View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20608_low_7 (Length: 479)
Name: NF20608_low_7
Description: NF20608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20608_low_7 |
 | |
|
| [»] scaffold0531 (3 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 403; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 17 - 471
Target Start/End: Complemental strand, 8032028 - 8031574
Alignment:
| Q |
17 |
caacttctactataagttgttgaggcaccacaatataaaggcctaacttttcaccaaacgcatgttggcctaattcatggtatctatcaaaacgttttcc |
116 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8032028 |
caacttctactataagttgttgaggaaccacaatataaaggcctaacttttcgccaaacgcatgttgacctaattcatggtatctatcaaaacgttttcc |
8031929 |
T |
|
| Q |
117 |
gggaatcatttcatgcatctcaaccatttgccacaatgtatacagagtgatggtccatgataagagaagtatagtcaaacctggacccctgagtaataga |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8031928 |
cggaatcatttcatgcatctcaaccatttgccacaatgtatacagagtgatggtccatgataagagaagtatagtcaaacctggacccctgagtaataga |
8031829 |
T |
|
| Q |
217 |
aatgttgattgattattaactttaaagcataaaagttataaatctatgttgtttcttattttatgttagagaattcttcatgccaagtgtaattagggtt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
8031828 |
aatgttgattgattattaactttaaagcataaaagttataaatctattttgtttcttattttatgttagagaatacttcatgacaagtgtaattagggtt |
8031729 |
T |
|
| Q |
317 |
tgaaatataccatccaagagctgccatggaataggggagaccaagaacaccagctccaaccatggcagtcacattgtgaaaagaagaataccaccatttt |
416 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
8031728 |
tgaaatataccatccaagatatgccatggaaaaggggagaccaagaacaccagctccaaccattgcagtgacattgtggaaagaagaataccaccatttt |
8031629 |
T |
|
| Q |
417 |
gcattcctttcagaactaactggaagccagtcttcaatttgtttttccctctctg |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8031628 |
gcattcctttcagaactaactggaagccagtcttcaatttgtttttccctctctg |
8031574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 272 - 464
Target Start/End: Complemental strand, 8041141 - 8040949
Alignment:
| Q |
272 |
ttattttatgttagagaattcttcatgccaagtgtaattagggtttgaaatataccatccaagagctgccatggaataggggagaccaagaacaccagct |
371 |
Q |
| |
|
||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8041141 |
ttattttattttagagaatatttcatggtgcgtgtaattagggtttgaaatataccatccaagagctgccatggaaaaggggagaccaagaacaccagct |
8041042 |
T |
|
| Q |
372 |
ccaaccatggcagtcacattgtgaaaagaagaataccaccattttgcattcctttcagaactaactggaagccagtcttcaatttgtttttcc |
464 |
Q |
| |
|
|||||||||||||| |||||||| |||| || ||||||||||||||||||||| ||||| || |||||| |||||| ||||||||||| |
|
|
| T |
8041041 |
ccaaccatggcagtgacattgtggaaagtcgagtaccaccattttgcattccttccagaattacttggaagttggtcttccttttgtttttcc |
8040949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 301 - 431
Target Start/End: Original strand, 7972929 - 7973059
Alignment:
| Q |
301 |
aagtgtaattagggtttgaaatataccatccaagagctgccatggaataggggagaccaagaacaccagctccaaccatggcagtcacattgtgaaaaga |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
7972929 |
aagtgtaattagggtttgaaatataccatccaagagctgccatggcaaaggggagaccaagaacaccagctccaaccatggcagtgacattgtggaaagt |
7973028 |
T |
|
| Q |
401 |
agaataccaccattttgcattcctttcagaa |
431 |
Q |
| |
|
