View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20609_low_3 (Length: 450)

Name: NF20609_low_3
Description: NF20609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20609_low_3
NF20609_low_3
[»] chr6 (17 HSPs)
chr6 (12-359)||(26828594-26828941)
chr6 (123-257)||(26641207-26641334)
chr6 (123-257)||(26747173-26747300)
chr6 (298-427)||(26641396-26641532)
chr6 (298-427)||(26747362-26747498)
chr6 (14-125)||(26640893-26641006)
chr6 (14-125)||(26746859-26746972)
chr6 (133-202)||(26890864-26890933)
chr6 (93-125)||(26853950-26853982)
chr6 (81-120)||(27652025-27652064)
chr6 (80-130)||(27422372-27422422)
chr6 (80-114)||(27713841-27713875)
chr6 (75-125)||(31289527-31289577)
chr6 (81-125)||(26631735-26631779)
chr6 (81-125)||(26737710-26737754)
chr6 (93-125)||(26966392-26966424)
chr6 (93-121)||(27713930-27713958)
[»] chr4 (1 HSPs)
chr4 (124-253)||(18682666-18682788)
[»] chr8 (1 HSPs)
chr8 (79-125)||(29269792-29269838)
[»] scaffold0349 (2 HSPs)
scaffold0349 (80-114)||(18069-18103)
scaffold0349 (93-121)||(17986-18014)
[»] scaffold0003 (1 HSPs)
scaffold0003 (80-130)||(64941-64991)


Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 12 - 359
Target Start/End: Original strand, 26828594 - 26828941
Alignment:
Q  12 atgaagcatggaggaggacgaggttttcaccaatccgtacggaaagagtaaatcagataaggatcagattttctgagacacaacttgtgtagcagcaaca 111  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  26828594 atgaagcatggaggaggacgaggttttcaccaatccatacggaaagagtaaatcagataaggatcagattttctgagacacaacttgtgtagaagcaata 26828693  T
Q  112 acactgtatggctcatgtacatatgattaaattgcctttaggaatacaagtgtttgtacatactgtgatattgaaagatggttcctcacaaatcacaatc 211  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26828694 acgctgtatggctcatgtacatatgattaaattgcctttaggaatacaagtgtttgtacatactgtgatattgaaagatagttcctcacaaatcacaatc 26828793  T
Q  212 tatgttcaatgatgtgaacttccatttcaaaaagttggatgcatagnnnnnnnnnnnnnnnnnnnnnnnctcagttcaagtgtttgattatggtacttca 311  Q
    |||||||||||| || ||||||||||||||||||||||||||||||                       |||||||||||||||||||||||||||||||    
T  26828794 tatgttcaatgacgtaaacttccatttcaaaaagttggatgcatagtttatatattttttttttattttctcagttcaagtgtttgattatggtacttca 26828893  T
Q  312 atgcaatgtagatagcgtttcaaaccaagtatagtcacactccagagg 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26828894 atgcaatgtagatagcgtttcaaaccaagtatagtcacactccagagg 26828941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 123 - 257
Target Start/End: Original strand, 26641207 - 26641334
Alignment:
Q  123 ctcatgtacatatgattaaattgcctttaggaatacaagtgtttgtacatactgtgatattgaaagatggttcctcacaaatcacaatctatgttcaatg 222  Q
    ||||||| |||||||||||||||  ||||||||||||||||||| |||||||||||||||||| |||||||||       ||||||||||  ||||||||    
T  26641207 ctcatgttcatatgattaaattgattttaggaatacaagtgtttctacatactgtgatattgacagatggttc-------atcacaatctcagttcaatg 26641299  T
Q  223 atgtgaacttccatttcaaaaagttggatgcatag 257  Q
    |||||||||||||||||||||| ||||||||||||    
T  26641300 atgtgaacttccatttcaaaaatttggatgcatag 26641334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 123 - 257
Target Start/End: Original strand, 26747173 - 26747300
Alignment:
Q  123 ctcatgtacatatgattaaattgcctttaggaatacaagtgtttgtacatactgtgatattgaaagatggttcctcacaaatcacaatctatgttcaatg 222  Q
    ||||||| |||||||||||||||  ||||||||||||||||||| |||||||||||||||||| |||||||||       ||||||||||  ||||||||    
T  26747173 ctcatgttcatatgattaaattgattttaggaatacaagtgtttctacatactgtgatattgacagatggttc-------atcacaatctcagttcaatg 26747265  T
Q  223 atgtgaacttccatttcaaaaagttggatgcatag 257  Q
    |||||||||||||||||||||| ||||||||||||    
