View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20608_low_26 (Length: 231)

Name: NF20608_low_26
Description: NF20608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20608_low_26
NF20608_low_26
[»] chr5 (22 HSPs)
chr5 (11-231)||(7193578-7193798)
chr5 (11-231)||(10659503-10659723)
chr5 (11-228)||(10651620-10651837)
chr5 (11-217)||(9827377-9827583)
chr5 (11-217)||(9835746-9835952)
chr5 (10-80)||(10587894-10587964)
chr5 (5-174)||(10612339-10612508)
chr5 (11-86)||(10551518-10551593)
chr5 (6-217)||(10605338-10605549)
chr5 (142-231)||(10588008-10588097)
chr5 (4-76)||(10581722-10581794)
chr5 (6-70)||(10739838-10739902)
chr5 (6-70)||(10762253-10762317)
chr5 (13-76)||(10565730-10565793)
chr5 (11-70)||(10746449-10746508)
chr5 (11-70)||(10559631-10559690)
chr5 (51-120)||(10760796-10760865)
chr5 (6-70)||(10716401-10716465)
chr5 (105-217)||(10739937-10740049)
chr5 (135-217)||(10559484-10559566)
chr5 (11-61)||(19605284-19605334)
chr5 (105-169)||(10762352-10762416)
[»] chr6 (5 HSPs)
chr6 (5-90)||(12958770-12958855)
chr6 (5-217)||(12907755-12907967)
chr6 (5-76)||(12900279-12900350)
chr6 (5-62)||(12949339-12949396)
chr6 (5-217)||(12932844-12933056)
[»] chr2 (1 HSPs)
chr2 (5-90)||(17922829-17922914)
[»] chr3 (1 HSPs)
chr3 (7-86)||(31466571-31466650)
[»] chr8 (1 HSPs)
chr8 (7-67)||(30363948-30364008)


Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 7193798 - 7193578
Alignment:
Q  11 tcattctttcttttggtgattccactgaacaagcaagtccaatcctaaaaagtgaaactacgcacttctctacatttggagtgaaatttccactgtttcc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7193798 tcattctttcttttggtgattccactgaacaagcaagtccaatcctaaaaagtgaaactacgcacttctctacatttggagtgaaatttccactgtttcc 7193699  T
Q  111 atcttctattgttgcttctatatttcttggtacaagatttgggtccaaaatatgtataagattattaggcaacgaaatttcaacaaaaatacgtagattt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7193698 atcttctattgttgcttctatatttcttggtacaagatttgggtccaaaatatgtataagattattaggcaacgaaatttcaacaaaaatacgtagattt 7193599  T
Q  211 tgaccattgtcaaacatttca 231  Q
    |||||||||||||||||||||    
T  7193598 tgaccattgtcaaacatttca 7193578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 10659503 - 10659723
Alignment:
Q  11 tcattctttcttttggtgattccactgaacaagcaagtccaatcctaaaaagtgaaactacgcacttctctacatttggagtgaaatttccactgtttcc 110  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||| ||||||||||||  |||||| |||||||||||| |||||    
T  10659503 tcattctttcttttggtgatttcactgaacatgcaagtccaatccgaaaaagtgaaactaagcacttctctacgattggagggaaatttccactctttcc 10659602  T
Q  111 atcttctattgttgcttctatatttcttggtacaagatttgggtccaaaatatgtataagattattaggcaacgaaatttcaacaaaaatacgtagattt 210  Q
     ||||||||| | ||||||  ||||||||||||||||| |||||||||||| |||| || |||||| || || |||||||||||||| ||| | ||||||    
T  10659603 ttcttctattttggcttcttcatttcttggtacaagatgtgggtccaaaatctgtaaaatattatttggaaatgaaatttcaacaaatatatgcagattt 10659702  T
Q  211 tgaccattgtcaaacatttca 231  Q
    ||||| |  ||||||||||||    
T  10659703 tgaccctcttcaaacatttca 10659723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 10651620 - 10651837
Alignment:
Q  11 tcattctttcttttggtgattccactgaacaagcaagtccaatcctaaaaagtgaaactacgcacttctctacatttggagtgaaatttccactgtttcc 110  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||  |||||||||||| |||||||||||||||||| ||||||    
