View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20609_low_2 (Length: 623)
Name: NF20609_low_2
Description: NF20609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20609_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 17 - 456
Target Start/End: Original strand, 3525665 - 3526102
Alignment:
| Q |
17 |
cacattggagcctgacacttataccgagcagcaacaggctttgttagcggctcatcctgaagtgcacaaattcttatcacaaactagagacattgttaaa |
116 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
3525665 |
cacattggagcctgacacttatatcgagcatcaataggctttgttagcggctcatcctgaagtgcacaaattcttatcacaaactacagacactgttaaa |
3525764 |
T |
|
| Q |
117 |
aaggtcaagagagggagacctagaaagcccaagagtcccaaaacattttctaacaccaaatcaaaacacaaaatcgctacagatcttactgagactggct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
3525765 |
aaggtcaagagagggagacctagaaagcccaagagttccaaagcactttctaacaccaaatcaaaacacaa--tcgctacagatcttactgagattggct |
3525862 |
T |
|
| Q |
217 |
ttgatatagtgaatacaagatccaaacatggtgttatcaaaagcaatcctagatatgatgattagaggattatgaaattttgatactcatctattttgca |
316 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
3525863 |
ctgatactgtgaatacaagatccaaacatggtgttatcaaaagcaatcctagatatggtgattagaggatcaggaaattttgatactcatctattttgca |
3525962 |
T |
|
| Q |
317 |
taacatatgctatatttgattagatttctttaggggcatgtgcagctctatgcttttttggcaggctacactttgttttgttgctataggatagccttag |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| | |
|
|
| T |
3525963 |
taacatatgctatatttgattagatttctttaggggcatgtgcagctctatgctttcttggcaggttacactttgttttgttgctataggataaccttgg |
3526062 |
T |
|
| Q |
417 |
cttcctttctctcttttgtaaacaggttcaagccttaatc |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3526063 |
cttcctttctctcttttgtaaacaggttcaggccttaatc |
3526102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 456
Target Start/End: Original strand, 52315847 - 52316274
Alignment:
| Q |
17 |
cacattggagcctgacacttataccgagcagcaacaggctttgttagcggctcatcctgaagtgcacaaattcttatcacaaactagagacattgttaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||| |
|
|
| T |
52315847 |
cacattggagcctgacacttataccgagcagcaacaagctttgttagcggctcatcctgaagtgcacaaattcttatcacaacctatagacactgttaaa |
52315946 |
T |
|
| Q |
117 |
aaggtcaagagagggagacctagaaagcccaagagtcccaaaacattttctaacaccaaatcaaaacacaaaatcgctacagatcttactgagactggct |
216 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
52315947 |
aagggcaagagagggagacctagaaagcccaagagtcccaaagcactttctggcaccaaatcaaaacacaaaaccgctacagatcttattgagactggct |
52316046 |
T |
|
| Q |
217 |
ttgatatagtgaatacaagatccaaacatggtgttatcaaaagcaatcctagatatgatgattagaggattatgaaattttgatactcatctattttgca |
316 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||| |
|
|
| T |
52316047 |
ctgatactgtgaatacaagatccaaacatggtgttatcaaaagcaatcctagatatggtgattagaggattaggaaattttga-------------tgca |
52316133 |
T |
|
| Q |
317 |
taacatatgctatatttgattagatttctttaggggcatgtgcagctctatgcttttttggcaggctacactttgttttgttgctataggatagcc-tta |
415 |
Q |
| |
|
||||| ||||| ||| |||||| ||||||||||||||||||||||| ||||||||| |||||| | |||||||||||||||||||||||||||||| || |
|
|
| T |
52316134 |
taacaaatgctttatctgattatatttctttaggggcatgtgcagccctatgctttcttggcaagttacactttgttttgttgctataggatagcctttg |
52316233 |
T |
|
| Q |
416 |
gcttcctttctctcttttgtaaacaggttcaagccttaatc |
456 |
Q |
| |
|
| ||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
52316234 |
gtttcgtttctctcttttgtaaacaggttcatgccttaatc |
52316274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 21 - 456
Target Start/End: Original strand, 43699139 - 43699576
Alignment:
| Q |
21 |
ttggagcctgacacttataccgagcagcaacaggctttgttagcggctcatcctgaagtgcacaaattcttatcacaaactagagacattgttaaaaagg |
120 |
Q |
| |
|
||||||| |||||||| ||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||| | || || ||||||| |
|
|
| T |
43699139 |
ttggagcttgacacttttactgagcagcaacaggctctgttagaggctcatcctgaagtgcacaaattcttatcacacactactggcactgctaaaaaga |
43699238 |
T |
|
| Q |
121 |
tcaagagagggagacctagaaagcccaagagtcccaaaacattttctaacaccaaatcaaaacacaaaatcgctacagatcttactgagactggctttga |
220 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||| | ||| |||||||||||||||||||| | |||||||||||| |||||| |||| ||| |
|
|
| T |
43699239 |
gcaagagagtgagacctagaaagcccaagagtcccataacactatctcgcaccaaatcaaaacacaaaacctctacagatcttattgagaccggctctga |
43699338 |
T |
|
| Q |
221 |
tatagtgaatacaagatccaaacatggtgttatcaaaagcaatcctagatatgatgattagaggattatgaaattttgatactcatc-tattttgcataa |
319 |
Q |
| |
|
|| |||| |||||||| ||||||||||||||| ||||||||||| | ||||| |||||||||||||| |||||||||||| ||||| | ||||| | | |
|
|
| T |
43699339 |
tactgtgagtacaagattcaaacatggtgttattaaaagcaatcccaaatatggtgattagaggattaggaaattttgatattcatctttttttgtttta |
43699438 |
T |
|
| Q |
320 |
catatgctatatttgattagatttctttaggggcatgtgcagctctatgcttttttggcaggctacactttgttttgttgctataggatagcc-ttagct |
418 |
Q |
| |
|
|| ||||||||| | |||||| |||||||||| |||||||||| |||||||| |||||| ||||||||| |||||||||||||||||||||| || ||| |
|
|
| T |
43699439 |
cagatgctatatcttattagaattctttagggacatgtgcagccatatgctttcttggcaagctacacttagttttgttgctataggatagcctttggct |
43699538 |
T |
|
| Q |
419 |
tcctttctctcttttgtaaacaggttcaagccttaatc |
456 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
43699539 |
tccttttcctcttttgtaaacaggttcaggccttaatc |
43699576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 71 - 456
Target Start/End: Original strand, 13128953 - 13129339
Alignment:
| Q |
71 |
tcctgaagtgcacaaattcttatcacaaactagagacattgttaaaaaggtcaagagagggagacctagaaagcccaagagtcccaaaacattttctaac |
170 |
Q |
| |
|
|||||||||| |||||| |||||||||||||| ||| | ||||||||| | ||||||||||||||||| |||| ||||||||| |||| | ||| | | |
|
|
| T |
13128953 |
tcctgaagtgaacaaatacttatcacaaactacagaaactgttaaaaaaggcaagagagggagacctaaaaagtccaagagtctcaaatctctttttggc |
13129052 |
T |
|
| Q |
171 |
accaaatcaaaacacaaaatcgctacagatcttactgagactggctttgatatagtgaatacaagatccaaacatggtgttatcaaaagcaatcctagat |
270 |
Q |
| |
|
||||| ||||||||||||| | |||||||||||| ||||||||||| | ||| |||||||||| ||||||||||||||| ||||||| |||||| | || |
|
|
| T |
13129053 |
accaactcaaaacacaaaacctctacagatcttattgagactggctctaatactgtgaatacaatatccaaacatggtgtcatcaaaatcaatcccaaat |
13129152 |
T |
|
| Q |
271 |
atgatgattagaggattatgaaattttgatactcatctattttgcataacatatgctatatttgattagatttctttaggggcatgtgcagctctatgct |
370 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||| |||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
13129153 |
atggtgattagaggattaggaaattttgatactcatttattttgcataacagatgctatatctgattagaattctttaggggcatgtgcagccctatgct |
