View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2060_high_5 (Length: 453)
Name: NF2060_high_5
Description: NF2060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2060_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Complemental strand, 55993579 - 55993146
Alignment:
| Q |
18 |
aacaataacaattacaactaccattaaatttgaaattcaacgttagaaactaatgtgtttacagattaattagaaagaaaatatagagtaatagttatag |
117 |
Q |
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| T |
55993579 |
aacattaacaattacaactaccattaaatttgaaattcaacgttagaaactaatgtgtttacagattaattagaaagaaaatatagagtaatagttatag |
55993480 |
T |
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| Q |
118 |
gctataaatcaatatcaacaatacattattgaaatagtataatatcgattgaaattttaaaaggaacaagaagaagtagtgtaagagaacgattggatat |
217 |
Q |
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| T |
55993479 |
gctataaatcaatatcaacaatacattattgaaatagtataatatcgattgaaattttaaaaggaacaagaagaagtagtgtaagaaaacgattggatat |
55993380 |
T |
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| Q |
218 |
acctgacaaggttgttcaaatttcgtttcgttcaattaaacatgaagaaga----------cattgaggaagttcagaaatcatccataaaaacaggcaa |
307 |
Q |
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| T |
55993379 |
acctgacaaggttgttcaaatttcgtttcgttcaattaaccatgaagaagaagacgttgtcgattgaggaagttcagaaatcatccataaatacaggcaa |
55993280 |
T |
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| Q |
308 |
taatgtctccgatgcttccaaatggccattctaaaaaccttaaaatgtttaagattgattgattatcacannnnnnngtcgtggtggacgatccaatgac |
407 |
Q |
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| T |
55993279 |
taatgtctccgatgcttccaaatggccattctaaaaaccttaaaatgtttaagattgattgattatcaca-ttttttgtcgtggtggacgatccaatgac |
55993181 |
T |
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| Q |
408 |
tcagattttactagtgttatctctcaattgttcat |
442 |
Q |
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| T |
55993180 |
tcagattttactagtgttatctctcaattgttcat |
55993146 |
T |
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