View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20609_low_9 (Length: 241)

Name: NF20609_low_9
Description: NF20609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20609_low_9
NF20609_low_9
[»] chr1 (3 HSPs)
chr1 (13-221)||(38953447-38953655)
chr1 (81-213)||(47243967-47244099)
chr1 (82-190)||(30198155-30198263)
[»] chr3 (3 HSPs)
chr3 (84-224)||(25452584-25452724)
chr3 (81-221)||(48766411-48766551)
chr3 (138-214)||(17229662-17229738)
[»] chr4 (1 HSPs)
chr4 (96-214)||(48425664-48425782)
[»] chr6 (2 HSPs)
chr6 (81-221)||(11106714-11106854)
chr6 (135-208)||(3535505-3535579)
[»] chr2 (1 HSPs)
chr2 (82-221)||(40799786-40799925)
[»] chr5 (1 HSPs)
chr5 (140-221)||(13136638-13136719)
[»] chr7 (3 HSPs)
chr7 (130-224)||(22042144-22042239)
chr7 (160-221)||(14670524-14670584)
chr7 (138-221)||(27446591-27446675)


Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 38953447 - 38953655
Alignment:
Q  13 gagaccatttatcacatatttcgttactagctcatatgtgatacaattcgagcttgtgacggttttaagggaatcagattccttgctgttacagcagggt 112  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  38953447 gagaccatttatcacatatttcgttactagctcatgtgtgatacaatccgagcttgtgatggttttaagggaatcagattccttgctgttacagcagggt 38953546  T
Q  113 gatgtaaatgatccagacaattcaattttaaattgatggctgagattattttactgtgtgaaactgtgattaaatctggaccgacggatctcatatttac 212  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38953547 gatgtaaatgatccaggccattcaattttaaattgatggctgagattattttactgtgtgaaactgtgattaaatctggaccgacggatctcatatttac 38953646  T
Q  213 ggctgagat 221  Q
    |||||||||    
T  38953647 ggctgagat 38953655  T

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Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 81 - 213
Target Start/End: Original strand, 47243967 - 47244099
Alignment:
Q  81 gggaatcagattccttgctgttacagcagggtgatgtaaatgatccagacaattcaattttaaattgatggctgagattattttactgtgtgaaactgtg 180  Q
    ||||||||||||||| | ||||||||||||||| ||||| ||||| || | ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  47243967 gggaatcagattcctcgttgttacagcagggtgttgtaactgatctaggccattcaattttaaattgatggctgagattattttactgtgtgaaaccgtg 47244066  T
Q  181 attaaatctggaccgacggatctcatatttacg 213  Q
    ||||||| ||||||||| |||||||||||||||    
T  47244067 attaaatatggaccgactgatctcatatttacg 47244099  T

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Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 82 - 190
Target Start/End: Original strand, 30198155 - 30198263
Alignment:
Q  82 ggaatcagattccttgctgttacagcagggtgatgtaaatgatccagacaattcaattttaaattgatggctgagattattttactgtgtgaaactgtga 181  Q
    ||||||||||||| |||||||||||||||||| ||||| ||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30198155 ggaatcagattccctgctgttacagcagggtgctgtaactgatctaggtcattcaattttaaattgatggctgagattattttactgtgtgaaactgtga 30198254  T
Q  182 ttaaatctg 190  Q
    |||||||||    
T  30198255 ttaaatctg 30198263  T

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Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 84 - 224
Target Start/End: Original strand, 25452584 - 25452724
Alignment:
Q  84 aatcagattccttgctgttacagcagggtgatgtaaatgatccagacaattcaattttaaattgatggctgagattattttactgtgtgaaactgtgatt 183  Q
    ||||||||||| |||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25452584 aatcagattccctgctgttacagcagggtgctgtaactgatccagaccattcaattttaaattgatggctgagattattttactgtgtgaaactgtgatt 25452683  T
Q  184 aaatctggaccgacggatctcatatttacggctgagatatg 224  Q
    ||||||||||||||||||||||||| ||| | |||||||||    
T  25452684 aaatctggaccgacggatctcatatctactgttgagatatg 25452724  T

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Target: chr3; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 81 - 221
Target Start/End: Complemental strand, 48766551 - 48766411
Alignment:
Q  81 gggaatcagattccttgctgttacagcagggtgatgtaaatgatccagacaattcaattttaaattgatggctgagattattttactgtgtgaaactgtg 180  Q
    |||||||||||||| |||||||||||||||||| ||||| |||||||| | |||||||||||||||||||||||||||||||||||  ||||||| ||||    
T  48766551 gggaatcagattccctgctgttacagcagggtgctgtaactgatccaggccattcaattttaaattgatggctgagattattttacaatgtgaaattgtg 48766452  T
Q  181 attaaatctggaccgacggatctcatatttacggctgagat 221  Q
    |||||||||| ||||||||||||||||| ||||| ||||||    
T  48766451 attaaatctgaaccgacggatctcatatctacggttgagat 48766411  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 17229662 - 17229738
Alignment:
Q  138 ttttaaattgatggctgagattattttactgtgtgaaactgtgattaaatctggaccgacggatctcatatttacgg 214  Q
    |||||||||||||| ||| ||||||||||||||| | |||||||||||||||||||||| ||||||||||| |||||    
T  17229662 ttttaaattgatggttgaaattattttactgtgtaagactgtgattaaatctggaccgatggatctcatatctacgg 17229738  T

