacattgaattatgtcattttctcaaaattttatc 6751935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 496 - 554
Target Start/End: Complemental strand, 34595222 - 34595164
Alignment:
Q  496 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    |||||| |||||| |||| |||||||||| |||||||||||||||||||||| ||||||    
T  34595222 gtgtcccggtgtcagacacgtgtcgtgtccgacaccgacacttgtaattacactgaatt 34595164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 526 - 576
Target Start/End: Complemental strand, 19369875 - 19369823
Alignment:
Q  526 gacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 576  Q
    ||||||||||||||| ||||||||||||  |||||||||||||||||||||||    
T  19369875 gacaccgacacttgtgattacattgaattatgtcattttctcaaaattttatc 19369823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 497 - 554
Target Start/End: Complemental strand, 28152185 - 28152128
Alignment:
Q  497 tgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    ||||| |||||| |||| |||||||||| |||||||||||||||||||||| ||||||    
T  28152185 tgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaatt 28152128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 496 - 568
Target Start/End: Complemental strand, 28715383 - 28715309
Alignment:
Q  496 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaa 568  Q
    |||||| ||||||  ||| |||||||||| |||||||||||||||||||||| |||||  ||||||||| |||||    
T  28715383 gtgtcccggtgtcgaacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtcattttttcaaa 28715309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 496 - 576
Target Start/End: Original strand, 32225361 - 32225443
Alignment:
Q  496 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 576  Q
    |||||| ||||||||||| | |||||||| ||||||||||| ||| |||||||||| |   || |||||||||||||||||||    
T  32225361 gtgtccaggtgtccgacaggggtcgtgtccgacaccgacacctgtgattacattgactcacgttattttctcaaaattttatc 32225443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 510 - 564
Target Start/End: Complemental strand, 30851674 - 30851620
Alignment:
Q  510 gacatgtgtcgtgtctgacaccgacacttgtaattacattgaattgtcattttct 564  Q
    |||| |||||||||| ||||||||||| | ||||||||||||||||| |||||||    
T  30851674 gacacgtgtcgtgtccgacaccgacacatataattacattgaattgtgattttct 30851620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 504 - 545
Target Start/End: Complemental strand, 4878023 - 4877982
Alignment:
Q  504 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaatta 545  Q
    ||||| ||||||||||||||| ||||||||||||||||||||    
T  4878023 gtgtcggacatgtgtcgtgtccgacaccgacacttgtaatta 4877982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 503 - 578
Target Start/End: Original strand, 26402658 - 26402737
Alignment:
Q  503 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtca--ttttctcaaaattttatcat 578  Q
    ||||||| |||||| ||||||| ||||||||||||||| |||||| |||||  |||||  |||| |||||||||||||||    
T  26402658 ggtgtccaacatgtatcgtgtccgacaccgacacttgtgattacactgaattatgtcattttttttcaaaattttatcat 26402737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 496 - 552
Target Start/End: Complemental strand, 16833396 - 16833340
Alignment:
Q  496 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaa 552  Q
    |||||| |||||| |||  ||||||||||| ||||||||||||||||||||| ||||    
T  16833396 gtgtcctggtgtcggacgcgtgtcgtgtctaacaccgacacttgtaattacactgaa 16833340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 503 - 542
Target Start/End: Complemental strand, 24645562 - 24645523
Alignment:
Q  503 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaa 542  Q
    |||||| |||| ||||||||||||||||||||||||||||    
T  24645562 ggtgtcggacacgtgtcgtgtctgacaccgacacttgtaa 24645523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 533 - 576
Target Start/End: Complemental strand, 10031621 - 10031576
Alignment:
Q  533 acacttgtaattacattgaatt--gtcattttctcaaaattttatc 576  Q
    |||||||| |||||||||||||  ||||||||||||||||||||||    
T  10031621 acacttgtgattacattgaattatgtcattttctcaaaattttatc 10031576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 526 - 556
Target Start/End: Original strand, 15489733 - 15489763
Alignment:
Q  526 gacaccgacacttgtaattacattgaattgt 556  Q
    |||||||||||||||||||||||||||||||    
T  15489733 gacaccgacacttgtaattacattgaattgt 15489763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 526 - 581
Target Start/End: Complemental strand, 22746015 - 22745958
Alignment:
Q  526 gacaccgacacttgtaattacattgaattgt--cattttctcaaaattttatcatgtc 581  Q
    ||||||||||||||| ||||||||||| | |  |||||||||||||||||||| ||||    
T  22746015 gacaccgacacttgtgattacattgaaatataacattttctcaaaattttatcgtgtc 22745958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 372 - 434
Target Start/End: Complemental strand, 28077277 - 28077215
Alignment:
Q  372 ggctctgttagataaatatagtggatagttgataagctaccttatagtttatagcggatagct 434  Q
    ||||||||| | |||| |||| |||||||| ||||||||||| |||| ||||||| |||||||    
T  28077277 ggctctgtttggtaaaaatagcggatagtttataagctacctgatagcttatagctgatagct 28077215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 574
Target Start/End: Complemental strand, 7378047 - 7377987
Alignment:
Q  516 tgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaatttta 574  Q
    ||||||||| ||||||||||| | ||||||||||||||  ||| ||||||||||| |||||    
T  7378047 tgtcgtgtccgacaccgacacatataattacattgaattatgtgattttctcaaattttta 7377987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 505 - 554
Target Start/End: Original strand, 7977810 - 7977859
Alignment:
