View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20609_high_1 (Length: 745)
Name: NF20609_high_1
Description: NF20609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20609_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 11 - 375
Target Start/End: Complemental strand, 207671 - 207312
Alignment:
| Q |
11 |
cacagacagtaataacaaaataagtcaaattgaaaggtaacatccacggatccaccaactacaatgcacacagtaatattctgtccgagtaattgactta |
110 |
Q |
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| T |
207671 |
cacagacagtaataacaaaataagtcaaattgaaaggtaacatccac--------caactacaatgcacacagtaatattctgtccgagtaattgactta |
207580 |
T |
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| Q |
111 |
ttcctaatattttatttgtgtacaagtcataaactcgtactctttcgtataagaatgcattttctttcaaacattttgccgtgttggatttcaaaactca |
210 |
Q |
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| T |
207579 |
ttcctaatattttatttgtgtacaagtcataaactcgtactctttcgtataagaatgcattttctttcaaacattttgccgtgttggatttcaaaactca |
207480 |
T |
|
| Q |
211 |
aatttagttgctttttgggttgttcagacttaaaaattcaaagtagtgaaagaataataata---ataaccttccaaccccgccaccagctacaagttaa |
307 |
Q |
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| T |
207479 |
aatttagttgctttttgggttgttcagacttaaaaattcaaagtagtgaaagaataataataataataaccttccaaccccgccaccagctacaagttaa |
207380 |
T |
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| Q |
308 |
gtcaataaagaacaaaacaagcctttttccaattaatcttcaattcagtcattctccatacacattgc |
375 |
Q |
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| T |
207379 |
gtcaataaagaacaaaacaagcctttttccaattaatcttcaattcagtcattctccatacacattgc |
207312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 390 - 729
Target Start/End: Complemental strand, 207285 - 206946
Alignment:
| Q |
390 |
acattcctcatcattcatgctccaaacgacaccattaacccactaatatatattgtgtacggtttggtacatcttggaagttagatatatacaaaatgaa |
489 |
Q |
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| T |
207285 |
acattcctcatcattcatgctccaaacgacaccattaacccactaatatatattgtgtacggtttggtacatcttggaagttagatatatacaaaatgaa |
207186 |
T |
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| Q |
490 |
tctgcagggtattactcttaatattatcaatgcccnnnnnnngatgatattttcctttctcttgctctcacactccatacaagttgaggggacaagacct |
589 |
Q |
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| T |
207185 |
gctgcagggtattactcttaatattatcaatgccctttttttgatgatattttcctttctcttgctctcgcactccatacaagttgaggggacaagacct |
207086 |
T |
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| Q |
590 |
ctcaaagatcaatctgctccttccgtcataagtttaataatcaaccaggcttattctggaccaagccacaaaggacgtggtcactgaactgatgctgcat |
689 |
Q |
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| T |
207085 |
ctcaaagatcaatctgctccttccgtcataagtttaataatcaaccaggcttattctggaccaagccacaaaggacgtggtcactgaactgatgctgcat |
206986 |
T |
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| Q |
690 |
gtacgccaaagaaacttaactaattttatatgtactttct |
729 |
Q |
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| T |
206985 |
gtacgccaaagaaacttaactaattttatatgttctttct |
206946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 584 - 676
Target Start/End: Original strand, 48517863 - 48517955
Alignment:
| Q |
584 |
agacctctcaaagatcaatctgctccttccgtcataagtttaataatcaaccaggcttattctggaccaagccacaaaggacgtggtcactga |
676 |
Q |
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|||||||| |||||||||||| |||| || || ||||||||||||||||||||||||||||||||||||| | || |||||| ||||||||| |
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| T |
48517863 |
agacctctgaaagatcaatctcctccatcattcttaagtttaataatcaaccaggcttattctggaccaagtcgcagaggacgcggtcactga |
48517955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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