View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20609_low_4 (Length: 411)
Name: NF20609_low_4
Description: NF20609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20609_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 15 - 358
Target Start/End: Original strand, 50789834 - 50790165
Alignment:
| Q |
15 |
attatactagaggaactaattaagctgaaaattaaaaaggaaataacatacaaa-----agaggttaccttaagggtactccatgagagtgacaatatct |
109 |
Q |
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| T |
50789834 |
attataatagaggaactaattaagctgaaaattaaaaaggaaataacatacaaattaaaagaggttaccttaagggtactccatgagagtgacaatatct |
50789933 |
T |
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| Q |
110 |
taacgtagttagctagcatatgcagccaactgattaagcctgaatatgaaaatctgcatctacatcaaaatttacctgttcaagaaaataaagatcacat |
209 |
Q |
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| T |
50789934 |
taacgtagttagctagcatatgcagccaactgattaagcctgaatatgaaaatctgcatctacatcaaaatttacctgttcaagaaaataaagatcacat |
50790033 |
T |
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| Q |
210 |
acagagacctggtgaatgagatcacgcaagagagtgatagaattaaggttcggagtagaaatattaaagttatatatggagaggaaactcgcattgagat |
309 |
Q |
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| T |
50790034 |
acagagacctggtgaatgagatcacgcaagagagtgatagaattaaggttcggagtagaaatattagagttatatatg-----------------gagat |
50790116 |
T |
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| Q |
310 |
gtagattacaatgctcaaggactaaagtgcttaacatgtgacgatttga |
358 |
Q |
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| T |
50790117 |
gtagattacaatgctcaaggactaaagtgcttaacatgtgacaatttga |
50790165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 179 - 270
Target Start/End: Complemental strand, 16911016 - 16910925
Alignment:
| Q |
179 |
atttacctgttcaagaaaataaagatcacatacagagacctggtgaatgagatcacgcaagagagtgatagaattaaggttcggagtagaaa |
270 |
Q |
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| T |
16911016 |
atttacttcttcaagaacagaaaggtcgcatgcagagaattgatgaacgagaccacgaaagagagagatagaattaaggtttggagtagaaa |
16910925 |
T |
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