Q  505 tgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    |||| ||||| ||| ||||| |||||||||||||||||||||| ||||||    
T  7977810 tgtcggacatatgttgtgtccgacaccgacacttgtaattacactgaatt 7977859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 505 - 554
Target Start/End: Original strand, 27904016 - 27904065
Alignment:
Q  505 tgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    |||| ||| ||| |||||||||||||||||| ||||||||||| ||||||    
T  27904016 tgtcagacttgtctcgtgtctgacaccgacatttgtaattacactgaatt 27904065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 503 - 554
Target Start/End: Original strand, 45508 - 45559
Alignment:
Q  503 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    |||||| |||| |||||||||| |||||||||||||||||||||| ||||||    
T  45508 ggtgtcagacacgtgtcgtgtccgacaccgacacttgtaattacactgaatt 45559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 496 - 547
Target Start/End: Complemental strand, 42893448 - 42893397
Alignment:
Q  496 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 547  Q
    |||||| |||||| |||| |||| ||||||||||||||||||||||||||||    
T  42893448 gtgtcctggtgtcggacacgtgttgtgtctgacaccgacacttgtaattaca 42893397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 531 - 576
Target Start/End: Complemental strand, 15302576 - 15302531
Alignment:
Q  531 cgacacttgtaattacattgaattgtcattttctcaaaattttatc 576  Q
    |||||||||| ||||| ||||||||||||||| |||||||||||||    
T  15302576 cgacacttgtgattaccttgaattgtcattttttcaaaattttatc 15302531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 577
Target Start/End: Original strand, 30080503 - 30080555
Alignment:
Q  527 acaccgacacttgtaattacattgaatt--gtcattttctcaaaattttatca 577  Q
    ||||||| |||||| |||||||||||||  |||||||||||||||||||||||    
T  30080503 acaccgatacttgtgattacattgaattatgtcattttctcaaaattttatca 30080555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 520 - 556
Target Start/End: Original strand, 19167571 - 19167607
Alignment:
Q  520 gtgtctgacaccgacacttgtaattacattgaattgt 556  Q
    ||||||||||||||||||||| |||||||||||||||    
T  19167571 gtgtctgacaccgacacttgtgattacattgaattgt 19167607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 554
Target Start/End: Complemental strand, 15884057 - 15884018
Alignment:
Q  515 gtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  15884057 gtgtcgtgtccgacaccgacacttgtaattacactgaatt 15884018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 496 - 568
Target Start/End: Complemental strand, 27932323 - 27932249
Alignment:
Q  496 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaa 568  Q
    |||||| ||||||||||| |||||||||| |||||| | | ||||||||||| |||||  ||| |||||||||||    
T  27932323 gtgtcctggtgtccgacacgtgtcgtgtccgacaccaagatttgtaattacactgaattatgtaattttctcaaa 27932249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 496 - 568
Target Start/End: Original strand, 28588645 - 28588719
Alignment:
Q  496 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaa 568  Q
    |||||| |||||| || |||||||||||| ||||||||||| | |||||||| |||||  ||| |||||||||||    
T  28588645 gtgtcctggtgtcagatatgtgtcgtgtccgacaccgacacctataattacactgaattatgtgattttctcaaa 28588719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 568
Target Start/End: Original strand, 30502367 - 30502433
Alignment:
Q  504 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt--gtcattttctcaaa 568  Q
    ||||| ||||||||||||||| ||||||||||| | |||||||| ||||||  || |||||||||||    
T  30502367 gtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattaagtgattttctcaaa 30502433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 568
Target Start/End: Original strand, 30542710 - 30542776
Alignment:
Q  504 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt--gtcattttctcaaa 568  Q
    ||||| ||||||||||||||| ||||||||||| | |||||||| ||||||  || |||||||||||    
T  30542710 gtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattaagtgattttctcaaa 30542776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 496 - 554
Target Start/End: Original strand, 21191027 - 21191085
Alignment:
Q  496 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    |||||| || ||| |||| |||| ||||| |||||||||||||||||||||| ||||||    
T  21191027 gtgtcccggagtcggacacgtgttgtgtccgacaccgacacttgtaattacactgaatt 21191085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 504 - 554
Target Start/End: Original strand, 21576724 - 21576774
Alignment:
Q  504 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    ||||| |||| |||||||||| |||| ||||||||||||||||| ||||||    
T  21576724 gtgtcagacacgtgtcgtgtccgacatcgacacttgtaattacactgaatt 21576774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 384 - 434
Target Start/End: Original strand, 22976404 - 22976454
Alignment:
Q  384 taaatatagtggatagttgataagctaccttatagtttatagcggatagct 434  Q
    |||| |||| |||||| |||||||||| ||||||||||||||| |||||||    
T  22976404 taaaaatagcggatagctgataagctagcttatagtttatagctgatagct 22976454  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 33695405 - 33695359
Alignment:
Q  384 taaatatagtggatagttgataagctaccttatagtttatagcggat 430  Q
    |||| |||| ||||||||||||||||| || ||||||||||||||||    
T  33695405 taaaaatagcggatagttgataagctagctgatagtttatagcggat 33695359  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 497 - 554
Target Start/End: Original strand, 23012380 - 23012437
Alignment:
Q  497 tgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    ||||| |||||| |||||||||||||||  |||||||||| | |||||||||| ||||    
T  23012380 tgtcccggtgtcagacatgtgtcgtgtccaacaccgacacatataattacattaaatt 23012437  T