T  26747266 atgtgaacttccatttcaaaaatttggatgcatag 26747300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 298 - 427
Target Start/End: Original strand, 26641396 - 26641532
Alignment:
Q  298 attatggtacttcaatgcaatgtagatagcgtttcaaaccaagtatagtcacactc--cagagggagatttccacatcaaagaaagaaaatga---aaac 392  Q
    ||||||||| ||||||| ||||||||| || ||||||| |||||||||||||||||   ||||||||||||||||||||||| || ||||  |   |||     
T  26641396 attatggtatttcaatgtaatgtagattgcatttcaaaacaagtatagtcacactctatagagggagatttccacatcaaaggaaaaaaagtaaataaat 26641495  T
Q  393 atccaaa--tgtgtttgtaatgtgaggagtactagca 427  Q
    |||||||  |||||||||| |||||||||||||||||    
T  26641496 atccaaatgtgtgtttgtattgtgaggagtactagca 26641532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 298 - 427
Target Start/End: Original strand, 26747362 - 26747498
Alignment:
Q  298 attatggtacttcaatgcaatgtagatagcgtttcaaaccaagtatagtcacactc--cagagggagatttccacatcaaagaaagaaaatga---aaac 392  Q
    ||||||||| ||||||| ||||||||| || ||||||| |||||||||||||||||   ||||||||||||||||||||||| || ||||  |   |||     
T  26747362 attatggtatttcaatgtaatgtagattgcatttcaaaacaagtatagtcacactctatagagggagatttccacatcaaaggaaaaaaagtaaataaat 26747461  T
Q  393 atccaaa--tgtgtttgtaatgtgaggagtactagca 427  Q
    |||||||  |||||||||| |||||||||||||||||    
T  26747462 atccaaatgtgtgtttgtattgtgaggagtactagca 26747498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 26640893 - 26641006
Alignment:
Q  14 gaagcatggaggaggacgaggttttcaccaatccgtacggaaagagtaaatcagataaggat--cagattttctgagacacaacttgtgtagcagcaaca 111  Q
    |||| |||||||| || | | |||||| |||||| ||| || ||||||||||||||||||||  |||| ||||||||||| |||||||||||  ||||||    
T  26640893 gaagaatggaggatgatgtgattttcatcaatccttacagagagagtaaatcagataaggatatcagagtttctgagacagaacttgtgtagacgcaaca 26640992  T
Q  112 acactgtatggctc 125  Q
    ||||||||||||||    
T  26640993 acactgtatggctc 26641006  T

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Target: chr6; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 26746859 - 26746972
Alignment:
Q  14 gaagcatggaggaggacgaggttttcaccaatccgtacggaaagagtaaatcagataaggat--cagattttctgagacacaacttgtgtagcagcaaca 111  Q
    |||| |||||||| || | | |||||| |||||| ||| || ||||||||||||||||||||  |||| ||||||||||| |||||||||||  ||||||    
T  26746859 gaagaatggaggatgatgtgattttcatcaatccttacagagagagtaaatcagataaggatatcagagtttctgagacagaacttgtgtagacgcaaca 26746958  T
Q  112 acactgtatggctc 125  Q
    ||||||||||||||    
T  26746959 acactgtatggctc 26746972  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 26890864 - 26890933
Alignment:
Q  133 tatgattaaattgcctttaggaatacaagtgtttgtacatactgtgatattgaaagatggttcctcacaa 202  Q
    ||||||||| |||| |||| || |||||| ||||||||||| ||||||| ||| ||||||||| ||||||    
T  26890864 tatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaa 26890933  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 125
Target Start/End: Original strand, 26853950 - 26853982
Alignment:
Q  93 aacttgtgtagcagcaacaacactgtatggctc 125  Q
    |||||||||||||||||||||||||||||||||    
T  26853950 aacttgtgtagcagcaacaacactgtatggctc 26853982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 120
Target Start/End: Complemental strand, 27652064 - 27652025
Alignment:
Q  81 tttctgagacacaacttgtgtagcagcaacaacactgtat 120  Q
    ||||||||||| |||||| |||||||||||||||||||||    
T  27652064 tttctgagacagaacttgcgtagcagcaacaacactgtat 27652025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 27422422 - 27422372
Alignment:
Q  80 ttttctgagacacaacttgtgtagcagcaacaacactgtatggctcatgta 130  Q
    |||| ||||||| |||||| ||||||| |||||||||||||||||| ||||    