T  10651620 tcattctttcttttggtgatttcactgaacaagcaagtccaatcctgaaaagtgaaactaaacacttctctacagttggagtgaaatttccacagtttcc 10651719  T
Q  111 atcttctattgttgcttctatatttcttggtacaagatttgggtccaaaatatgtataagattattaggcaacgaaatttcaacaaaaatacgtagattt 210  Q
     |||||||||  | |||||  ||||||||||||||||| ||| |||||||| ||||||| ||||||||| || |||||| ||||||| ||| | | ||||    
T  10651720 ttcttctatttcttcttcttcatttcttggtacaagatgtggatccaaaatctgtataatattattaggaaatgaaattccaacaaacatatgcaaattt 10651819  T
Q  211 tgaccattgtcaaacatt 228  Q
    ||||| |  |||||||||    
T  10651820 tgaccttcttcaaacatt 10651837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 217
Target Start/End: Original strand, 9827377 - 9827583
Alignment:
Q  11 tcattctttcttttggtgattccactgaacaagcaagtccaatcctaaaaagtgaaactacgcacttctctacatttggagtgaaatttccactgtttcc 110  Q
    ||||||||||||||||||||||   |||||| |||||||||||||| |||| |||||||| ||| |||| ||||  |||| | | |||  |||| |||||    
T  9827377 tcattctttcttttggtgattctcttgaacaggcaagtccaatccttaaaactgaaactaagcaattctttacagctggaataagattctcactatttcc 9827476  T
Q  111 atcttctattgttgcttctatatttcttggtacaagatttgggtccaaaatatgtataagattattaggcaacgaaatttcaacaaaaatacgtagattt 210  Q
    ||||||||||| |||||||  || ||||||||||| || | ||| |||||| |||  |||||||| ||  || ||| ||||| ||||  |||||||||||    
T  9827477 atcttctattgctgcttcttcatctcttggtacaaaatgttggttcaaaatctgtgaaagattatcagctaatgaactttcagcaaacgtacgtagattt 9827576  T
Q  211 tgaccat 217  Q
    |||||||    
T  9827577 tgaccat 9827583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 217
Target Start/End: Original strand, 9835746 - 9835952
Alignment:
Q  11 tcattctttcttttggtgattccactgaacaagcaagtccaatcctaaaaagtgaaactacgcacttctctacatttggagtgaaatttccactgtttcc 110  Q
    ||||||||||||||||||||||   |||||| |||||||||||||| |||| |||||||| ||| |||| ||||  |||| | | |||  |||| |||||    
T  9835746 tcattctttcttttggtgattctcttgaacaggcaagtccaatccttaaaactgaaactaagcaattctttacagctggaataagattctcactatttcc 9835845  T
Q  111 atcttctattgttgcttctatatttcttggtacaagatttgggtccaaaatatgtataagattattaggcaacgaaatttcaacaaaaatacgtagattt 210  Q
    ||||||||||| |||||||  || ||||||||||| || | |||||||||| |||  |||||||  ||  || ||| ||||| ||||  |||||||||||    
T  9835846 atcttctattgctgcttcttcatctcttggtacaaaatgttggtccaaaatctgtgaaagattaccagctaatgaactttcagcaaacgtacgtagattt 9835945  T
Q  211 tgaccat 217  Q
    |||||||    
T  9835946 tgaccat 9835952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 10587894 - 10587964
Alignment:
Q  10 ctcattctttcttttggtgattccactgaacaagcaagtccaatcctaaaaagtgaaactacgcacttctc 80  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||| |||||||||    
T  10587894 ctcattctttcttttggtgattccattgaacaagcaagtccaatccttagaagtgaaactaagcacttctc 10587964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 5 - 174
Target Start/End: Complemental strand, 10612508 - 10612339
Alignment:
Q  5 caatactcattctttcttttggtgattccactgaacaagcaagtccaatcctaaaaagtgaaactacgcacttctctacatttggagtgaaatttccact 104  Q
    ||||| ||||||||||||| |||||||||| |||||||  |||||||||||||||||||||||||| ||||| || || | ||||| | | |||  ||||    
T  10612508 caatattcattctttctttgggtgattccattgaacaaagaagtccaatcctaaaaagtgaaactaagcactcctttaaacttggaataagattctcact 10612409  T
Q  105 gtttccatcttctattgttgcttctatatttcttggtacaagatttgggtccaaaatatgtataagatta 174  Q
     |||||||||| ||||  | |||||  || | |||  ||||||| ||||||||| || | ||||||||||    