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Target: scaffold0652 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 496 - 554
Target Start/End: Original strand, 433 - 491
Alignment:
Q  496 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    |||||| |||||| |||| | |||||||| |||||||||||||||||||||| ||||||    
T  433 gtgtcccggtgtcggacacgcgtcgtgtccgacaccgacacttgtaattacactgaatt 491  T

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Target: scaffold0314 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 576
Target Start/End: Complemental strand, 9007 - 8954
Alignment:
Q  525 tgacaccgacacttgtaattacattgaatt--gtcattttctcaaaattttatc 576  Q
    |||||||||||||||| ||||| |||||||  ||||||||||||||||||||||    
T  9007 tgacaccgacacttgtgattacgttgaattatgtcattttctcaaaattttatc 8954  T

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Target: scaffold0050 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 497 - 554
Target Start/End: Complemental strand, 70365 - 70308
Alignment:
Q  497 tgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 554  Q
    ||||| |||||| |||| |||||||||| ||||||||||||| |||||||| ||||||    
T  70365 tgtcctggtgtcggacacgtgtcgtgtccgacaccgacacttataattacactgaatt 70308  T

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Target: scaffold0053 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 503 - 547
Target Start/End: Complemental strand, 8879 - 8835
Alignment:
Q  503 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 547  Q
    |||||| |||| |||||||||| ||||||||||||||||||||||    
T  8879 ggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattaca 8835  T

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Target: scaffold0512 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 505 - 547
Target Start/End: Original strand, 5016 - 5058
Alignment:
Q  505 tgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 547  Q
    |||| |||| |||||||||| ||||||||||||||||||||||    
T  5016 tgtcggacacgtgtcgtgtccgacaccgacacttgtaattaca 5058  T

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Target: scaffold0697 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 504 - 545
Target Start/End: Complemental strand, 1724 - 1683
Alignment:
Q  504 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaatta 545  Q
    ||||| ||||||||||||||| ||||||||||||| ||||||    
T  1724 gtgtcggacatgtgtcgtgtccgacaccgacacttataatta 1683  T

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