View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2060_high_3 (Length: 517)
Name: NF2060_high_3
Description: NF2060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2060_high_3 |
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| [»] scaffold0208 (1 HSPs) |
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| [»] scaffold0581 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 16 - 506
Target Start/End: Complemental strand, 35632522 - 35632034
Alignment:
| Q |
16 |
atatggacatccaggctgctgctctgggacacgacaatgtgagcaggaggtcttttcatgatgatataagtgtcattgttgtgttcttggacaaaaagtt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
35632522 |
atatggacatccaggctgctgctctgggacacgacaatatgagcaggaggtcttttcatgatgatataagtgtcattgttttgttcttggccaaaaagtt |
35632423 |
T |
|
| Q |
116 |
gtttttgaggcggcacgtacataatttgtcctacatatgctcatctgacacgcctctataccaccggattttgcaaggtctggattatttgcttcaaggc |
215 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||| | ||||||||| ||||||||||| |||||||||| | |
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| T |
35632422 |
gtttctgaggcggcgcgtacataatttgtcctacatatgctcatttgacacgcctctg--ccatctgattttgcacggtctggattaattgcttcaagac |
35632325 |
T |
|
| Q |
216 |
tgaaggatcatatcaaaaagcggtttaaattaggttcattgaatgcatctagctctcaggctcagggccctcagactcttctgtctcagaacactcaaac |
315 |
Q |
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|
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |||| |||||||||||||||| |
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| T |
35632324 |
tgaaggattgtatcaaaaagcggtttaaattaggttcattgcatgcatctagctctcagattcagggccctcggactcctctggctcagaacactcaaac |
35632225 |
T |
|
| Q |
316 |
ccctgtggccgagggttcacagactcagagatgtttgggtcagagttctcaggctcagagccgttgggagaatgttaaacttcgggtttcaccgaaacgg |
415 |
Q |
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|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
35632224 |
ccctgtggtcgagggttcacagactcagagacgtttgggtcagagttctcaggctcagagccgttaggagaatgttaaactgcgggtttcaccgaaacgg |
35632125 |
T |
|
| Q |
416 |
cactcaatataaatttaaatttagaatgtaaactgttctaacttatttcagccattgagatctgttaactctattggttggatgtttttct |
506 |
Q |
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|| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35632124 |
cattcgatataaatttcaatttagaatgtaaactgttctaacttatttcagccattgagatctgttaactctattggttggatgtttttct |
35632034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 59 - 165
Target Start/End: Complemental strand, 35629314 - 35629208
Alignment:
| Q |
59 |
caggaggtcttttcatgatgatataagtgtcattgttgtgttcttggacaaaaagttgtttttgaggcggcacgtacataatttgtcctacatatgctca |
158 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||| ||||||| || |||| ||||| || |||||||||||||||||||| | ||||| |
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| T |
35629314 |
caggaggtcttttcatgatgatataagtgtgattgttgtgttctttgacaaaacgtcgtttctgaggatgcccgtacataatttgtcctacaaaagctca |
35629215 |
T |
|
| Q |
159 |
tctgaca |
165 |
Q |
| |
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||||||| |
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|
| T |
35629214 |
tctgaca |
35629208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 59 - 162
Target Start/End: Complemental strand, 35635734 - 35635631
Alignment:
| Q |
59 |
caggaggtcttttcatgatgatataagtgtcattgttgtgttcttggacaaaaagttgtttttgaggcggcacgtacataatttgtcctacatatgctca |
158 |
Q |
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|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| | || ||||| || | |||||||||||||||||| | ||||| |
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| T |
35635734 |
caggaggtattttcatgatgatataagtgtgattgttgtgttcttggacaaaaagtcgattctgaggatgcccctacataatttgtcctacaaaagctca |
35635635 |
T |
|
| Q |
159 |
tctg |
162 |
Q |
| |
|
|||| |
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|
| T |
35635634 |
tctg |
35635631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 54 - 125
Target Start/End: Complemental strand, 35634333 - 35634262
Alignment:
| Q |
54 |
gtgagcaggaggtcttttcatgatgatataagtgtcattgttgtgttcttggacaaaaagttgtttttgagg |
125 |
Q |
| |
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||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||| | |||| ||||| |
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| T |
35634333 |
gtgagcaggaggtcttttcgtgatgatataagtgtgattgttgtgttctttgacaaaaattcgtttctgagg |
35634262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 448 - 513
Target Start/End: Complemental strand, 35635418 - 35635353
Alignment:
