View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20609_low_6 (Length: 352)
Name: NF20609_low_6
Description: NF20609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20609_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 44 - 333
Target Start/End: Original strand, 29035871 - 29036160
Alignment:
| Q |
44 |
gttaaaattaatatacatatggaacacataattaatatttctatgttcttattttatcatcaaaatttatgaccaagtgtttgaggcttgttcttgtgag |
143 |
Q |
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| T |
29035871 |
gttaaaattaatatacatatggaacacataattaatacttctatgttcttattttatcattaaaatttatgaccaagtgtttgaggcttgttcttgtgag |
29035970 |
T |
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| Q |
144 |
gtaagcaaggagcaccagtagtgaaatcagtagaatctccttctccatcttttgtgtcatcacgttgcaactgagattgattagaatctgcagtttgttg |
243 |
Q |
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| T |
29035971 |
gtaaacaaggagcaccaggagtgaaatcagtagaatctccttctccatcttttgtgtcatcacgttgcaactgagattgattagaatctgcagtttgttg |
29036070 |
T |
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| Q |
244 |
ttgttgatcactctttgaaatattttgtgcacttgaaaacaaatcaactggttcagaatctgcaatctttcctccttcaagtggtgtacc |
333 |
Q |
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| T |
29036071 |
ttgttgatcactctttgaaatattttgtgcacttgaaaacaaatcaactggttcagaatctgcaatctttcctccttcaagtggtgtacc |
29036160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 29035812 - 29035870
Alignment:
| Q |
21 |
ggtatcagaaaacacacagaaaagttaaaattaatatacatatggaacacataattaat |
79 |
Q |
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| T |
29035812 |
ggtatcagaaaacacacacaaaagttaaaattaatatacatatggaacacataattaat |
29035870 |
T |
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