View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20609_low_5 (Length: 392)
Name: NF20609_low_5
Description: NF20609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20609_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 155 - 264
Target Start/End: Original strand, 55368860 - 55368969
Alignment:
| Q |
155 |
cggtactaattaggttctttaaattacttcgtaacaatttcagagatttgatattaaaaatgtaagttatttggtgtttaaactatacaattaaataaag |
254 |
Q |
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| T |
55368860 |
cggtactaattaggttctttaagttacttcgtaacaatttcaaagatttgatattaaaaatgtaagttattcgatgtttaaacaatacaattaaataaag |
55368959 |
T |
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| Q |
255 |
atctaggtgg |
264 |
Q |
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| T |
55368960 |
atctaagtgg |
55368969 |
T |
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Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 55368722 - 55368795
Alignment:
| Q |
13 |
aatatttcacaatggagccaaactacatcatagaatctttacgttatttaaatgtaatagattgatcatttaag |
86 |
Q |
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| T |
55368722 |
aatatttcacaatggagccaaactacatcatagaacctttactttatttaaatggaataaattgatcatttaag |
55368795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 337 - 375
Target Start/End: Original strand, 55369042 - 55369080
Alignment:
| Q |
337 |
gaccaactttttataattaaataatttaaatgaccttcg |
375 |
Q |
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| T |
55369042 |
gaccaactttttataattaaataatttaaatgaccttcg |
55369080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 42054134 - 42054090
Alignment:
| Q |
208 |
ttaaaaatgtaagttatttggtgtttaaactatacaattaaataa |
252 |
Q |
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| T |
42054134 |
ttaaaaatgtaagttttttggtgtttaaactatacaattaaataa |
42054090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 14364831 - 14364783
Alignment:
| Q |
204 |
gatattaaaaatgtaagttatttggtgtttaaactatacaattaaataa |
252 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
14364831 |
gatattaaaaatgtaagttatttggtgtttaaatttaacaattaaataa |
14364783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 620688 - 620732
Alignment:
| Q |
208 |
ttaaaaatgtaagttatttggtgtttaaactatacaattaaataa |
252 |
Q |
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| T |
620688 |
ttaaaaatgtaagttattcggtgtttaaaagttacaattaaataa |
620732 |
T |
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