| Q |
448 |
ctgttctaacttatttcagccattgagatctgttaactctattggttggatgtttttcttctcact |
513 |
Q |
| |
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||||| |||||| |||| |||||||||| |||||||||||||||||| ||||||||||| ||||| |
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| T |
35635418 |
ctgttataacttccttcaaccattgagatttgttaactctattggttgaatgtttttcttttcact |
35635353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 448 - 507
Target Start/End: Complemental strand, 10571739 - 10571680
Alignment:
| Q |
448 |
ctgttctaacttatttcagccattgagatctgttaactctattggttggatgtttttctt |
507 |
Q |
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||||| |||||| |||| |||||||||| |||||||||||||||||| ||||||||||| |
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| T |
10571739 |
ctgttataacttccttcaaccattgagatttgttaactctattggttgaatgtttttctt |
10571680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 27 - 170
Target Start/End: Original strand, 10299506 - 10299649
Alignment:
| Q |
27 |
caggctgctgctctgggacacgacaatgtgagcaggaggtcttttcatgatgatataagtgtcattgttgtgttcttggacaaaaagttgtttttgaggc |
126 |
Q |
| |
|
||||| |||||| ||||| | ||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||| || |||| ||||| |
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| T |
10299506 |
caggccgctgctacgggacgcaacaatgtgagccggaggtcttttcatgatgatataagtgtgattgtggtgttcttggacaaaacgtcgtttccgaggc |
10299605 |
T |
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| Q |
127 |
ggcacgtacataatttgtcctacatatgctcatctgacacgcct |
170 |
Q |
| |
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|| |||| |||||||||||||| | |||||||||||| |||| |
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| T |
10299606 |
agcctgtacttaatttgtcctacacaggctcatctgacatgcct |
10299649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 27 - 170
Target Start/End: Original strand, 10319938 - 10320081
Alignment:
| Q |
27 |
caggctgctgctctgggacacgacaatgtgagcaggaggtcttttcatgatgatataagtgtcattgttgtgttcttggacaaaaagttgtttttgaggc |
126 |
Q |
| |
|
||||| |||||| ||||| | ||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||| || |||| ||||| |
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| T |
10319938 |
caggccgctgctacgggacgcaacaatgtgagccggaggtcttttcatgatgatataagtgtgattgtggtgttcttggacaaaacgtcgtttccgaggc |
10320037 |
T |
|
| Q |
127 |
ggcacgtacataatttgtcctacatatgctcatctgacacgcct |
170 |
Q |
| |
|
|| |||| |||||||||||||| | |||||||||||| |||| |
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|
| T |
10320038 |
agcctgtacttaatttgtcctacacaggctcatctgacaggcct |
10320081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 27 - 170
Target Start/End: Original strand, 10337054 - 10337197
Alignment:
| Q |
27 |
caggctgctgctctgggacacgacaatgtgagcaggaggtcttttcatgatgatataagtgtcattgttgtgttcttggacaaaaagttgtttttgaggc |
126 |
Q |
| |
|
||||| |||||| ||||| | ||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||| || |||| ||||| |
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|
| T |
10337054 |
caggccgctgctacgggacgcaacaatgtgagccggaggtcttttcatgatgatataagtgtgattgtggtgttcttggacaaaacgtcgtttccgaggc |
10337153 |
T |
|
| Q |
127 |
ggcacgtacataatttgtcctacatatgctcatctgacacgcct |
170 |
Q |
| |
|
|| |||| |||||||||||||| | |||||||||||| |||| |
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|
| T |
10337154 |
agcctgtacttaatttgtcctacacaggctcatctgacaggcct |
10337197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 448 - 513
Target Start/End: Original strand, 15270 - 15335
Alignment:
| Q |
448 |
ctgttctaacttatttcagccattgagatctgttaactctattggttggatgtttttcttctcact |
513 |
Q |
| |
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||||| |||||| |||| |||||||||| |||||||||||||||||| ||||||||||| ||||| |
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|
| T |
15270 |
ctgttataacttccttcaaccattgagatttgttaactctattggttgaatgtttttcttttcact |
15335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0581 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0581
Description:
Target: scaffold0581; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 468 - 513
Target Start/End: Complemental strand, 2696 - 2651
Alignment:
| Q |
468 |
cattgagatctgttaactctattggttggatgtttttcttctcact |
513 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||| ||| ||||| |
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|
| T |
2696 |
cattgagatttgttaactctattggttgaatgttttacttttcact |
2651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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