View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20608_low_3 (Length: 634)
Name: NF20608_low_3
Description: NF20608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20608_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 12 - 615
Target Start/End: Complemental strand, 28370771 - 28370156
Alignment:
| Q |
12 |
agaagcaaaggtaacattaattatcaacgaaaaaagaggttagatcaacgaaattcaacaagaagcatagttgaaacttaatgtatgtgtgactttcgga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28370771 |
agaagcaaaggtaacattaattatcaacgaaaaaagaggttagatcaacgaaattcaacaagaagcatagttgaaacttaatgtatgtgtgactttcgga |
28370672 |
T |
|
| Q |
112 |
cacagtcaccgagtagaagaagaagaa---tcaaattgaaagggaatgtttggagtgaaaagaaaatcaactttagtgggtttggcttttctaatgttca |
208 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28370671 |
cacagtcaccgagtagaagaagaagaagaatcaaattgaaagggaatgtttggagtgaaaagaaaatcaactttagtgggtttggcttttctaatgttca |
28370572 |
T |
|
| Q |
209 |
tgggtattgctgtttatttcagactttgggctattgactacaacatttcaatcgatgattctgagctcttaaggtacgttcc---------------ttg |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
28370571 |
tgggtattgctgtttatttcagactttgggctattgactacaacatttcaatcgatgattctgagctcttaaggtacgttcctcttcttcccatcatttg |
28370472 |
T |
|
| Q |
294 |
atttgaaacacaaattgatttgaaacgaaattgtgatctttgagttcccatatctttatactgatttgaattcacactgctgagagaaatttttgttttg |
393 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||| |
|
|
| T |
28370471 |
atttgaaacacaaattgattcgaaacgaaattgtgatctttgagttcccatatctttatactgatttgaattcacactgctgaaataaagttttgttttg |
28370372 |
T |
|
| Q |
394 |
tgattgatgggatgcttcagtctgtatttcaattataattacaatgactgccttagtctatgaatgtaacactgacatttcagattgaatgcgtgtctcg |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
28370371 |
tgattgatgggatgcttcagtctgtatttcaattataattacaatgactgccttagtctatgaatgtaacactgacatttcagattgaatgcgtgtctgg |
28370272 |
T |
|
| Q |
494 |
tgtccaccactgcctttgtctgactctgatactgacatgatgccgaaaaatccagttacattcaaatcaatgttgtcaatcgtgtactatagtgccgcta |
593 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28370271 |
tgtccaccactgcctttg------tctcatactcacatgatgccgaaaaatctagttacattcaaattaatgttgtcaatcgtgtactatagtgccgcta |
28370178 |
T |
|
| Q |
594 |
ttgtgttagcggtcgcaaatag |
615 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
28370177 |
ttgtgttagctgtcgcaaatag |
28370156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University