|| ||||||||||||||||||||| ||||| |
|
|
| T |
7973029 |
cgagtaccaccattttgcattccttccagaa |
7973059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 30 - 211
Target Start/End: Complemental strand, 8041894 - 8041713
Alignment:
| Q |
30 |
aagttgttgaggcaccacaatataaaggcctaacttttcaccaaacgcatgttggcctaattcatggtatctatcaaaacgttttccgggaatcatttca |
129 |
Q |
| |
|
|||||||||||||| |||||| | | ||||||||||||||||| |||||||| |||||||||| ||| |||||| ||||||||| |||| ||| ||| |
|
|
| T |
8041894 |
aagttgttgaggcatcacaatccacaaccctaacttttcaccaaaagcatgttgccctaattcattatatgtatcaagacgttttcctggaaccatctca |
8041795 |
T |
|
| Q |
130 |
tgcatctcaaccatttgccacaatgtatacagagtgatggtccatgataagagaagtatagtcaaacctggacccctgagta |
211 |
Q |
| |
|
||||||||||||||||||||||| || ||||| |||||| ||||||| | || |||||||| |||||||||||||||||||| |
|
|
| T |
8041794 |
tgcatctcaaccatttgccacaaggtgtacagtgtgatgatccatgaaaggacaagtatagccaaacctggacccctgagta |
8041713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 21 - 149
Target Start/End: Original strand, 7979353 - 7979481
Alignment:
| Q |
21 |
ttctactataagttgttgaggcaccacaatataaaggcctaacttttcaccaaacgcatgttggcctaattcatggtatctatcaaaacgttttccggga |
120 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||| ||||| |||| ||||| |||||||| ||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
7979353 |
ttctaccacaagttgttgaggcaccacaatataaagacctaattttttcccaaaagcatgttgacctaattcatggtatctatcaaagcgttttcccgga |
7979452 |
T |
|
| Q |
121 |
atcatttcatgcatctcaaccatttgcca |
149 |
Q |
| |
|
| ||||||||||||||||||||||||||| |
|
|
| T |
7979453 |
accatttcatgcatctcaaccatttgcca |
7979481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 30 - 208
Target Start/End: Original strand, 7971794 - 7971972
Alignment:
| Q |
30 |
aagttgttgaggcaccacaatataaaggcctaacttttcaccaaacgcatgttggcctaattcatggtatctatcaaaacgttttccgggaatcatttca |
129 |
Q |
| |
|
|||||||||||||| |||||| | | ||||||||||||||||| |||||||| |||||||||| ||| |||||| ||||||||| |||| ||| ||| |
|
|
| T |
7971794 |
aagttgttgaggcatcacaatccacaaccctaacttttcaccaaaagcatgttgccctaattcattatatgtatcaagacgttttcctggaaccatctca |
7971893 |
T |
|
| Q |
130 |
tgcatctcaaccatttgccacaatgtatacagagtgatggtccatgataagagaagtatagtcaaacctggacccctga |
208 |
Q |
| |
|
||||||||||||||||||||||| || ||||| |||||| ||||||| | | |||||||| ||| ||||||||||||| |
|
|
| T |
7971894 |
tgcatctcaaccatttgccacaaggtgtacagtgtgatgatccatgaaagaacaagtatagccaatcctggacccctga |
7971972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 316 - 455
Target Start/End: Original strand, 7979989 - 7980128
Alignment:
| Q |
316 |
ttgaaatataccatccaagagctgccatggaataggggagaccaagaacaccagctccaaccatggcagtcacattgtgaaaagaagaataccaccattt |
415 |
Q |
| |
|
||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||| |
|
|
| T |
7979989 |
ttgaaatataccatccaagttgtgccatggcatgagggagaccaagaacaccagctccaaccatggcagtgacattgtgaaaagctgagtaccaccattt |
7980088 |
T |
|
| Q |
416 |
tgcattcctttcagaactaactggaagccagtcttcaatt |
455 |
Q |
| |
|
||||||||||| ||| ||| ||||||||| || |||||| |
|
|
| T |
7980089 |
tgcattccttttagatgtaattggaagccactcatcaatt |
7980128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 156; Significance: 1e-82; HSPs: 3)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 3304 - 3511