13129252 |
T |
|
| Q |
371 |
tttttggcaggctacactttgttttgttgctataggatagcc-ttagcttcctttctctcttttgtaaacaggttcaagccttaatc |
456 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
13129253 |
ttcttggcaggctacactttgttttgttgctatagggtagcctttggcttcctttcttacttttgtaaacaggttcaggccttaatc |
13129339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 82 - 458
Target Start/End: Original strand, 27491659 - 27492036
Alignment:
| Q |
82 |
acaaattcttatcacaaactagagacattgttaaaaaggtcaagagagggagacctagaaagcccaagagtcccaaaacattttctaacaccaaatcaaa |
181 |
Q |
| |
|
|||||| |||||||||||||| ||| | |||||||||| |||||||||||||||||| ||||||||||||||||| | ||||| |||||||||||| |
|
|
| T |
27491659 |
acaaatgcttatcacaaactacagaaacggttaaaaagggcaagagagggagacctaggaagcccaagagtcccaacgctctttctggcaccaaatcaaa |
27491758 |
T |
|
| Q |
182 |
acacaaaatcgctacagatcttactgagactggctttgatatagtgaatacaagatccaaacatggtgttatcaaaagcaatcctagatatgatgattag |
281 |
Q |
| |
|
|||||||||| |||||||||||||| |||||| || ||||| ||||||||||||||||||| |||||||||||||||||| || | ||||| ||||||| |
|
|
| T |
27491759 |
acacaaaatctctacagatcttactaagactgactctgatactgtgaatacaagatccaaacttggtgttatcaaaagcaaccccaaatatggtgattag |
27491858 |
T |
|
| Q |
282 |
aggattatgaaattttgatactcatctattttgcataacatatgctatatttgattagatttctttaggggcatgtgcagctctatgcttttttggcagg |
381 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| | |||||||||| ||||||||| || | ||| |
|
|
| T |
27491859 |
aggattagaaaattttgatactcatctattttgcataacagatgctatatctgattagacttctttaaagacatgtgcagccctatgctttcttagtagg |
27491958 |
T |
|
| Q |
382 |
ctacactttgttttgttgctataggatagcc-ttagcttcctttctctcttttgtaaacaggttcaagccttaatcat |
458 |
Q |
| |
|
|||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
27491959 |
ctacactttgctttgttgctataggatagcctttggcttcctttctctcttttgtaaatagattcaagccttaatcat |
27492036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 71 - 458
Target Start/End: Complemental strand, 34106714 - 34106322
Alignment:
| Q |
71 |
tcctgaagtgcacaaattcttatcacaaactagagacattgttaaaaaggtc----aagagagggagacctagaaagcccaagagtcccaaaacattttc |
166 |
Q |
| |
|
|||||||||| |||| | ||| |||||||||| | | | ||||||||||| | |||||| |||||||||||||||||||||||||||| || |||| |
|
|
| T |
34106714 |
tcctgaagtgaacaactacttttcacaaactacataaactgttaaaaagggcgagagagagagagagacctagaaagcccaagagtcccaaagcactttc |
34106615 |
T |
|
| Q |
167 |
taacaccaaatcaaaacacaaaatcgctacagatcttactgagactggctttgatatagtgaatacaagatccaaacatggtgttatcaaaagcaatcct |
266 |
Q |
| |
|
| |||||| ||||||||||||| | ||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
34106614 |
tggcaccaactcaaaacacaaaacctctaaagatcttattgagactggctctgatactgtgaatacaagatccaaacatggtgtcatcaaaatcaatccc |
34106515 |
T |
|
| Q |
267 |
agatatgatgattagaggattatgaaattttgatactcatctattttgcataacatatgctatatttgattagatttctttaggggcatgtgcagctcta |
366 |
Q |
| |
|
| ||||| ||||||||||||||||| |||| ||||||||||||||||||||||| ||| ||||| |||||||| ||||||| ||||||||||| | ||| |
|
|
| T |
34106514 |
aaatatggggattagaggattatgaattttttatactcatctattttgcataacagatgttatatctgattagaattctttaagggcatgtgcaacccta |
34106415 |
T |
|
| Q |
367 |
tgcttttttggcaggctacactttgttttgttgctataggatagcc-ttagcttcctttctctcttttgtaaacaggttcaagccttaatcat |
458 |
Q |
| |
|
|||||| |||||||| || ||||| ||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34106414 |
tgctttcttggcaggttatactttattttgttgctatagggtagcctttggcttcctttctctcttttgtaaacaggttcaggccttaatcat |
34106322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 21 - 389
Target Start/End: Original strand, 41114255 - 41114622
Alignment:
| Q |
21 |
ttggagcctgacacttataccgagcagcaacaggctttgttagcggctcatcctgaagtgcacaaattcttatcacaaactagagacattgttaaaaagg |
120 |
Q |
| |
|
|||||||||||||||| ||| |||||| |||| ||| |||||| |||||||| |||||||||||||||||||||||| |||| |||| || |||||||| |
|
|
| T |
41114255 |
ttggagcctgacacttttactgagcaggaacatgctatgttagaggctcatcttgaagtgcacaaattcttatcacacactactgacactgctaaaaagg |
41114354 |
T |
|
| Q |
121 |
tcaagagagggagacctagaaagcccaagagtcccaaaacattttctaacaccaaatcaaaacacaaaatcgctacagatcttactgagactggctttga |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | || | ||| ||||||||||||||||||| | || |||||||| |||||| |||| ||| |
|
|
| T |
41114355 |
gcaagagagggagacctagaaagcccaagagtcccatagcactatctggtaccaaatcaaaacacaaaacctctgcagatctttctgagatcggctctga |
41114454 |
T |
|
| Q |
221 |
tatagtgaatacaagatccaaacatggtgttatcaaaagcaatcctagatatgatgattagaggattatgaaattttgatactcatctattttgcataac |
320 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||| ||||| | ||||| |||||||||||||| |||||||||||| ||| || ||||| | || |
|
|
| T |
41114455 |
tactgtgaatacaagatccaaatatggtgttatcaaaagtaatcccaaatatggtgattagaggattaggaaattttgatattcaacttttttgttttac |
41114554 |
T |
|
| Q |
321 |
atatgctatatttgattagatttctttaggggcatgtgcagctctatgcttttttggcaggctacactt |
389 |
Q |
| |
|
| ||||||||| |||||||| |||||||||| |||||||||| ||| ||| |||||||||||||||| |
|
|
| T |
41114555 |
agatgctatatctgattagaattctttagggacatgtgcagc-ctacacttagttggcaggctacactt |
41114622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 205 - 415
Target Start/End: Original strand, 11084539 - 11084749
Alignment:
| Q |
205 |
ctgagactggctttgatatagtgaatacaagatccaaacatggtgttatcaaaagcaatcctagatatgatgattagaggattatgaaattttgatactc |
304 |
Q |
| |
|
||||||||| || ||||| ||||||| |||||||||||||||||| ||||||| |||||||| ||||| ||||| |||||||| ||||||||||||||| |
|
|
| T |
11084539 |
ctgagactgcctctgatactgtgaatataagatccaaacatggtgtcatcaaaatcaatcctaaatatggtgattggaggattaggaaattttgatactc |
11084638 |
T |
|
| Q |
305 |
atctattttgcataacatatgctatatttgattagatttctttaggggcatgtgcagctctatgcttttttggcaggctacactttgttttgttgctata |
404 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11084639 |
atctattttgcataacagatgctatatctgattagaattctttaggggcatgtgcagtcctatgctttcttggcaggctacactttgttttgttgctata |
11084738 |
T |
|
| Q |
405 |
ggatagcctta |
415 |
Q |
| |
|
|| |||||||| |
|
|
| T |
11084739 |
gggtagcctta |
11084749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 481 - 612
Target Start/End: Original strand, 3526143 - 3526274
Alignment:
| Q |
481 |
tgaattgggtaatatagttagagaaactaagtcgaaagtgtatttatttaaggaaattgttttttcaaaactatgggcatttgaaagtcaaattaaatcc |
580 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3526143 |
tgaattgggtaatatagtaagagaaactaagtcaaaagtgtatttatttaaggaaattgttttttcaaaaccatgggcatttgaaagtcaaattaaatcc |
3526242 |
T |
|
| Q |
581 |
cacctaatttgactcaagtaggatgtattcat |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
3526243 |
cacctaatttgactcaagtaggatgtattcat |