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Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 48425664 - 48425782
Alignment:
Q  96 tgctgttacagcagggtgatgtaaatgatccagacaattcaattttaaattgatggctgagattattttactgtgtgaaactgtgattaaatctggaccg 195  Q
    |||||||||||||||||| ||||| ||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  48425664 tgctgttacagcagggtgctgtaattgatccaaaccattctattttaaattgatggctgagattattttactgtgtgaaactgtgattagatctgaaccg 48425763  T
Q  196 acggatctcatatttacgg 214  Q
    ||||||||||||| |||||    
T  48425764 acggatctcatatctacgg 48425782  T

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Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 81 - 221
Target Start/End: Original strand, 11106714 - 11106854
Alignment:
Q  81 gggaatcagattccttgctgttacagcagggtgatgtaaatgatccagacaattcaattttaaattgatggctgagattattttactgtgtgaaactgtg 180  Q
    |||||||||||||| || || ||||| |||||| |||||||||| ||| | ||| |||||||||||||||| ||||||||||||| ||||||||| ||||    
T  11106714 gggaatcagattccctgttgatacagtagggtgttgtaaatgattcaggccatttaattttaaattgatggttgagattattttattgtgtgaaattgtg 11106813  T
Q  181 attaaatctggaccgacggatctcatatttacggctgagat 221  Q
    |||||||||||| ||||| || |||||| ||||| ||||||    
T  11106814 attaaatctggatcgacgaatgtcatatctacggttgagat 11106854  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 3535505 - 3535579
Alignment:
Q  135 caattttaaattgatggctgagattattttactgtgtgaaactgtgatt-aaatctggaccgacggatctcatat 208  Q
    ||||||||||||||| || ||||| |||| ||||| ||||||||||||| ||| |||||||||| ||||||||||    
T  3535505 caattttaaattgattgccgagatcatttcactgtatgaaactgtgattaaaaactggaccgaccgatctcatat 3535579  T

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Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 82 - 221
Target Start/End: Original strand, 40799786 - 40799925
Alignment:
Q  82 ggaatcagattccttgctgttacagcagggtgatgtaaatgatccagacaattcaattttaaattgatggctgagattattttactgtgtgaaactgtga 181  Q
    ||||||||||||| || ||||||| ||||||| ||||| | |||||| | |||||||||||||||||||| |||||| |||||||| ||||||||| |||    
T  40799786 ggaatcagattccctgttgttacatcagggtgctgtaactaatccaggccattcaattttaaattgatggatgagatcattttactttgtgaaactttga 40799885  T
Q  182 ttaaatctggaccgacggatctcatatttacggctgagat 221  Q
    |||||||||||||||| ||  |||||| ||||| ||||||    
T  40799886 ttaaatctggaccgactgaattcatatctacggttgagat 40799925  T

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Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 140 - 221
Target Start/End: Original strand, 13136638 - 13136719
Alignment:
Q  140 ttaaattgatggctgagattattttactgtgtgaaactgtgattaaatctggaccgacggatctcatatttacggctgagat 221  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  13136638 ttaaattgatggctgagattatattactgtgtaaaactgtgattaaatctggaccgacggatctcatatctacggttgagat 13136719  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 22042239 - 22042144
Alignment:
Q  130 caattcaattttaaattgatggctgagattattttactgtgtgaaactgtgatt-aaatctggaccgacggatctcatatttacggctgagatatg 224  Q
    ||||||||||||||||||||| |||| || |||||||||||| ||||||||||| ||||||| |||||  |||||||||| ||||  |||||||||    
T  22042239 caattcaattttaaattgatgactgaaatcattttactgtgtaaaactgtgattaaaatctgaaccgatcgatctcatatctacgattgagatatg 22042144  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 14670524 - 14670584
Alignment:
Q  160 attttactgtgtgaaactgtgattaaatctggaccgacggatctcatatttacggctgagat 221  Q
    |||||||||||||||||||||||||| ||| ||||||| |||||||||| ||| | ||||||    
T  14670524 attttactgtgtgaaactgtgattaagtct-gaccgacagatctcatatctacagttgagat 14670584  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 221
Target Start/End: Complemental strand, 27446675 - 27446591
Alignment:
Q  138 ttttaaattgatggctgagattattttactgtgtgaaactgtgattaaa-tctggaccgacggatctcatatttacggctgagat 221  Q
    ||||||||| |||||||| || |||||| | || |||||| |||||||| ||| |||||||  || | |||||||||||||||||    
T  27446675 ttttaaattaatggctgaaatcattttattatgcgaaactatgattaaaatctagaccgaccaattttatatttacggctgagat 27446591  T

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