View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20608_low_24 (Length: 241)
Name: NF20608_low_24
Description: NF20608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20608_low_24 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 3 - 241
Target Start/End: Complemental strand, 7723068 - 7722837
Alignment:
| Q |
3 |
acatattttgatgcatgacgaaggctgtaccaaaaagaatggaaaataattaaaggtaatcgatacataaataacgaaatagaagtttgtgagtttagtg |
102 |
Q |
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| T |
7723068 |
acattttttaatgcatgacgaaggctgtaccaaaaagaatggaaaataattaaaggtaatcgatacataaataacgaaatagaagtttgtgagtttagag |
7722969 |
T |
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| Q |
103 |
cttaaaaataaagtttgcgagtttcgctagattggtagagacattacataaaatatatatatggagattggaatttggaatttgaactctgaacatctta |
202 |
Q |
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| T |
7722968 |
cttaaaaataaagtttgcgagtttcgctagattggtagggacattatataaaatatacatatggaga-------ttgaaatttgaactctgaacaccttg |
7722876 |
T |
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| Q |
203 |
tttatttattttaaaagggtgaatttctagtcactagat |
241 |
Q |
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| T |
7722875 |
tttattcattttaaaatggtgaatttctagtcattagat |
7722837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 7729290 - 7729206
Alignment:
| Q |
1 |
atacatattttgatgcatgacgaaggctgtaccaaaaagaatggaaaataattaaaggta-atcgatacataaataacgaaataga |
85 |
Q |
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| T |
7729290 |
atacattttttgatgcatgacgaaggctatacc-aaaagaatggaaaacaattaaaggtatatcgatacataaataactaaataga |
7729206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 7715352 - 7715288
Alignment:
| Q |
23 |
aaggctgtaccaaaaagaatggaaaataattaaaggta-atcgatacataaataacgaaatagaa |
86 |
Q |
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| T |
7715352 |
aaggctatgccaaaaagaatggaaaataattaaaggtatatcgatacataaataactaaacagaa |
7715288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 1407605 - 1407563
Alignment:
| Q |
186 |
gaactctgaacatcttatttatttattttaaaagggtgaattt |
228 |
Q |
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| T |
1407605 |
gaactctgaacatctcacttatttatcttaaaagggtgaattt |
1407563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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