T  27422422 ttttttgagacagaacttgagtagcagaaacaacactgtatggctcttgta 27422372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 114
Target Start/End: Complemental strand, 27713875 - 27713841
Alignment:
Q  80 ttttctgagacacaacttgtgtagcagcaacaaca 114  Q
    |||||||||||| ||||||||||||||||||||||    
T  27713875 ttttctgagacagaacttgtgtagcagcaacaaca 27713841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 125
Target Start/End: Original strand, 31289527 - 31289577
Alignment:
Q  75 tcagattttctgagacacaacttgtgtagcagcaacaacactgtatggctc 125  Q
    ||||| |||| |||||| ||| |||||||||| ||||||||||||||||||    
T  31289527 tcagagtttccgagacagaacctgtgtagcagaaacaacactgtatggctc 31289577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 26631735 - 26631779
Alignment:
Q  81 tttctgagacacaacttgtgtagcagcaacaacactgtatggctc 125  Q
    |||| |||||| |||||||||||| ||||||||| ||||||||||    
T  26631735 tttccgagacagaacttgtgtagctgcaacaacattgtatggctc 26631779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 26737710 - 26737754
Alignment:
Q  81 tttctgagacacaacttgtgtagcagcaacaacactgtatggctc 125  Q
    |||| |||||| |||||||||||| ||||||||| ||||||||||    
T  26737710 tttccgagacagaacttgtgtagctgcaacaacattgtatggctc 26737754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 125
Target Start/End: Original strand, 26966392 - 26966424
Alignment:
Q  93 aacttgtgtagcagcaacaacactgtatggctc 125  Q
    |||||||||||||||||||| ||||||||||||    
T  26966392 aacttgtgtagcagcaacaaaactgtatggctc 26966424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 121
Target Start/End: Complemental strand, 27713958 - 27713930
Alignment:
Q  93 aacttgtgtagcagcaacaacactgtatg 121  Q
    |||||||||||||||||||||||||||||    
T  27713958 aacttgtgtagcagcaacaacactgtatg 27713930  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 253
Target Start/End: Complemental strand, 18682788 - 18682666
Alignment:
Q  124 tcatgtacatatgattaaattgcctttaggaatacaagtgtttgtacatactgtgatattgaaagatggttcctcacaaatcacaatctatgttcaatga 223  Q
    |||||||  |||||||||||||| |||| ||||||||| || |||||||| | | |||  || ||||||||| ||||||       ||| ||| ||||||    
T  18682788 tcatgtatgtatgattaaattgcttttaagaatacaagagtatgtacatattttcataccgatagatggttcgtcacaa-------tctctgtacaatga 18682696  T
Q  224 tgtgaacttccatttcaaaaagttggatgc 253  Q
    ||||||| | ||||||||||||||||||||    
T  18682695 tgtgaaccttcatttcaaaaagttggatgc 18682666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 29269838 - 29269792
Alignment:
Q  79 attttctgagacacaacttgtgtagcagcaacaacactgtatggctc 125  Q
    |||||||||  || |||||||||||||||||||||||||||||||||    
T  29269838 attttctgaagcagaacttgtgtagcagcaacaacactgtatggctc 29269792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 114
Target Start/End: Original strand, 18069 - 18103
Alignment:
Q  80 ttttctgagacacaacttgtgtagcagcaacaaca 114  Q
    |||||||||||| ||||||||||||||||||||||    
T  18069 ttttctgagacagaacttgtgtagcagcaacaaca 18103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 121
Target Start/End: Original strand, 17986 - 18014
Alignment:
Q  93 aacttgtgtagcagcaacaacactgtatg 121  Q
    |||||||||||||||||||||||||||||    
T  17986 aacttgtgtagcagcaacaacactgtatg 18014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 64941 - 64991
Alignment:
Q  80 ttttctgagacacaacttgtgtagcagcaacaacactgtatggctcatgta 130  Q
    |||| ||||||| |||||| ||||||| |||||||||||||||||| ||||    
T  64941 ttttttgagacagaacttgagtagcagaaacaacactgtatggctcttgta 64991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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