View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20609_high_10 (Length: 227)

Name: NF20609_high_10
Description: NF20609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20609_high_10
NF20609_high_10
[»] chr6 (3 HSPs)
chr6 (1-189)||(14248136-14248324)
chr6 (1-227)||(14316635-14316859)
chr6 (8-182)||(14253953-14254124)
[»] scaffold1176 (2 HSPs)
scaffold1176 (8-185)||(277-454)
scaffold1176 (2-89)||(1391-1478)
[»] scaffold1652 (2 HSPs)
scaffold1652 (8-181)||(496-669)
scaffold1652 (44-83)||(277-316)
[»] scaffold0902 (2 HSPs)
scaffold0902 (2-185)||(3196-3379)
scaffold0902 (28-81)||(3483-3536)
[»] scaffold1801 (1 HSPs)
scaffold1801 (3-185)||(159-350)
[»] chr4 (8 HSPs)
chr4 (32-170)||(37244886-37245021)
chr4 (102-181)||(37232687-37232766)
chr4 (98-180)||(37257059-37257141)
chr4 (103-167)||(37252947-37253011)
chr4 (46-97)||(37241876-37241927)
chr4 (5-83)||(37241923-37242001)
chr4 (43-84)||(37245128-37245169)
chr4 (32-84)||(37242111-37242163)


Alignment Details
Target: chr6 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 14248324 - 14248136
Alignment:
Q  1 tcatctcctcctcatgctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatctaaagcaccatcaacgtccacaaacgccg 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14248324 tcatctcctcctcaagctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatctaaagcaccatcaacgtccacaaacgccg 14248225  T
Q  101 ccgccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgctttgatgatgtaaagagttaggcttagt 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  14248224 ccgccgctttgaacagatttacagttgccggatctactgctgtcgtggtttttgttgctgctttgatgatgtagagagttaggcttagt 14248136  T

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Target: chr6; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 14316859 - 14316635
Alignment:
Q  1 tcatctcctcctcatgctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatctaaagcaccatcaacgtccacaaacgccg 100  Q
    |||||||||||||| |||| ||||||||||||||| || || ||||||||  |||||||||||||||| ||||||||||||||||||||||| |||| ||    
T  14316859 tcatctcctcctcaagcttcccccgcagccactccggccatcactccatcatcgatctctacccctccttctaaagcaccatcaacgtccacgaacgacg 14316760  T
Q  101 ccgccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgctttgatgatgtaaagagttaggcttag-tcnnnnnnngt 199  Q
    ||||   |||||||||||||||  ||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||| |        ||    
T  14316759 ccgc---tttgaacagatttacccttgccggatctgctgctgtcgtggttttcgctgctgctttgatgatgtagagagttaggcttagttttttttttgt 14316663  T
Q  200 atagacgctgagttttgtttttattcaa 227  Q
    ||||||||||||||||||||||| ||||    
T  14316662 atagacgctgagttttgtttttaatcaa 14316635  T

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Target: chr6; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 14254124 - 14253953
Alignment:
Q  8 ctcctcatgctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatctaaagcaccatcaacgtccacaaacgccgccgccgc 107  Q
    ||||||| ||||  || ||||| |||||||| |||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||| ||||||       
T  14254124 ctcctcaagcttcacctgcagctactcctgctattactccatcgtcgatctctatccctccatctaaagtaccatcaacgtccacaaacgacgccgc--- 14254028  T
Q  108 tttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgctttgatgatgtaaagagttag 182  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||| ||||||||    
T  14254027 tttgaacagatttacagttgctggatctgctgctgtcgtggttttcgctgctgctttgatgatgtagagagttag 14253953  T

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Target: scaffold1176 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 8 - 185
Target Start/End: Original strand, 277 - 454
Alignment:
Q  8 ctcctcatgctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatctaaagcaccatcaacgtccacaaacgccgccgccgc 107  Q
    ||||||| |||| |||||||||||| ||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  277 ctcctcaagcttcccccgcagccacccctgctattactccatcgtccatctctacccctccatctaaagcaccatcaacgtccacaaacgacgccgccgc 376  T
Q  108 tttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgctttgatgatgtaaagagttaggct 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  377 tttgaacagatttacagttgccggatctactgctgtcgtggttttcattgctgctttgatgatgtagagagttaggct 454  T

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Target: scaffold1176; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 1391 - 1478
Alignment:
Q  2 catctcctcctcatgctttccccgcagccactcctgcaattactccatcggcgatctctacccc-tccatctaaagcaccatcaacgtc 89  Q
    |||||||||||||||||| ||||||| |  |||| || | ||||| |||| | ||||||||||| |||||||||||||| |||||||||    
T  1391 catctcctcctcatgcttcccccgcaacagctccggctaatactc-atcgtcaatctctaccccctccatctaaagcacaatcaacgtc 1478  T

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Target: scaffold1652 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 496 - 669
Alignment:
Q  8 ctcctcatgctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatctaaagcaccatcaacgtccacaaacgccgccgccgc 107  Q
    ||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| || |    
T  496 ctcctcaagcttcccccgcagccactcctgctattactccatcggcgatctctaccccaccatctaaagcaccatcaacgtccacaaacgctgccaccac 595  T
Q  108 tttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgctttgatgatgtaaagagtta 181  Q
    |||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||| |||||||    
T  596 tttgaacagatttacagttgccggatctgctgctgtcgtggttttcactgctgctttgatgatgtagagagtta 669  T

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Target: scaffold1652; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 277 - 316
Alignment:
Q  44 ctccatcggcgatctctacccctccatctaaagcaccatc 83  Q
    |||||||| |||||||||||||||||||| ||||||||||    
T  277 ctccatcgtcgatctctacccctccatctcaagcaccatc 316  T