3526274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 365 - 446
Target Start/End: Original strand, 41114626 - 41114707
Alignment:
| Q |
365 |
tatgcttttttggcaggctacactttgttttgttgctataggatagcc-ttagcttcctttctctcttttgtaaacaggttca |
446 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||| || |||||| ||| |||||||||||||||||||| |
|
|
| T |
41114626 |
tatgctttcttggcaggctacacttagttttgttgctataggatagcctttggcttcc-ttccctcttttgtaaacaggttca |
41114707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 374 - 444
Target Start/End: Complemental strand, 45602954 - 45602886
Alignment:
| Q |
374 |
ttggcaggctacactttgttttgttgctataggatagccttagcttcctttctctcttttgtaaacaggtt |
444 |
Q |
| |
|
|||||| | ||||||||||||| ||| ||||||||| |||| | |||||||||||||||||||||||||| |
|
|
| T |
45602954 |
ttggcaagttacactttgttttattgatataggatatcctttg--tcctttctctcttttgtaaacaggtt |
45602886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 17 - 455
Target Start/End: Complemental strand, 34161307 - 34160868
Alignment:
| Q |
17 |
cacattggagcctgacacttataccgagcagcaacaggctttgttagcggctcatcctgaagtgcacaaattcttatcacaaactagagacattgttaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||| ||||||| |
|
|
| T |
34161307 |
cacattggagcctgacacttataccgagcagcaacaggctttgttagcggctcatcttgaagtgcacaaattcttatcacaacctacagacactgttaaa |
34161208 |
T |
|
| Q |
117 |
aaggtcaagagagggagacctagaaagcccaagagtcccaaaacattttctaacaccaaatcaaaacacaaaatcgctacagatcttactgagactggct |
216 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| || |||| |||||| |
|
|
| T |
34161207 |
aagggcaagagagggagacctagaaagcccaagagtcccaaagcattttctggcaccaaatcaaaacacaaaaccgctacagatcctattgagtctggct |
34161108 |
T |
|
| Q |
217 |
ttgatatagtgaatacaagatccaaacatggtgttatcaaaagcaatcctagatatgatgattagaggattatgaaattttgatactcatctattttgca |
316 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34161107 |
ctgatgctgtgaatacaagatccaaacatggtgttatcaaaagcaatcctaaatatggtgattagaggattaggaaattttgatactcatctattttgct |
34161008 |
T |
|
| Q |
317 |
taacatatgctatatttgattagatttctttaggggcatgtgcagctctatgcttttttggcaggctacactttgttttgttgctataggatagc-ctta |
415 |
Q |
| |
|
| ||||||||| ||| |||||||||||||||||||||||||||| | ||||||||| |||||| | ||||||||||||||||||||||||||||| || |
|
|
| T |
34161007 |
ttacatatgctttatctgattagatttctttaggggcatgtgcaaccctatgctttcttggcaagttacactttgttttgttgctataggatagcttttg |
34160908 |
T |
|
| Q |
416 |
gcttcctttctctcttttgtaaacaggttcaagccttaat |
455 |
Q |
| |
|
||||||||||||||||||||||||| | ||| |||||||| |
|
|
| T |
34160907 |
gcttcctttctctcttttgtaaacatgctcaggccttaat |
34160868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 71 - 456
Target Start/End: Original strand, 41309716 - 41310102
Alignment:
| Q |
71 |
tcctgaagtgcacaaattcttatcacaaactagagacattgttaaaaaggtcaagagagggagacctagaaagcccaagagtcccaaaacattttctaac |
170 |
Q |
| |
|
|||||||||| |||||| |||||||||||||| ||| | ||||||||| | |||||||||||||||||||||||||||||||| |||| || ||||| | |
|
|
| T |
41309716 |
tcctgaagtgaacaaatacttatcacaaactatagaaactgttaaaaaaggcaagagagggagacctagaaagcccaagagtctcaaagcactttctggc |
41309815 |
T |
|
| Q |
171 |
accaaatcaaaacacaaaatcgctacagatcttactgagactggctttgatatagtgaatacaagatccaaacatggtgttatcaaaagcaatcctagat |
270 |
Q |
| |
|
||||| ||||||||||||| | |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| |||||| | || |
|
|
| T |
41309816 |
accaactcaaaacacaaaacctctacagatcttactgagactggctctgatactgtgaatacaagatccaaacatggtgtaatcaaaatcaatcccaaat |
41309915 |
T |
|
| Q |
271 |
atgatgattagaggattatgaaattttgatactcatctattttgcataacatatgctatatttgattagatttctttaggggcatgtgcagctctatgct |
370 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
41309916 |
atggtgattagaggattaggaaattttgatactcatctattttgcataacagatgctatatctgattagaattctttaggggcatgtgcagccctatgct |
41310015 |
T |
|
| Q |
371 |
tttttggcaggctacactttgttttgttgctataggatagcc-ttagcttcctttctctcttttgtaaacaggttcaagccttaatc |
456 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| ||||| || || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41310016 |
ttcttggcaggctacactttgttttgttgctatagggtagcctttggcgtcctttctctcttttgtaaacaggttcaagccttaatc |
41310102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 237 - 456
Target Start/End: Original strand, 2049015 - 2049236
Alignment:
| Q |
237 |
tccaaacatggtgttatcaaaagcaatcctagatatgatgattagaggattatgaaattttgatactcatctattttgcataacatatgctatatttgat |
336 |
Q |
| |
|
|||||| | |||||||||||||||||||| | |||| |||||||||||||| ||| |||||||||||| ||||||||||||||| |||||| | |||| |
|
|
| T |
2049015 |
tccaaaaagggtgttatcaaaagcaatcccaaatattgtgattagaggattaggaaggtttgatactcatgtattttgcataacatctgctatgtctgat |
2049114 |
T |
|
| Q |
337 |
tag--atttctttaggggcatgtgcagctctatgcttttttggcaggctacactttgttttgttgctataggatagcc-ttagcttcctttctctctttt |
433 |
Q |
| |
|
||| | ||||||||||| || || ||| || | ||| ||||||||||| | |||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
2049115 |
tagaaaattctttaggggtatatgtagcccttcgttttcatggcaggctac---tcgttttgttgctataggatagcctttggcttcctttctctctttt |
2049211 |
T |
|
| Q |
434 |
gt--aaacaggttcaagccttaatc |
456 |
Q |
| |
|
|| ||| ||||||| ||||||||| |
|
|
| T |
2049212 |
gtgcaaataggttcaggccttaatc |
2049236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 391 - 456
Target Start/End: Complemental strand, 12763314 - 12763246
Alignment:
| Q |
391 |
gttttgttgctataggatagccttag-cttcctttctctcttttgt--aaacaggttcaagccttaatc |
456 |
Q |
| |
|
||||||||||||||||||||| || | ||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
12763314 |
gttttgttgctataggatagcttttggcttcctttctctcttttgtgtaaacaggttcaggccttaatc |
12763246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 250; Significance: 1e-138; HSPs: 17)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 25 - 456
Target Start/End: Original strand, 8858966 - 8859387
Alignment:
| Q |
25 |
agcctgacacttataccgagcagcaacaggctttgttagcggctcatcctgaagtgcacaaattcttatcacaaactagagacattgttaaaaaggtcaa |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||| ||| |
|
|
| T |
8858966 |
agcctgacacttataccgagcagcaacaggctttgttagcggctcatcctgaagtgcacaaattcttatcacaaactccagacactattaaaaagggcaa |
8859065 |
T |
|
| Q |
125 |
----gagagggagacctagaaagcccaagagtcccaaaacattttctaacaccaaatcaaaacacaaaatcgctacagatcttactgagactggctttga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||| ||||||||||||| || |
|
|
| T |
8859066 |
ttaagagagggagacctagaaagcccaagagtcccaaagcattttctggcaccaaatcaaaacaaaaaaccgctacagatctt---------------ga |
8859150 |
T |
|
| Q |
221 |