T  10612408 ctttccatcttgtatttctacttctgcatattttgacacaagatgtgggtccaagatctttataagatta 10612339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 10551593 - 10551518
Alignment:
Q  11 tcattctttcttttggtgattccactgaacaagcaagtccaatcctaaaaagtgaaactacgcacttctctacatt 86  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||| ||  || |||||||||||    
T  10551593 tcattctttcttttggtgattccactgaacaagaaagtgcaatcctaagaagtgaaagtaaacatttctctacatt 10551518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 217
Target Start/End: Complemental strand, 10605549 - 10605338
Alignment:
Q  6 aatactcattctttcttttggtgattccactgaacaagcaagtccaatcctaaaaagtgaaactacgcacttctctacatttggagtgaaatttccactg 105  Q
    |||| ||||||||||||| |||||||||| |||||||  ||||||||| |||||||||||||||| | | | ||||||  ||||| | | |||   |  |    
T  10605549 aatattcattctttctttcggtgattccattgaacaaataagtccaattctaaaaagtgaaactaaggattcctctacccttggaataagattcgtatgg 10605450  T
Q  106 tttccatcttctattgttgcttctatatttcttggtacaagatttgggtccaaaatatgtataagattattaggcaacgaaatttcaacaaaaatacgta 205  Q
    ||||||| |||||||| | |||||| || ||||| |||||| | |||||||||||| | | ||| ||||| ||| || ||| || |||||||  || | |    
T  10605449 tttccattttctattgctacttctacatctcttgttacaaggtgtgggtccaaaatctctttaatattatcaggaaatgaagttgcaacaaagttatgca 10605350  T
Q  206 gattttgaccat 217  Q
    ||||||||||||    
T  10605349 gattttgaccat 10605338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 10588008 - 10588097
Alignment:
Q  142 acaagatttgggtccaaaatatgtataagattattaggcaacgaaatttcaacaaaaatacgtagattttgaccattgtcaaacatttca 231  Q
    ||||||| |||||||||||| |||||||||||||   | || ||| |||||||||| ||| |||||||||||||||  ||||||||||||    
T  10588008 acaagatgtgggtccaaaatctgtataagattatcttgaaatgaactttcaacaaacatatgtagattttgaccatcttcaaacatttca 10588097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 10581794 - 10581722
Alignment:
Q  4 tcaatactcattctttcttttggtgattccactgaacaagcaagtccaatcctaaaaagtgaaactacgcact 76  Q
    |||||| ||| ||||||||||||||| |||| ||||||   |||||||||||||||||||||||||| |||||    
T  10581794 tcaatattcagtctttcttttggtgactccattgaacacataagtccaatcctaaaaagtgaaactaagcact 10581722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 10739838 - 10739902
Alignment:
Q  6 aatactcattctttcttttggtgattccactgaacaagcaagtccaatcctaaaaagtgaaacta 70  Q
    |||| ||||||||||||| |||||||||| |||||||  ||||||||| ||||||||||||||||    
T  10739838 aatattcattctttctttcggtgattccattgaacaaataagtccaattctaaaaagtgaaacta 10739902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 10762253 - 10762317
Alignment:
Q  6 aatactcattctttcttttggtgattccactgaacaagcaagtccaatcctaaaaagtgaaacta 70  Q
    |||| ||||||||||||| |||||||||| |||||||  ||||||||| ||||||||||||||||    
T  10762253 aatattcattctttctttcggtgattccattgaacaaataagtccaattctaaaaagtgaaacta 10762317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 10565793 - 10565730
Alignment:
Q  13 attctttcttttggtgattccactgaacaagcaagtccaatcctaaaaagtgaaactacgcact 76  Q
    ||||||||||||||||| |||| ||||||   |||||||||||||||||||||||||| |||||    
T  10565793 attctttcttttggtgactccattgaacacataagtccaatcctaaaaagtgaaactaagcact 10565730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 10746449 - 10746508
Alignment:
Q  11 tcattctttcttttggtgattccactgaacaagcaagtccaatcctaaaaagtgaaacta 70  Q
    |||||||||||||||||||||| | || ||||  ||||||||||||||||||||||||||    