Alignment:
| Q |
17 |
caacttctactataagttgttgaggcaccacaatataaaggcctaacttttcaccaaacgcatgttggcctaattcatggtatctatcaaaacgttttcc |
116 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || | ||||||||| ||||||||||||||||| |
|
|
| T |
3304 |
caacttctactacaagttgttgaggcaccacaatataaaggcctaacttttcgccaaacgcgtgttgtcccagttcatggtacctatcaaaacgttttcc |
3403 |
T |
|
| Q |
117 |
gggaatcatttcatgcatctcaaccatttgccacaatgtatacagagtgatggtccatgataagagaagtatagtcaaacctggacccctgagtaataga |
216 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
3404 |
aggaaccatttcatgcatctcaaccatttgccacaatgtatacagagtgatgatccatgataagataagtatagtcaaacctggacccctgagtagtaga |
3503 |
T |
|
| Q |
217 |
aatgttga |
224 |
Q |
| |
|
||| |||| |
|
|
| T |
3504 |
aatattga |
3511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 267 - 467
Target Start/End: Original strand, 3889 - 4088
Alignment:
| Q |
267 |
gtttcttattttatgttagagaattcttcatgccaagtgtaattagggtttgaaatataccatccaagagctgccatggaataggggagaccaagaacac |
366 |
Q |
| |
|
|||||||||||||| ||||||| | |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3889 |
gtttcttattttattttagagactatttcatggtaagtgtaattagggtttgaa-tataccatccaagagctgccatggaataggggaggccaagaacac |
3987 |
T |
|
| Q |
367 |
cagctccaaccatggcagtcacattgtgaaaagaagaataccaccattttgcattcctttcagaactaactggaagccagtcttcaatttgtttttccct |
466 |
Q |
| |
|
||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||| ||||| |
|
|
| T |
3988 |
cagctccaaccattgcagtgacattgtggaaagaagaataccaccattttgcattcctttgggagctaattggaagccagtcttcaatttgtttctccct |
4087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 5434 - 5478
Alignment:
| Q |
426 |
tcagaactaactggaagccagtcttcaatttgtttttccctctctg |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5434 |
tcagaactaactggaagccagtcttcaatttg-ttttccctctctg |
5478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 301 - 430
Target Start/End: Original strand, 41382955 - 41383084
Alignment:
| Q |
301 |
aagtgtaattagggtttgaaatataccatccaagagctgccatggaataggggagaccaagaacaccagctccaaccatggcagtcacattgtgaaaaga |
400 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
41382955 |
aagtgtaatttgggtttaaaatataccatccaagggctgccatggaaaaggggagaccaagaacaccagctccaaccatggcagtgacattgtggaaagt |
41383054 |
T |
|
| Q |
401 |
agaataccaccattttgcattcctttcaga |
430 |
Q |
| |
|
||| ||||||||||||||||| |||||||| |
|
|
| T |
41383055 |
agagtaccaccattttgcatttctttcaga |
41383084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 41382180 - 41382371
Alignment:
| Q |
17 |
caacttctactataagttgttgaggcaccacaatataaaggcctaacttttcaccaaacgcatgttggcctaattcatggtatctatcaaaacgttttcc |
116 |
Q |
| |
|
|||||| ||| | |||||||||||||| |||||| | | ||||||||||||||||||||||||||||| ||||||| ||| |||||| ||||||||| |
|
|
| T |
41382180 |
caacttgtaccacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaacgcatgttggcccaattcattatatgtatcaagacgttttcc |
41382279 |
T |
|
| Q |
117 |
gggaatcatttcatgcatctcaaccatttgccacaatgtatacagagtgatggtccatgataagagaagtatagtcaaacctggacccctga |
208 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||| || || ||||||||| ||||||| | || ||||||| |||||||||||||||||| |