tatagtgaatacaagatccaaacatggtgttatcaaaagcaatcctagatatgatgattagaggattatgaaattttgatactcatctattttgcataac |
320 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| |
|
|
| T |
8859151 |
tactgtgaatacaagatccaaacatggtgttatcaaaagcaatcctagatattgtgattagaggattaggaaattttgatacttatttattttgcataac |
8859250 |
T |
|
| Q |
321 |
atatgctatatttgattagatttctttaggggcatgtgcagctctatgcttttttggcaggctacactttgttttgttgctataggatagcc-ttagctt |
419 |
Q |
| |
|
| ||||||||| | |||||||||| ||||||||||||||||| ||||||||| |||| |||||||||||||||||||| ||||||||||||| || |||| |
|
|
| T |
8859251 |
agatgctatatcttattagatttcattaggggcatgtgcagccctatgctttcttggtaggctacactttgttttgtttctataggatagcctttggctt |
8859350 |
T |
|
| Q |
420 |
cctttctctcttttgtaaacaggttcaagccttaatc |
456 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
8859351 |
cctttctctcttttgtaaacagattcaggccttaatc |
8859387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 237 - 456
Target Start/End: Complemental strand, 5764614 - 5764390
Alignment:
| Q |
237 |
tccaaacatggtgttatcaaaagcaatcctagatatgatgattagaggattatgaaattttgatactcatctattttgcataacatatgctatatttgat |
336 |
Q |
| |
|
|||||| |||||||||| |||| ||||| | |||| | |||||||||||| ||| ||||||||| || ||||||||||||||| |||||| | |||| |
|
|
| T |
5764614 |
tccaaaaatggtgttataaaaaacaatctcaaatattgtaattagaggattaggaaggtttgatacttatgtattttgcataacatctgctatgtctgat |
5764515 |
T |
|
| Q |
337 |
tagatttctttaggggcatgtgcagctctatgcttttt-tggcaggctacactttg-ttttgttgctataggatagcc-ttagcttcctttctctc--tt |
431 |
Q |
| |
|
|||| |||||||||| || || ||| || || ||||| ||||||||||| ||||| ||||||||||||||||||||| || |||||||||||||| || |
|
|
| T |
5764514 |
tagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctatt |
5764415 |
T |
|
| Q |
432 |
ttgtaaacaggttcaagccttaatc |
456 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
5764414 |
gtgtaaacaggttcaaaccttaatc |
5764390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 237 - 456
Target Start/End: Complemental strand, 5768149 - 5767925
Alignment:
| Q |
237 |
tccaaacatggtgttatcaaaagcaatcctagatatgatgattagaggattatgaaattttgatactcatctattttgcataacatatgctatatttgat |
336 |
Q |
| |
|
|||||| |||||||||| |||| ||||| | |||| | |||||||||||| ||| ||||||||| || ||||||||||||||| |||||| | |||| |
|
|
| T |
5768149 |
tccaaaaatggtgttataaaaaacaatctcaaatattgtaattagaggattaggaaggtttgatacttatgtattttgcataacatctgctatgtctgat |
5768050 |
T |
|
| Q |
337 |
tagatttctttaggggcatgtgcagctctatgcttttt-tggcaggctacactttg-ttttgttgctataggatagcc-ttagcttcctttctctc--tt |
431 |
Q |
| |
|
|||| |||||||||| || || ||| || || ||||| ||||||||||| ||||| ||||||||||||||||||||| || |||||||||||||| || |
|
|
| T |
5768049 |
tagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctatt |
5767950 |
T |
|
| Q |
432 |
ttgtaaacaggttcaagccttaatc |
456 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
5767949 |
gtgtaaacaggttcaaaccttaatc |
5767925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 237 - 456
Target Start/End: Complemental strand, 5771684 - 5771460
Alignment:
| Q |
237 |
tccaaacatggtgttatcaaaagcaatcctagatatgatgattagaggattatgaaattttgatactcatctattttgcataacatatgctatatttgat |
336 |
Q |
| |
|
|||||| |||||||||| |||| ||||| | |||| | |||||||||||| ||| ||||||||| || ||||||||||||||| |||||| | |||| |
|
|
| T |
5771684 |
tccaaaaatggtgttataaaaaacaatctcaaatattgtaattagaggattaggaaggtttgatacttatgtattttgcataacatctgctatgtctgat |
5771585 |
T |
|
| Q |
337 |
tagatttctttaggggcatgtgcagctctatgcttttt-tggcaggctacactttg-ttttgttgctataggatagcc-ttagcttcctttctctc--tt |
431 |
Q |
| |
|
|||| |||||||||| || || ||| || || ||||| ||||||||||| ||||| ||||||||||||||||||||| || |||||||||||||| || |
|
|
| T |
5771584 |
tagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctatt |
5771485 |
T |
|
| Q |
432 |
ttgtaaacaggttcaagccttaatc |
456 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
5771484 |
gtgtaaacaggttcaaaccttaatc |
5771460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 237 - 456
Target Start/End: Complemental strand, 5775219 - 5774995
Alignment:
| Q |
237 |
tccaaacatggtgttatcaaaagcaatcctagatatgatgattagaggattatgaaattttgatactcatctattttgcataacatatgctatatttgat |
336 |
Q |
| |
|
|||||| |||||||||| |||| ||||| | |||| | |||||||||||| ||| ||||||||| || ||||||||||||||| |||||| | |||| |
|
|
| T |
5775219 |
tccaaaaatggtgttataaaaaacaatctcaaatattgtaattagaggattaggaaggtttgatacttatgtattttgcataacatctgctatgtctgat |
5775120 |
T |
|
| Q |
337 |
tagatttctttaggggcatgtgcagctctatgcttttt-tggcaggctacactttg-ttttgttgctataggatagcc-ttagcttcctttctctc--tt |
431 |
Q |
| |
|
|||| |||||||||| || || ||| || || ||||| ||||||||||| ||||| ||||||||||||||||||||| || |||||||||||||| || |
|
|
| T |
5775119 |
tagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctatt |
5775020 |
T |
|
| Q |
432 |
ttgtaaacaggttcaagccttaatc |
456 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
5775019 |
gtgtaaacaggttcaaaccttaatc |
5774995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 237 - 456
Target Start/End: Complemental strand, 5778754 - 5778530
Alignment:
| Q |
237 |
tccaaacatggtgttatcaaaagcaatcctagatatgatgattagaggattatgaaattttgatactcatctattttgcataacatatgctatatttgat |
336 |
Q |
| |
|
|||||| |||||||||| |||| ||||| | |||| | |||||||||||| ||| ||||||||| || ||||||||||||||| |||||| | |||| |
|
|
| T |
5778754 |
tccaaaaatggtgttataaaaaacaatctcaaatattgtaattagaggattaggaaggtttgatacttatgtattttgcataacatctgctatgtctgat |
5778655 |
T |
|
| Q |
337 |
tagatttctttaggggcatgtgcagctctatgcttttt-tggcaggctacactttg-ttttgttgctataggatagcc-ttagcttcctttctctc--tt |
431 |
Q |
| |
|
|||| |||||||||| || || ||| || || ||||| ||||||||||| ||||| ||||||||||||||||||||| || |||||||||||||| || |
|
|
| T |
5778654 |
tagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctatt |
5778555 |
T |
|
| Q |
432 |
ttgtaaacaggttcaagccttaatc |
456 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
5778554 |
gtgtaaacaggttcaaaccttaatc |
5778530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 237 - 456
Target Start/End: Complemental strand, 5782289 - 5782065
Alignment:
| Q |
237 |
tccaaacatggtgttatcaaaagcaatcctagatatgatgattagaggattatgaaattttgatactcatctattttgcataacatatgctatatttgat |
336 |
Q |
| |
|
|||||| |||||||||| |||| ||||| | |||| | |||||||||||| ||| ||||||||| || ||||||||||||||| |||||| | |||| |
|
|
| T |
5782289 |
tccaaaaatggtgttataaaaaacaatctcaaatattgtaattagaggattaggaaggtttgatacttatgtattttgcataacatctgctatgtctgat |
5782190 |
T |
|
| Q |
337 |
tagatttctttaggggcatgtgcagctctatgcttttt-tggcaggctacactttg-ttttgttgctataggatagcc-ttagcttcctttctctc--tt |
431 |
Q |
| |
|