T  10746449 tcattctttcttttggtgattcaattgtacaaataagtccaatcctaaaaagtgaaacta 10746508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 10559690 - 10559631
Alignment:
Q  11 tcattctttcttttggtgattccactgaacaagcaagtccaatcctaaaaagtgaaacta 70  Q
    ||||||||| | |||| |||||||| ||||| ||||||||||||||||| ||||||||||    
T  10559690 tcattctttgtgttggcgattccaccgaacatgcaagtccaatcctaaagagtgaaacta 10559631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 10760796 - 10760865
Alignment:
Q  51 aatcctaaaaagtgaaactacgcacttctctacatttggagtgaaatttccactgtttccatcttctatt 120  Q
    ||||||||| |||||||||| ||||||||||||| ||||| | | ||| ||| |||||||||||| ||||    
T  10760796 aatcctaaacagtgaaactaagcacttctctacacttggaataagattcccattgtttccatcttgtatt 10760865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 10716401 - 10716465
Alignment:
Q  6 aatactcattctttcttttggtgattccactgaacaagcaagtccaatcctaaaaagtgaaacta 70  Q
    |||| ||||||||||| | |||||||||| || |||| ||||||||||||| ||||| |||||||    
T  10716401 aatattcattctttctatcggtgattccattgtacaaacaagtccaatcctgaaaagagaaacta 10716465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 217
Target Start/End: Original strand, 10739937 - 10740049
Alignment:
Q  105 gtttccatcttctattgttgcttctatatttcttggtacaagatttgggtccaaaatatgtataagattattaggcaacgaaatttcaacaaaaatacgt 204  Q
    ||||||||||| ||||||| |||||| || ||||| | |||||| |||||||||||| | |||||  |||  ||| |||||| || | |||||  || ||    
T  10739937 gtttccatcttgtattgttacttctacatctcttgcttcaagatgtgggtccaaaatctctataatgttaccaggaaacgaagttgctacaaagttatgt 10740036  T
Q  205 agattttgaccat 217  Q
    |||||||||||||    
T  10740037 agattttgaccat 10740049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 217
Target Start/End: Complemental strand, 10559566 - 10559484
Alignment:
Q  135 tcttggtacaagatttgggtccaaaatatgtataagattattaggcaacgaaatttcaacaaaaatacgtagattttgaccat 217  Q
    ||||||||||| || |||||||||||| || |||| ||||||||| || ||| |||||||| | | | | |||||||||||||    
T  10559566 tcttggtacaatatgtgggtccaaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagattttgaccat 10559484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 19605284 - 19605334
Alignment:
Q  11 tcattctttcttttggtgattccactgaacaagcaagtccaatcctaaaaa 61  Q
    ||||||||||||| || |||||||  ||||| |||||||||||||||||||    
T  19605284 tcattctttctttgggagattccatcgaacaggcaagtccaatcctaaaaa 19605334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 10762352 - 10762416
Alignment:
Q  105 gtttccatcttctattgttgcttctatatttcttggtacaagatttgggtccaaaatatgtataa 169  Q
    ||||||||||| | ||||| |||||| || ||||| | |||||| |||||||||||||| |||||    
T  10762352 gtttccatcttgttttgttacttctacatctcttgcttcaagatgtgggtccaaaatatctataa 10762416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 12958855 - 12958770
Alignment:
Q  5 caatactcattctttcttttggtgattccactgaacaagcaagtccaatcctaaaaagtgaaactacgcacttctctacatttgga 90  Q
    ||||| |||||||||||||||||||||||| ||||||   |||||||||||||||||||||||||| ||||| ||||||| |||||    
T  12958855 caatattcattctttcttttggtgattccaatgaacataaaagtccaatcctaaaaagtgaaactaagcactcctctacagttgga 12958770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 217
Target Start/End: Complemental strand, 12907967 - 12907755
Alignment:
Q  5 caatactcattctttcttttggtgattccactgaacaagcaagtccaatcctaaaaagtgaaactacgcacttctctacatttggagtgaaatttccact 104  Q
    ||||| ||||||||||||||| |||||||| ||||||   ||||||||||||||||||||||  || ||||| ||||||||||||| | | | |  ||      