|
|
| T |
41382280 |
cggaaccatctcatgcatctcaaccatttgccacagggtgtagagagtgatgatccatgaaaggataagtataatcaaacctggacccctga |
41382371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 322 - 425
Target Start/End: Complemental strand, 43851887 - 43851784
Alignment:
| Q |
322 |
tataccatccaagagctgccatggaataggggagac-caagaacaccagctccaaccatggcagtcacattgtgaaaagaagaataccaccattttgcat |
420 |
Q |
| |
|
|||||||||||||| |||||||| | | || |||| ||||| |||||||||||||||||||||| ||||||||||||| | |||||||||||||||| |
|
|
| T |
43851887 |
tataccatccaagacttgccatggcagatggaagactcaaga-caccagctccaaccatggcagtaacattgtgaaaagctgcgtaccaccattttgcat |
43851789 |
T |
|
| Q |
421 |
tcctt |
425 |
Q |
| |
|
||||| |
|
|
| T |
43851788 |
tcctt |
43851784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 43853219 - 43853161
Alignment:
| Q |
91 |
tcatggtatctatcaaaacgttttccgggaatcatttcatgcatctcaaccatttgcca |
149 |
Q |
| |
|
|||||||| |||||||| |||||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
43853219 |
tcatggtacctatcaaaccgttttcctggaaccatttcatgcatttcaaccatttgcca |
43853161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 319 - 468
Target Start/End: Original strand, 14199113 - 14199262
Alignment:
| Q |
319 |
aaatataccatccaagagctgccatggaataggggagaccaagaacaccagctccaaccatggcagtcacattgtgaaaagaagaataccaccattttgc |
418 |
Q |
| |
|
|||||||||||||||| ||||||| ||| ||||||| ||||||||||||||||||||||||||| |||||||| || | |||||||||||||||||| |
|
|
| T |
14199113 |
aaatataccatccaagttgagccatggcataagggagactaagaacaccagctccaaccatggcagtaacattgtggaatgcagaataccaccattttgc |
14199212 |
T |
|
| Q |
419 |
attcctttcagaactaactggaagccagtcttcaatttgtttttccctct |
468 |
Q |
| |
|
||| ||| ||||||| |||||||||||| |||||| ||||| ||||| |
|
|
| T |
14199213 |
atttcttgacgaactaattggaagccagtcatcaattgctttttgcctct |
14199262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 14198748 - 14198878
Alignment:
| Q |
19 |
acttctactataagttgttgaggcaccacaatataaaggcctaacttttcaccaaacgcatgttggcctaattcatggtatctatcaaaacgttttccgg |
118 |
Q |
| |
|
||||| || ||||||||||| ||||| |||||||| || || |||||||||||||| |||| ||| || | |||||| |||||||| |||||||| |||| |
|
|
| T |
14198748 |
acttcaacaataagttgttgtggcacaacaatatacagacccaacttttcaccaaaagcatattgacccagttcatgatatctatcgaaacgtttcccgg |
14198847 |
T |
|
| Q |
119 |
gaatcatttcatgcatctcaaccatttgcca |
149 |
Q |
| |
|
| | ||||||||||||||||||||||||||| |
|
|
| T |
14198848 |
gtaccatttcatgcatctcaaccatttgcca |
14198878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 363 - 418
Target Start/End: Original strand, 361787 - 361842
Alignment:
| Q |
363 |
acaccagctccaaccatggcagtcacattgtgaaaagaagaataccaccattttgc |
418 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
361787 |
acaccagcaccaaccatagcagtcacattatgaaaagttgaataccaccattttgc |
361842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 38827416 - 38827453
Alignment:
| Q |
112 |
tttccgggaatcatttcatgcatctcaaccatttgcca |
149 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38827416 |
tttccgggaactatttcatgcatctcaaccatttgcca |
38827453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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