|||| |||||||||| || || ||| || || ||||| ||||||||||| ||||| ||||||||||||||||||||| || |||||||||||||| || |
|
|
| T |
5782189 |
tagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctatt |
5782090 |
T |
|
| Q |
432 |
ttgtaaacaggttcaagccttaatc |
456 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
5782089 |
gtgtaaacaggttcaaaccttaatc |
5782065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 237 - 456
Target Start/End: Complemental strand, 5785824 - 5785600
Alignment:
| Q |
237 |
tccaaacatggtgttatcaaaagcaatcctagatatgatgattagaggattatgaaattttgatactcatctattttgcataacatatgctatatttgat |
336 |
Q |
| |
|
|||||| |||||||||| |||| ||||| | |||| | |||||||||||| ||| ||||||||| || ||||||||||||||| |||||| | |||| |
|
|
| T |
5785824 |
tccaaaaatggtgttataaaaaacaatctcaaatattgtaattagaggattaggaaggtttgatacttatgtattttgcataacatctgctatgtctgat |
5785725 |
T |
|
| Q |
337 |
tagatttctttaggggcatgtgcagctctatgcttttt-tggcaggctacactttg-ttttgttgctataggatagcc-ttagcttcctttctctc--tt |
431 |
Q |
| |
|
|||| |||||||||| || || ||| || || ||||| ||||||||||| ||||| ||||||||||||||||||||| || |||||||||||||| || |
|
|
| T |
5785724 |
tagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctatt |
5785625 |
T |
|
| Q |
432 |
ttgtaaacaggttcaagccttaatc |
456 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
5785624 |
gtgtaaacaggttcaaaccttaatc |
5785600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 237 - 456
Target Start/End: Complemental strand, 5789359 - 5789135
Alignment:
| Q |
237 |
tccaaacatggtgttatcaaaagcaatcctagatatgatgattagaggattatgaaattttgatactcatctattttgcataacatatgctatatttgat |
336 |
Q |
| |
|
|||||| |||||||||| |||| ||||| | |||| | |||||||||||| ||| ||||||||| || ||||||||||||||| |||||| | |||| |
|
|
| T |
5789359 |
tccaaaaatggtgttataaaaaacaatctcaaatattgtaattagaggattaggaaggtttgatacttatgtattttgcataacatctgctatgtctgat |
5789260 |
T |
|
| Q |
337 |
tagatttctttaggggcatgtgcagctctatgcttttt-tggcaggctacactttg-ttttgttgctataggatagcc-ttagcttcctttctctc--tt |
431 |
Q |
| |
|
|||| |||||||||| || || ||| || || ||||| ||||||||||| ||||| ||||||||||||||||||||| || |||||||||||||| || |
|
|
| T |
5789259 |
tagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctatt |
5789160 |
T |
|
| Q |
432 |
ttgtaaacaggttcaagccttaatc |
456 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
5789159 |
gtgtaaacaggttcaaaccttaatc |
5789135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 237 - 456
Target Start/End: Complemental strand, 5792894 - 5792670
Alignment:
| Q |
237 |
tccaaacatggtgttatcaaaagcaatcctagatatgatgattagaggattatgaaattttgatactcatctattttgcataacatatgctatatttgat |
336 |
Q |
| |
|
|||||| |||||||||| |||| ||||| | |||| | |||||||||||| ||| ||||||||| || ||||||||||||||| |||||| | |||| |
|
|
| T |
5792894 |
tccaaaaatggtgttataaaaaacaatctcaaatattgtaattagaggattaggaaggtttgatacttatgtattttgcataacatctgctatgtctgat |
5792795 |
T |
|
| Q |
337 |
tagatttctttaggggcatgtgcagctctatgcttttt-tggcaggctacactttg-ttttgttgctataggatagcc-ttagcttcctttctctc--tt |
431 |
Q |
| |
|
|||| |||||||||| || || ||| || || ||||| ||||||||||| ||||| ||||||||||||||||||||| || |||||||||||||| || |
|
|
| T |
5792794 |
tagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctatt |
5792695 |
T |
|
| Q |
432 |
ttgtaaacaggttcaagccttaatc |
456 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
5792694 |
gtgtaaacaggttcaaaccttaatc |
5792670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 237 - 456
Target Start/End: Complemental strand, 5796429 - 5796205
Alignment:
| Q |
237 |
tccaaacatggtgttatcaaaagcaatcctagatatgatgattagaggattatgaaattttgatactcatctattttgcataacatatgctatatttgat |
336 |
Q |
| |
|
|||||| |||||||||| |||| ||||| | |||| | |||||||||||| ||| ||||||||| || ||||||||||||||| |||||| | |||| |
|
|
| T |
5796429 |
tccaaaaatggtgttataaaaaacaatctcaaatattgtaattagaggattaggaaggtttgatacttatgtattttgcataacatctgctatgtctgat |
5796330 |
T |
|
| Q |
337 |
tagatttctttaggggcatgtgcagctctatgcttttt-tggcaggctacactttg-ttttgttgctataggatagcc-ttagcttcctttctctc--tt |
431 |
Q |
| |
|
|||| |||||||||| || || ||| || || ||||| ||||||||||| ||||| ||||||||||||||||||||| || |||||||||||||| || |
|
|
| T |
5796329 |
tagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctatt |
5796230 |
T |
|
| Q |
432 |
ttgtaaacaggttcaagccttaatc |
456 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
5796229 |
gtgtaaacaggttcaaaccttaatc |
5796205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 237 - 456
Target Start/End: Complemental strand, 5799964 - 5799740
Alignment:
| Q |
237 |
tccaaacatggtgttatcaaaagcaatcctagatatgatgattagaggattatgaaattttgatactcatctattttgcataacatatgctatatttgat |
336 |
Q |
| |
|
|||||| |||||||||| |||| ||||| | |||| | |||||||||||| ||| ||||||||| || ||||||||||||||| |||||| | |||| |
|
|
| T |
5799964 |
tccaaaaatggtgttataaaaaacaatctcaaatattgtaattagaggattaggaaggtttgatacttatgtattttgcataacatctgctatgtctgat |
5799865 |
T |
|
| Q |
337 |
tagatttctttaggggcatgtgcagctctatgcttttt-tggcaggctacactttg-ttttgttgctataggatagcc-ttagcttcctttctctc--tt |
431 |
Q |
| |
|
|||| |||||||||| || || ||| || || ||||| ||||||||||| ||||| ||||||||||||||||||||| || |||||||||||||| || |
|
|
| T |
5799864 |
tagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctatt |
5799765 |
T |
|
| Q |
432 |
ttgtaaacaggttcaagccttaatc |
456 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
5799764 |
gtgtaaacaggttcaaaccttaatc |
5799740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 237 - 456
Target Start/End: Complemental strand, 5803499 - 5803275
Alignment:
| Q |
237 |
tccaaacatggtgttatcaaaagcaatcctagatatgatgattagaggattatgaaattttgatactcatctattttgcataacatatgctatatttgat |
336 |
Q |
| |
|
|||||| |||||||||| |||| ||||| | |||| | |||||||||||| ||| ||||||||| || ||||||||||||||| |||||| | |||| |
|
|
| T |
5803499 |
tccaaaaatggtgttataaaaaacaatctcaaatattgtaattagaggattaggaaggtttgatacttatgtattttgcataacatctgctatgtctgat |
5803400 |
T |
|
| Q |
337 |
tagatttctttaggggcatgtgcagctctatgcttttt-tggcaggctacactttg-ttttgttgctataggatagcc-ttagcttcctttctctc--tt |
431 |
Q |
| |
|
|||| |||||||||| || || ||| || || ||||| ||||||||||| ||||| ||||||||||||||||||||| || |||||||||||||| || |
|
|
| T |
5803399 |
tagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctatt |
5803300 |
T |
|
| Q |
432 |
ttgtaaacaggttcaagccttaatc |
456 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
5803299 |
gtgtaaacaggttcaaaccttaatc |
5803275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 237 - 456
Target Start/End: Complemental strand, 5807034 - 5806810
Alignment:
| Q |
237 |
tccaaacatggtgttatcaaaagcaatcctagatatgatgattagaggattatgaaattttgatactcatctattttgcataacatatgctatatttgat |
336 |
Q |
| |
|
|||||| |||||||||| |||| ||||| | |||| | |||||||||||| ||| ||||||||| || ||||||||||||||| |||||| | |||| |
|
|
| T |
5807034 |
tccaaaaatggtgttataaaaaacaatctcaaatattgtaattagaggattaggaaggtttgatacttatgtattttgcataacatctgctatgtctgat |
5806935 |
T |
|
| Q |
337 |
tagatttctttaggggcatgtgcagctctatgcttttt-tggcaggctacactttg-ttttgttgctataggatagcc-ttagcttcctttctctc--tt |
431 |
Q |
| |
|
|||| |||||||||| || || ||| || || ||||| ||||||||||| ||||| ||||||||||||||||||||| || |||||||||||||| || |
|
|
| T |
5806934 |
tagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctatt |
5806835 |
T |
|
| Q |
432 |
ttgtaaacaggttcaagccttaatc |
456 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
5806834 |
gtgtaaacaggttcaaaccttaatc |
5806810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 237 - 456
Target Start/End: Complemental strand, 5810569 - 5810345
Alignment:
| Q |
237 |
tccaaacatggtgttatcaaaagcaatcctagatatgatgattagaggattatgaaattttgatactcatctattttgcataacatatgctatatttgat |
336 |
Q |
| |
|
|||||| |||||||||| |||| ||||| | |||| | |||||||||||| ||| ||||||||| || ||||||||||||||| |||||| | |||| |
|
|
| T |
5810569 |
tccaaaaatggtgttataaaaaacaatctcaaatattgtaattagaggattaggaaggtttgatacttatgtattttgcataacatctgctatgtctgat |
5810470 |
T |
|
| Q |
337 |
tagatttctttaggggcatgtgcagctctatgcttttt-tggcaggctacactttg-ttttgttgctataggatagcc-ttagcttcctttctctc--tt |
431 |
Q |
| |
|
|||| |||||||||| || || ||| || || ||||| ||||||||||| ||||| ||||||||||||||||||||| || |||||||||||||| || |
|
|
| T |
5810469 |
tagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctatt |
5810370 |
T |
|
| Q |
432 |
ttgtaaacaggttcaagccttaatc |
456 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
5810369 |
gtgtaaacaggttcaaaccttaatc |
5810345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 237 - 456
Target Start/End: Complemental strand, 5814104 - 5813880
Alignment:
| Q |
237 |
tccaaacatggtgttatcaaaagcaatcctagatatgatgattagaggattatgaaattttgatactcatctattttgcataacatatgctatatttgat |
336 |
Q |
| |
|
|||||| |||||||||| |||| ||||| | |||| | |||||||||||| ||| ||||||||| || ||||||||||||||| |||||| | |||| |
|
|
| T |
5814104 |
tccaaaaatggtgttataaaaaacaatctcaaatattgtaattagaggattaggaaggtttgatacttatgtattttgcataacatctgctatgtctgat |
5814005 |
T |
|
| Q |
337 |
tagatttctttaggggcatgtgcagctctatgcttttt-tggcaggctacactttg-ttttgttgctataggatagcc-ttagcttcctttctctc--tt |
431 |
Q |
| |
|
|||| |||||||||| || || ||| || || ||||| ||||||||||| ||||| ||||||||||||||||||||| || |||||||||||||| || |
|
|
| T |
5814004 |
tagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctatt |
5813905 |
T |
|
| Q |
432 |
ttgtaaacaggttcaagccttaatc |
456 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
5813904 |
gtgtaaacaggttcaaaccttaatc |
5813880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 237 - 456
Target Start/End: Complemental strand, 5817639 - 5817415
Alignment:
| Q |
237 |
tccaaacatggtgttatcaaaagcaatcctagatatgatgattagaggattatgaaattttgatactcatctattttgcataacatatgctatatttgat |
336 |
Q |
| |
|
|||||| |||||||||| |||| ||||| | |||| | |||||||||||| ||| ||||||||| || ||||||||||||||| |||||| | |||| |
|
|
| T |
5817639 |
tccaaaaatggtgttataaaaaacaatctcaaatattgtaattagaggattaggaaggtttgatacttatgtattttgcataacatctgctatgtctgat |
5817540 |
T |
|
| Q |
337 |
tagatttctttaggggcatgtgcagctctatgcttttt-tggcaggctacactttg-ttttgttgctataggatagcc-ttagcttcctttctctc--tt |
431 |
Q |
| |
|
|||| |||||||||| || || ||| || || ||||| ||||||||||| ||||| ||||||||||||||||||||| || |||||||||||||| || |
|
|
| T |
5817539 |
tagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctatt |
5817440 |
T |
|
| Q |
432 |
ttgtaaacaggttcaagccttaatc |
456 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
5817439 |
gtgtaaacaggttcaaaccttaatc |
5817415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 71 - 456
Target Start/End: Complemental strand, 34467034 - 34466651
Alignment:
| Q |
71 |
tcctgaagtgcacaaattcttatcacaaactagagacattgttaaaaaggtcaagagagggagacctagaaagcccaagagtcccaaaacattttctaac |
170 |
Q |
| |
|
|||| ||||| |||||| |||||||||||||| | | | ||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||| | |
|
|
| T |
34467034 |
tccttaagtgaacaaatacttatcacaaactacaaaaactgttaaaaagggcaagagagggagacctagaaagcccaagagtcccaaagcactttctggc |
34466935 |
T |
|
| Q |
171 |
accaaatcaaaacacaaaatcgctacagatcttactgagactggctttgatatagtgaatacaagatccaaacatggtgttatcaaaagcaatcctagat |
270 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| || | ||| |||||||||||||||||||||| |||||||||||||||||| | || |
|
|
| T |
34466934 |
accaaatcaaaacacaaaatctctacagatcttactgagactgactctcatactgtgaatacaagatccaaacatgatgttatcaaaagcaatcccaaat |
34466835 |
T |
|
| Q |
271 |
atgatgattagaggattatgaaattttgatactcatctattttgcataacatatgctatatttgattagatttctttaggggcatgtgcagctctatgct |
370 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34466834 |
atggtgattagaggattaggaaattttgatactcatctattttgcataacagatgctatatctaattagatttctttaggggcatgtgcagctctatgct |
34466735 |
T |
|
| Q |
371 |
tttttggcaggctacactttgttttgttgctataggatagcc-ttagcttcctttctctcttttgtaaacaggttcaagccttaatc |
456 |
Q |
| |
|
|| | |||||||||||| |||||||| |||||||||||| || ||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
34466734 |
ttcatagcaggctacact---ttttgttgttataggatagcctttggcttcctttctctcttttgtaaacaggttcatgctttaatc |
34466651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 456
Target Start/End: Complemental strand, 3847763 - 3847696
Alignment:
| Q |
392 |
ttttgttgctataggatagccttag-cttcctttc--tctcttttgtaaacaggttcaagccttaatc |
456 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||| ||||||||||||| ||| ||||||||| |
|
|
| T |
3847763 |
ttttgttgctataggatagccttagacttcctttccttcttttttgtaaacagggtcaggccttaatc |
3847696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 456
Target Start/End: Complemental strand, 51499785 - 51499682
Alignment:
| Q |
357 |
tgcagctctatgcttttttggcaggctacactttgtttt-gttgctataggatagcctta-gcttcctttctctcttt--tgtaaacaggttcaagcctt |
452 |
Q |
| |
|
|||||| || ||||||| ||||||||| | ||||||||| |||| || |||||||||||| ||||||||||| ||||| ||||||||| |||| ||||| |
|
|
| T |
51499785 |
tgcagccctttgcttttatggcaggctcctctttgtttttgttgataaaggatagccttaggcttcctttctttcttttgtgtaaacagattcaggcctt |
51499686 |
T |
|
| Q |
453 |
aatc |
456 |
Q |
| |
|
|||| |
|
|
| T |
51499685 |
aatc |
51499682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 21 - 456
