View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2060_high_8 (Length: 387)
Name: NF2060_high_8
Description: NF2060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2060_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 15 - 369
Target Start/End: Original strand, 37975280 - 37975632
Alignment:
| Q |
15 |
aacccaaaaaccaccgcacttaacactctactgtagaagttaagcaactcatagttgagggtcaacgtttctccctcgctgtcaattgcttgaaacaaag |
114 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||| || |||||||| ||||||||||||| |
|
|
| T |
37975280 |
aacccaaaaaccaccgtacttaacactctattgtagaagttaagcaactcatagttgagggacaatgtttctccttcactgtcaatcgcttgaaacaaag |
37975379 |
T |
|
| Q |
115 |
agagtcacaattgaaaaaacttaaccgacttcagctaaggctcttaaccaaccaagatataatttttgcacatattttcaaagctagatatttttacata |
214 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37975380 |
agagtcacaattgaaaaaacttaaccgatttcagctaaggcttttaaccaaccaagatatgatttttgcacatattttcaaagctagatatttttacata |
37975479 |
T |
|
| Q |
215 |
gtctccatgcattacaggtggaaatataaaatttggggtgaacactagttgagatgtatgtacttaactctcatattactatcccaataccacaagagag |
314 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
37975480 |
gtctccatgcatcacaggtggaaatataaaatttggggtgaaccttagttgagatgtatgga--aaactctcatattactatcccaataccacaagagag |
37975577 |
T |
|
| Q |
315 |
tgagaatttccaattatctgatttgcttgattaagatacgcaaagttagacatgg |
369 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37975578 |
tgagaatttccaattatccgatttgcttgattaagatacgcaaagttagacatgg |
37975632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University