View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2060_high_23 (Length: 228)
Name: NF2060_high_23
Description: NF2060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2060_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 31101255 - 31101044
Alignment:
| Q |
1 |
tccacttagtgtacaaaagaaaaaatcaaggccttttaaactcctcaatgtgtacatttcttgagggatggaaccaataataggattttttgaaaaattc |
100 |
Q |
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| T |
31101255 |
tccacttagtgtacaaaagaaaaaatcaaggccttttaaactcctcaatgtgtacatttcttgagggatggaaccaataataggattttttgaaaaattc |
31101156 |
T |
|
| Q |
101 |
aatgtatttattcttgacaagttacctatttgtggaggaatggttccataaaagtggttgttatagatatttagggttatgaggttggggaatgaagaga |
200 |
Q |
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| T |
31101155 |
aatgtatttattcttgacaagttacctatttgtggaggaatggttccataaaagtggttgttatagatatttagggttatgaggttggggaatgaagaga |
31101056 |
T |
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| Q |
201 |
aggtgagagagt |
212 |
Q |
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|||||||||||| |
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| T |
31101055 |
aggtgagagagt |
31101044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 22 - 201
Target Start/End: Complemental strand, 31214015 - 31213836
Alignment:
| Q |
22 |
aaaatcaaggccttttaaactcctcaatgtgtacatttcttgagggatggaaccaataataggattttttgaaaaattcaatgtatttattcttgacaag |
121 |
Q |
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|||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31214015 |
aaaatcaaggccttttaaactcctcagtgtccacatttctatagggatggaaccaataataggattttttgaaaaattcaatgtatttattcttgacaag |
31213916 |
T |
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| Q |
122 |
ttacctatttgtggaggaatggttccataaaagtggttgttatagatatttagggttatgaggttggggaatgaagagaa |
201 |
Q |
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||||||||||||||||||||||| |||||||||| |||||| ||||||||||| | | ||||||||||||||| ||||| |
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| T |
31213915 |
ttacctatttgtggaggaatggtcccataaaagttgttgttgaagatatttaggatgaggaggttggggaatgatgagaa |
31213836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 54 - 212
Target Start/End: Complemental strand, 31182294 - 31182136
Alignment:
| Q |
54 |
acatttcttgagggatggaaccaataataggattttttgaaaaattcaatgtatttattcttgacaagttacctatttgtggaggaatggttccataaaa |
153 |
Q |
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||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||| |||| | |||||| |||||||||||||||||||||||||| |
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| T |
31182294 |
acatttcttgagggatggaaccatcaataggatttcgagaaaaattcaatgaatttatttttgagaggttaccaatttgtggaggaatggttccataaaa |
31182195 |
T |
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| Q |
154 |
gtggttgttatagatatttagggttatgaggttggggaatgaagagaaggtgagagagt |
212 |
Q |
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|| ||| | |||||||||||||||| ||||||| | ||||||||| || |||||||||| |
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| T |
31182194 |
gttgttatcatagatatttagggttgtgaggtttgtgaatgaagaaaatgtgagagagt |
31182136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 31138632 - 31138421
Alignment:
| Q |
1 |
tccacttagtgtacaaaagaaaaaatcaaggccttttaaactcctcaatgtgtacatttcttgagggatggaaccaataataggattttttgaaaaattc |
100 |
Q |
| |
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|||||||||| |||||||| ||||||||| || |||||| | |||||| ||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
31138632 |
tccacttagtttacaaaaggaaaaatcaatattttgtaaactttttaatgtgaacatttcttgagggatggaaccatcaataggatttagagaaaaattc |
31138533 |
T |
|
| Q |
101 |
aatgtatttattcttgacaagttacctatttgtggaggaatggttccataaaagtggttgttatagatatttagggttatgaggttggggaatgaagaga |
200 |
Q |
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|||||||||||| |||| | |||||| |||||||| ||||||||||||||||||| ||| || || || ||||| ||| ||| || | ||||||||| | |
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| T |
31138532 |
aatgtatttatttttgagatgttaccaatttgtgggggaatggttccataaaagtagttattgtaaatgtttagtgtttggagatttgagaatgaagaaa |
31138433 |
T |
|
| Q |
201 |
aggtgagagagt |
212 |
Q |
| |
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| |||||||||| |
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|
| T |
31138432 |
aagtgagagagt |
31138421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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