Target Start/End: Original strand, 21203049 - 21203480
Alignment:
| Q |
21 |
ttggagcctgacacttataccgagcagcaacaggctttgttagcggctcatcctgaagtgcacaaattcttatcacaaactagagacattgttaaaaagg |
120 |
Q |
| |
|
||||||||||| |||| ||| || ||||||||||| |||||| | ||||||||||||||||||||||||||||||| | || |||| || |||||||| |
|
|
| T |
21203049 |
ttggagcctgaaacttttacttagtagcaacaggctctgttagagactcatcctgaagtgcacaaattcttatcacacattactgacactgctaaaaagg |
21203148 |
T |
|
| Q |
121 |
tcaagagagggagacctagaaagcccaagagtcccaaaacattttctaacaccaaatcaaaacacaaaatcgctacagatcttactgagactggctttga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || | || | ||| |||||||||||||||||||| | |||||||||||||||||| ||||| ||| |
|
|
| T |
21203149 |
gcaagagagggagacctagaaagcccaagagtctcatagcactatctggcaccaaatcaaaacacaaaacctctacagatcttactgagattggctctga |
21203248 |
T |
|
| Q |
221 |
tatagtgaatacaagatccaaacatggtgttatcaaaagcaatcctagatatgatgattagaggattatgaaattttgatactcatctattttgcataac |
320 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||| |||||| |||||| | || |
|
|
| T |
21203249 |
tactgtgaatactagatccaaacatggtgttatcaaaagcaatcccaaatatgatgattagaggattaggaaattttgatattcatcttttttgcttcac |
21203348 |
T |
|
| Q |
321 |
atatgctatatttgattagatttctttaggggcatgtgcagctctatgcttttttggcaggctacactttgttttgttgctataggatagccttag-ctt |
419 |
Q |
| |
|
| ||||||||| |||||||| |||||||||| |||||||||| || ||||| |||||||||||||| ||||||||||||||||||||||| | ||| |
|
|
| T |
21203349 |
acatgctatatatgattagaattctttagggacatgtgcagccataagctttcttggcaggctacac----ttttgttgctataggatagcctttgcctt |
21203444 |
T |
|
| Q |
420 |
cctttctctcttttgtaaacaggttcaagccttaatc |
456 |
Q |
| |
|
|||||| |||||||||||| ||||||| ||||||||| |
|
|
| T |
21203445 |
cctttc-ctcttttgtaaataggttcaggccttaatc |
21203480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 435
Target Start/End: Original strand, 45212799 - 45212962
Alignment:
| Q |
275 |
tgattagaggattatgaaattttgatactcatctattttgcataacatatgctatatttgattagatttctttaggggcatgtgcagctctatgctttt- |
373 |
Q |
| |
|
|||||||||||||| ||| |||||||||||| |||||||||||||| ||||||| |||||||| || |||| || ||| | || || ||||||| |
|
|
| T |
45212799 |
tgattagaggattaggaaggtttgatactcatatattttgcataacagatgctatgcctgattagaattttttaaaggtatgcacggccctttgcttttc |
45212898 |
T |
|
| Q |
374 |
ttggcaggctacacttt-gttttgttgctataggatagc-cttagcttcctttctctcttttgt |
435 |
Q |
| |
|
||||||| ||| |||| |||||||||||||||||| | || |||||||||||||||||||| |
|
|
| T |
45212899 |
atggcaggttactctttatttttgttgctataggatatcatttggcttcctttctctcttttgt |
45212962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 21 - 438
Target Start/End: Original strand, 37370182 - 37370600
Alignment:
| Q |
21 |
ttggagcctgacacttataccgagcagcaacaggctttgttagcggctcatcctgaagtgcacaaattcttatcacaaactagagacattgttaaaaagg |
120 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |||| |||| || |||||||| |
|
|
| T |
37370182 |
ttggagcctgacacttttactgagcagcaattggctctgttagaggctcatcctgaagtgcacaaattcttatcacacactactgacactgctaaaaagg |
37370281 |
T |
|
| Q |
121 |
tcaagagagggagacctagaaagcccaagagtcccaaaacattttctaacaccaaatcaaaacacaaaatcgctacagatcttactgagactggctttga |
220 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||| |||| | ||| ||||||||| ||||||||||| | ||||| |||||| |||||||| || ||| |
|
|
| T |
37370282 |
gcaagagagggagacctagaaaggccaagaggcccataacagtatctgacaccaaataaaaacacaaaacctctacaaatcttattgagactgactctga |
37370381 |
T |
|
| Q |
221 |
tatagtgaatacaagatccaaacatggtgttatcaaaagcaatcctagatatgatgattagaggattatgaaattttgatactcatctattttgcataac |
320 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||||| |||||| | |||||||||||||||||||| |||||||||||| |||||| |||||| | || |
|
|
| T |
37370382 |
taatatgaatacaagattcaaacatggtgttatcaaaaacaatcccaaatatgatgattagaggattaggaaattttgatattcatcttttttgctttac |
37370481 |
T |
|
| Q |
321 |
atatgctatatttgattagatttctttaggggcatgtgcagctctatgcttttttggcaggctacactttgttttgttgctataggatag-ccttagctt |
419 |
Q |
| |
|
| ||||||||| ||||||||||||| ||||| ||| || ||| ||| |||| |||||||||||||||| ||||||||| |||||||||| | ||||||| |
|
|
| T |
37370482 |
agatgctatatctgattagatttctgtagggacatttgaagccatattctttattggcaggctacacttagttttgttgttataggatagtctttagctt |
37370581 |
T |
|
| Q |
420 |
cctttctctcttttgtaaa |
438 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
37370582 |
cctttcactcttttgtaaa |
37370600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 242 - 455
Target Start/End: Original strand, 34483856 - 34484070
Alignment:
| Q |
242 |
acatggtgttatcaaaagcaatcctagatatgatgattagaggattatgaaattttgatactcatctattttgcataacatatgctatatttgattagat |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||| | ||||| ||| ||||||||| |
|
|
| T |
34483856 |
acatggtgttatcaaaagcaatcctagatatggtgattagaggaatatgaaattttgatactcatctattttacataatagatgctttatctgattagat |
34483955 |
T |
|
| Q |
342 |
ttctttaggggcatgtgcagctctatgcttttttggcaggctacactttgttttgttgctataggatagcctta-gcttcctttctctcttttgtaaaca |
440 |
Q |
| |
|
|| ||| | | |||||||||| ||||||| |||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
34483956 |
tttttttgagacatgtgcagccttatgcttccttggcatgttacactttgttttgttgctataggatagccttaggcttcctttctctcttttgtaaata |
34484055 |
T |
|
| Q |
441 |
ggttcaagccttaat |
455 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
34484056 |
ggttcagaccttaat |
34484070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 237 - 455
Target Start/End: Original strand, 38836170 - 38836390
Alignment:
| Q |
237 |
tccaaacatggtgttatcaaaagcaatcctagatatgatgattagaggattatgaaattttgatactcatctattttgcataacatatgctatatttgat |
336 |
Q |
| |
|
|||||| |||||||||||||||||||||| | |||| |||||||||||||| ||| |||||||||||| |||||||||||||||||| ||| | |||| |
|
|
| T |
38836170 |
tccaaaaatggtgttatcaaaagcaatcccaaatattgtgattagaggattaggaagatttgatactcatgtattttgcataacatatgatatgtctgat |
38836269 |
T |
|
| Q |
337 |
t--agatttctttaggggcatgtgcagctctatgcttttttggcaggctacactttgttttgttgctataggatagcc-ttagcttcctttctctcttt- |
432 |
Q |
| |
|
| ||| |||||| |||| || || ||| || | ||| || |||||||| | |||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
38836270 |
tagagaattcttttggggtatatgtagcccttcgttttcatgacaggctac---tcgttttgttgctataggatagcctttggcttcctttctctctttt |
38836366 |
T |
|
| Q |
433 |
-tgtaaacaggttcaagccttaat |
455 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
38836367 |
gtgtaaacaggttcagaccttaat |
38836390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 237 - 456
Target Start/End: Complemental strand, 49094584 - 49094359
Alignment:
| Q |
237 |