T  12907967 caatattcattctttcttttgttgattccaatgaacataaaagtccaatcctaaaaagtgaagttaagcactcctctacatttggaataagaatctcatg 12907868  T
Q  105 gtttccatcttctattgttgcttctatatttcttggtacaagatttgggtccaaaatatgtataagattattaggcaacgaaatttcaacaaaaatacgt 204  Q
      ||||||||||||||  | |||||  |  |||||||| ||||| ||| |||||||| | ||||||||||| ||| || ||||||  ||||||  || |     
T  12907867 aattccatcttctattcctccttcttcagctcttggtaaaagatgtggatccaaaatctttataagattatcaggaaatgaaattgtaacaaagttatgc 12907768  T
Q  205 agattttgaccat 217  Q
    |||||||||||||    
T  12907767 agattttgaccat 12907755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 12900350 - 12900279
Alignment:
Q  5 caatactcattctttcttttggtgattccactgaacaagcaagtccaatcctaaaaagtgaaactacgcact 76  Q
    ||||| ||||||||||||||||||||||||  |||||   |||| ||||||||| ||||||||||| |||||    
T  12900350 caatattcattctttcttttggtgattccaaagaacataaaagtgcaatcctaagaagtgaaactaagcact 12900279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 12949396 - 12949339
Alignment:
Q  5 caatactcattctttcttttggtgattccactgaacaagcaagtccaatcctaaaaag 62  Q
    ||||| |||||||||| |||| |||||||| |||||||  ||||||||||||||||||    
T  12949396 caatattcattctttcatttgatgattccaatgaacaaaaaagtccaatcctaaaaag 12949339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 217
Target Start/End: Complemental strand, 12933056 - 12932844
Alignment:
Q  5 caatactcattctttcttttggtgattccactgaacaagcaagtccaatcctaaaaagtgaaactacgcacttctctacatttggagtgaaatttccact 104  Q
    ||||| ||||||||||||||||||||||||  |||||   |||| ||||||||| ||||||||| | ||| |  |||| | ||||| |   | |  ||      
T  12933056 caatattcattctttcttttggtgattccaaagaacataaaagtgcaatcctaagaagtgaaacaaagcaatcttctatagttggaatatgaatctcatg 12932957  T
Q  105 gtttccatcttctattgttgcttctatatttcttggtacaagatttgggtccaaaatatgtataagattattaggcaacgaaatttcaacaaaaatacgt 204  Q
     |||||||||||||||| | |||||  |  |||||||| ||||| ||| |||||||| | ||||||||||| ||| || ||||||  ||||||  || |     
T  12932956 atttccatcttctattgctccttcttcagctcttggtaaaagatgtggatccaaaatctttataagattatcaggaaatgaaattgtaacaaagttatgc 12932857  T
Q  205 agattttgaccat 217  Q
    |||||||||||||    
T  12932856 agattttgaccat 12932844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 17922829 - 17922914
Alignment:
Q  5 caatactcattctttcttttggtgattccactgaacaagcaagtccaatcctaaaaagtgaaactacgcacttctctacatttgga 90  Q
    ||||| |||||||||||||||||||||||| |||||||  |||||||||||||||||| ||||||| ||||| ||||||| |||||    
T  17922829 caatattcattctttcttttggtgattccaatgaacaaaaaagtccaatcctaaaaagggaaactaagcactcctctacagttgga 17922914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 31466571 - 31466650
Alignment:
Q  7 atactcattctttcttttggtgattccactgaacaagcaagtccaatcctaaaaagtgaaactacgcacttctctacatt 86  Q
    |||||||| ||||||||||||||||||| ||||||| ||||| |||| ||||||||||||| ||  || |||||||||||    
T  31466571 atactcatcctttcttttggtgattccattgaacaaccaagtgcaatactaaaaagtgaaattaaacatttctctacatt 31466650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 30364008 - 30363948
Alignment:
Q  7 atactcattctttcttttggtgattccactgaacaagcaagtccaatcctaaaaagtgaaa 67  Q
    ||||||||||||||||| |||||||||  |||||| |||||| |||| |  ||||||||||    
T  30364008 atactcattctttctttcggtgattccgttgaacatgcaagtgcaatacagaaaagtgaaa 30363948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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