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Target: scaffold0902 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 2 - 185
Target Start/End: Complemental strand, 3379 - 3196
Alignment:
Q  2 catctcctcctcatgctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatctaaagcaccatcaacgtccacaaacgccgc 101  Q
    |||||||||||||||||| ||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |     
T  3379 catctcctcctcatgcttccccagcagccgctcctgccattactccatcggcgatctctacccctccatctaaagcaccatcaacattcacaaacgctgg 3280  T
Q  102 cgccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgctttgatgatgtaaagagttaggct 185  Q
    | |||||||||||||||||||||||||||||||| |||||||||||||||||   ||||||||||||||||| |||||||||||    
T  3279 caccgctttgaacagatttacagttgccggatctgctgctgtcgtggttttcacggctgctttgatgatgtagagagttaggct 3196  T

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Target: scaffold0902; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 3536 - 3483
Alignment:
Q  28 gccactcctgcaattactccatcggcgatctctacccctccatctaaagcacca 81  Q
    |||||||||||  | ||||||||| |||||||||| ||||||||| ||||||||    
T  3536 gccactcctgctgtgactccatcgtcgatctctactcctccatctcaagcacca 3483  T

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Target: scaffold1801 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 185
Target Start/End: Original strand, 159 - 350
Alignment:
Q  3 atctcctcctcatgctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatctaaagcaccatcaacgtc---------caca 93  Q
    |||||||||||||||||  || |||||  ||||||| |||||||||||| |||||||||||||||||||||||||| ||||||| ||         ||||    
T  159 atctcctcctcatgcttcgccagcagctgctcctgccattactccatcgtcgatctctacccctccatctaaagcatcatcaacatcacagacatccaca 258  T
Q  94 aacgccgccgccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgctttgatgatgtaaagagttaggct 185  Q
    ||||| || ||||||||||||||||||||||||||||||||| ||||||||||  ||||   |||||||||||||||||||||| |||||||    
T  259 aacgctgctgccgctttgaacagatttacagttgccggatctgctgctgtcgtccttttaactgctgctttgatgatgtaaagatttaggct 350  T

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Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 32 - 170
Target Start/End: Complemental strand, 37245021 - 37244886
Alignment:
Q  32 ctcctgcaattactccatcggcgatctctacccctccatctaaagcaccatcaacgtccacaaacgccgccgccgctttgaacagatttacagttgccgg 131  Q
    ||||||| ||||||||| || | ||||||||||||||||||||| |||||||||| ||||||||   || ||||||||| |||||||| || ||||||||    
T  37245021 ctcctgctattactccaacgtctatctctacccctccatctaaatcaccatcaacatccacaaa---cggcgccgctttcaacagattcactgttgccgg 37244925  T
Q  132 atctactgctgtcgtggttttcgttgctgctttgatgat 170  Q
    |||| ||||||| |||||||||| ||||| |||||||||    
T  37244924 atctgctgctgttgtggttttcgctgctgttttgatgat 37244886  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 37232766 - 37232687
Alignment:
Q  102 cgccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgctttgatgatgtaaagagtta 181  Q
    |||||||||||| ||||| || |||||||||||| ||||||| ||| |||||| ||| |||||||||||||| |||||||    
T  37232766 cgccgctttgaatagattcaccgttgccggatctgctgctgttgtgattttcgctgccgctttgatgatgtagagagtta 37232687  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 37257141 - 37257059
Alignment:
Q  98 ccgccgccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgctttgatgatgtaaagagtt 180  Q
    ||||||||||||| |||||||| || ||||| |||||| |||||||  |||||||||  ||||||||||||||||| ||||||    
T  37257141 ccgccgccgcttttaacagattcaccgttgctggatctgctgctgttatggttttcgccgctgctttgatgatgtagagagtt 37257059  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 37253011 - 37252947
Alignment:
Q  103 gccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgctttgat 167  Q
    |||||||||||||||||||| |||||||||||| ||||||| ||||||||||  || ||||||||    
T  37253011 gccgctttgaacagatttaccgttgccggatctgctgctgtagtggttttcgccgccgctttgat 37252947  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 37241927 - 37241876
Alignment:
Q  46 ccatcggcgatctctacccctccatctaaagcaccatcaacgtccacaaacg 97  Q
    |||||| |||||||||| |||||| ||||||||||||||||| |||||||||    
T  37241927 ccatcgtcgatctctactcctccaactaaagcaccatcaacgcccacaaacg 37241876  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 37242001 - 37241923
Alignment:
Q  5 ctcctcctcatgctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatctaaagcaccatc 83  Q
    |||||||||| || | ||| || ||| ||||||| |||||||||||| | |||||||| |||||| |||||||||||||    
T  37242001 ctcctcctcacgcctcccctgctgccgctcctgctattactccatcgtcaatctctactcctccaactaaagcaccatc 37241923  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 37245169 - 37245128
Alignment:
Q  43 actccatcggcgatctctacccctccatctaaagcaccatca 84  Q
    ||||||||| |||||||||| ||||||||| |||||||||||    
T  37245169 actccatcgtcgatctctactcctccatctcaagcaccatca 37245128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 37242163 - 37242111
Alignment:
Q  32 ctcctgcaattactccatcggcgatctctacccctccatctaaagcaccatca 84  Q
    |||||||| ||||||||| | ||||||| || ||||||||| |||||||||||    
T  37242163 ctcctgcagttactccattgtcgatctcaactcctccatctcaagcaccatca 37242111  T

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