tccaaacatggtgttatcaaaagcaatcctagatatga-tgattagaggattatgaaattttgatactcatctattttgcataacatatgctatatttga |
335 |
Q |
| |
|
|||||| | |||||||||||||||||||| | |||| |||||||||||||| ||| |||| ||||||| |||||||||||| | |||||| | || |
|
|
| T |
49094584 |
tccaaaaaaggtgttatcaaaagcaatcccaaatatttgtgattagaggattaggaaggtttggtactcatatattttgcataatagttgctatgtcaga |
49094485 |
T |
|
| Q |
336 |
ttagatttctttaggggcatgtgcagctctatgctttt-ttggcaggctacactttg-ttttgttgctataggatagcc-ttagcttcctttctctcttt |
432 |
Q |
| |
|
|||| ||||||||||| | ||||||| | ||||||| || |||| ||| ||||| |||||||||||||||||| || || | ||| ||||||||||| |
|
|
| T |
49094484 |
gtagaattctttaggggtacgtgcagccatttgcttttcatgccaggatactctttgtttttgttgctataggataacctttggtttcttttctctcttt |
49094385 |
T |
|
| Q |
433 |
tg--taaacaggttcaagccttaatc |
456 |
Q |
| |
|
|| |||||| ||||||||||||||| |
|
|
| T |
49094384 |
tgtataaacaagttcaagccttaatc |
49094359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 456
Target Start/End: Original strand, 39540534 - 39540600
Alignment:
| Q |
393 |
tttgttgctataggatagcctta-gcttcctttctctcttt--tgtaaacaggttcaagccttaatc |
456 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| | ||||| |||||| ||||||| ||||||||| |
|
|
| T |
39540534 |
tttgttgctataggatagccttaggcttcctttatttcttttgtgtaaaaaggttcaggccttaatc |
39540600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 82 - 456
Target Start/End: Complemental strand, 40318807 - 40318433
Alignment:
| Q |
82 |
acaaattcttatcacaaactagagacattgttaaaaaggtcaagagagggagacctagaaagcccaagagtcccaaaacattttctaacaccaaatcaaa |
181 |
Q |
| |
|
|||||| |||||||||||||| ||| | ||||||||||| |||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||| |
|
|
| T |
40318807 |
acaaatacttatcacaaactacagaaactgttaaaaagggcaagagagggagacctaggaagcccaagagtcccaacgcactttctggcaccaaatcaaa |
40318708 |
T |
|
| Q |
182 |
acacaaaatcgctacagatcttactgagactggctttgatatagtgaatacaagatccaaacatggtgttatcaaaagcaatcctagatatgatgattag |
281 |
Q |
| |
|
|||||||| | ||| |||||||||||||||| ||| ||||| |||||||||||| ||||||||| |||||||||| ||||| | ||||| ||||||| |
|
|
| T |
40318707 |
acacaaaacctctatagatcttactgagactagctctgatactgtgaatacaagagccaaacatgacattatcaaaagtaatcccaaatatggtgattag |
40318608 |
T |
|
| Q |
282 |
aggattatgaaattttgatactcatctattttgcataacatatgctatatttgattagatttctttaggggcatgtgcagctctatgcttttttggcagg |
381 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| | ||||||||| ||||| || ||||||| |||||||||| | ||||||||| |||||||| |
|
|
| T |
40318607 |
aggattaggaaattttgatactcatctattttgcataagagatgctatatctgatttgaattcttta-aggcatgtgcaaccctatgctttcttggcagg |
40318509 |
T |
|
| Q |
382 |
ctacactttgttttgttgctataggatagcc-ttagcttcctttctctcttttgtaaacaggttcaagccttaatc |
456 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||| || |||||| |
|
|
| T |
40318508 |
ctacactttgttttgttgctataggatagcctttggcttcctttctctcttttgtaaataggttcaggctttaatc |
40318433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 71 - 435
Target Start/End: Complemental strand, 15796268 - 15795904
Alignment:
| Q |
71 |
tcctgaagtgcacaaattcttatcacaaactagagacattgttaaaaaggtcaagagagggagacctagaaagcccaagagtcccaaaacattttctaac |
170 |
Q |
| |
|
|||||||||| |||||| ||||||||||| || | | | || ||||||| |||||||||||| |||||||||| |||||||||||| || ||||| || |
|
|
| T |
15796268 |
tcctgaagtgaacaaatacttatcacaaattacaaaaaccgtcaaaaagggtaagagagggagatctagaaagcctaagagtcccaaatcactttctgac |
15796169 |
T |
|
| Q |
171 |
accaaatcaaaacacaaaatcgctacagatcttactgagactggctttgatatagtgaatacaagatccaaacatggtgttatcaaaagcaatcctagat |
270 |
Q |
| |
|
||||||||||||||| ||| | ||||||||||||| |||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||| | || |
|
|
| T |
15796168 |
accaaatcaaaacactaaacctctacagatcttaccgagactggctctgatactgtgaatacaagatccaaacatgatgttatcaaaagcaatcccaaat |
15796069 |
T |
|
| Q |
271 |
atgatgattagaggattatgaaattttgatactcatctattttgcataacatatgctatatttgattagatttctttaggggcatgtgcagctctatgct |
370 |
Q |
| |
|
|||||||||||||||||| ||||||| | ||||||||||| |||||||| | ||| ||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
15796068 |
atgatgattagaggattaggaaatttcgttactcatctatgttgcataatagatgttatatctgattagatttctttaggggcatgtgcagccctatgc- |
15795970 |
T |
|
| Q |
371 |
tttttggcaggctacactttgttttgttgctataggatagccttag-cttcctttctctcttttgt |
435 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| |||||| | |||| |||||||||||||| |
|
|
| T |
15795969 |
tttctggcaggctacactttgttttgttgctataggaaagcctttgacttcatttctctcttttgt |
15795904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 134 - 456
Target Start/End: Complemental strand, 2612090 - 2611767
Alignment:
| Q |
134 |
acctagaaagcccaagagtcccaaaacattttctaacaccaaatcaaaacacaaaatcgctacagatcttactgagactggctttgatatagtgaataca |
233 |
Q |
| |
|
|||||||||||||||||||| || | || | ||| |||||||||||||||||||| | ||| |||||||| |||||| |||| ||||| |||| |||| |
|
|
| T |
2612090 |
acctagaaagcccaagagtctcatagcactatctggcaccaaatcaaaacacaaaacctctagagatcttattgagaccggctctgatactgtgactaca |
2611991 |
T |
|
| Q |
234 |
agatccaaacatggtgttatcaaaagcaatcctagatatgatgattagaggattatgaaattttgatactcatctattttgcataacatatgctatattt |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||| ||||||| |||||| |||||||||||| |||||| |||||| | ||| ||||||||| | |
|
|
| T |
2611990 |
agatccaaacatggtgttatcaaaagcaatctcaaatatggtgattagcggattaggaaattttgatattcatcttttttgctttacagatgctatatct |
2611891 |
T |
|
| Q |
334 |
gattagatttctttaggggcatgtgcagctctatgcttttttggcaggctacactttgttttgttgctataggatagcc-ttagcttcctttctctcttt |
432 |
Q |
| |
|
||||||| ||||||| || ||| |||||| |||| ||| |||||||||||| ||| ||||||||||| |||||||||| || |||||||||| |||||| |
|
|
| T |
2611890 |
gattagaattctttaaggacatatgcagccatatgttttcttggcaggctactcttagttttgttgctttaggatagcctttggcttcctttccctcttt |
2611791 |
T |
|
| Q |
433 |
tgtaaacaggttcaagccttaatc |
456 |
Q |
| |
|
|||||| ||||||| ||||||||| |
|
|
| T |
2611790 |
tgtaaataggttcaggccttaatc |
2611767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 2612846 - 2612732
Alignment:
| Q |
21 |
ttggagcctgacacttataccgagcagcaacaggctttgttagcggctcatcctgaagtgcacaaattcttatcacaaactagagacattgttaaaaagg |
120 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||| || |||||| ||||||||||||||||||| ||||||||||||| | || |||| || |||||||| |
|
|
| T |
2612846 |
ttggagcctgacacttttactgagcagcaacagactctgttagaggctcatcctgaagtgcacgaattcttatcacacaatattgacactgctaaaaagg |
2612747 |
T |
|
| Q |
121 |
tcaagagagggagac |
135 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
2612746 |
gcaagagagggagac |
2612732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University