View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2060_low_11 (Length: 362)

Name: NF2060_low_11
Description: NF2060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2060_low_11
NF2060_low_11
[»] chr6 (14 HSPs)
chr6 (155-346)||(21936408-21936599)
chr6 (157-299)||(12909533-12909675)
chr6 (157-299)||(12934640-12934782)
chr6 (218-343)||(11183031-11183156)
chr6 (220-332)||(21937871-21937983)
chr6 (237-346)||(24508664-24508773)
chr6 (217-346)||(20751922-20752051)
chr6 (259-336)||(21936571-21936648)
chr6 (155-211)||(21276120-21276176)
chr6 (259-343)||(24508745-24508829)
chr6 (290-343)||(21937801-21937854)
chr6 (155-211)||(20751881-20751936)
chr6 (259-343)||(20752023-20752107)
chr6 (211-260)||(21276091-21276140)
[»] chr1 (26 HSPs)
chr1 (161-342)||(19311049-19311230)
chr1 (168-343)||(1188046-1188221)
chr1 (157-343)||(13654544-13654730)
chr1 (168-343)||(10185924-10186099)
chr1 (157-343)||(35653036-35653222)
chr1 (155-326)||(1188218-1188389)
chr1 (159-343)||(10186307-10186491)
chr1 (156-260)||(17414304-17414408)
chr1 (259-343)||(10186466-10186550)
chr1 (255-341)||(43358980-43359065)
chr1 (172-301)||(44523889-44524017)
chr1 (211-343)||(16051420-16051552)
chr1 (259-343)||(21431566-21431650)
chr1 (155-242)||(21430777-21430863)
chr1 (154-252)||(3696110-3696208)
chr1 (155-211)||(28574644-28574700)
chr1 (155-326)||(35626430-35626591)
chr1 (154-211)||(3468415-3468472)
chr1 (211-260)||(43359120-43359169)
chr1 (154-211)||(43359149-43359206)
chr1 (155-211)||(28598656-28598712)
chr1 (261-346)||(21431509-21431594)
chr1 (155-209)||(16051534-16051588)
chr1 (259-323)||(10185885-10185949)
chr1 (211-260)||(28574615-28574664)
chr1 (211-260)||(28598627-28598676)
[»] chr4 (27 HSPs)
chr4 (155-343)||(47071626-47071814)
chr4 (155-346)||(14643526-14643717)
chr4 (155-343)||(22118942-22119130)
chr4 (153-343)||(30019636-30019817)
chr4 (219-343)||(54859022-54859146)
chr4 (153-284)||(34601823-34601954)
chr4 (155-260)||(3409329-3409434)
chr4 (214-343)||(25618089-25618217)
chr4 (259-341)||(3409493-3409575)
chr4 (255-341)||(32429174-32429260)
chr4 (159-260)||(18716858-18716958)
chr4 (226-346)||(34279305-34279426)
chr4 (159-260)||(18737531-18737634)
chr4 (255-325)||(25618188-25618258)
chr4 (155-211)||(35091262-35091318)
chr4 (153-211)||(35096375-35096433)
chr4 (155-211)||(3424114-3424170)
chr4 (155-211)||(32429034-32429090)
chr4 (259-332)||(3424257-3424330)
chr4 (211-260)||(32429070-32429119)
chr4 (155-200)||(34279254-34279299)
chr4 (259-332)||(34279398-34279471)
chr4 (259-343)||(18671065-18671149)
chr4 (211-270)||(34128159-34128218)
chr4 (211-260)||(35091233-35091282)
chr4 (271-343)||(18716715-18716787)
chr4 (271-343)||(18737388-18737460)
[»] scaffold0005 (1 HSPs)
scaffold0005 (155-346)||(173575-173766)
[»] scaffold0006 (1 HSPs)
scaffold0006 (157-343)||(144305-144491)
[»] chr5 (19 HSPs)
chr5 (153-346)||(35368621-35368814)
chr5 (155-343)||(43540564-43540751)
chr5 (211-341)||(13556141-13556271)
chr5 (155-260)||(2024362-2024467)
chr5 (155-211)||(9872225-9872281)
chr5 (155-211)||(9877340-9877396)
chr5 (155-210)||(39909306-39909361)
chr5 (259-341)||(2023190-2023272)
chr5 (155-253)||(4555920-4556018)
chr5 (155-211)||(39904192-39904248)
chr5 (155-211)||(13556105-13556161)
chr5 (211-255)||(24091825-24091869)
chr5 (270-313)||(35368797-35368840)
chr5 (275-341)||(43379620-43379686)
chr5 (101-147)||(42688407-42688453)
chr5 (211-260)||(9872261-9872310)
chr5 (211-260)||(9877376-9877425)
chr5 (160-209)||(24091794-24091843)
chr5 (211-260)||(39904163-39904212)
[»] chr3 (38 HSPs)
chr3 (155-346)||(29827694-29827885)
chr3 (155-260)||(18023914-18024020)
chr3 (152-211)||(6852750-6852809)
chr3 (152-211)||(10584656-10584715)
chr3 (152-211)||(33702397-33702456)
chr3 (153-211)||(8465097-8465155)
chr3 (255-341)||(49784723-49784809)
chr3 (155-211)||(4050155-4050211)
chr3 (155-211)||(4055289-4055345)
chr3 (155-211)||(5481289-5481345)
chr3 (155-211)||(6857856-6857912)
chr3 (155-211)||(10672739-10672795)
chr3 (155-211)||(10677852-10677908)
chr3 (152-211)||(1302042-1302101)
chr3 (155-209)||(269526-269580)
chr3 (157-211)||(20891496-20891550)
chr3 (155-211)||(8458659-8458715)
chr3 (159-211)||(10591100-10591152)
chr3 (155-211)||(31076201-31076257)
chr3 (155-211)||(31081308-31081364)
chr3 (152-211)||(49784893-49784952)
chr3 (255-341)||(29827640-29827726)
chr3 (152-211)||(5457814-5457868)
chr3 (157-260)||(18023324-18023427)
chr3 (153-229)||(31018015-31018090)
chr3 (259-301)||(20891354-20891396)
chr3 (211-253)||(20891474-20891516)
chr3 (211-260)||(4050126-4050175)
chr3 (211-260)||(4055260-4055309)
chr3 (211-260)||(5481325-5481374)
chr3 (211-260)||(6852789-6852838)
chr3 (211-260)||(6857892-6857941)
chr3 (211-260)||(8465068-8465117)
chr3 (211-260)||(10584695-10584744)
chr3 (211-260)||(10591132-10591181)
chr3 (211-260)||(10672775-10672824)
chr3 (211-260)||(10677888-10677937)
chr3 (211-260)||(49784864-49784913)
[»] chr2 (15 HSPs)
chr2 (155-343)||(42780408-42780596)
chr2 (217-346)||(716545-716674)
chr2 (168-262)||(20892111-20892205)
chr2 (155-211)||(14917183-14917239)
chr2 (155-211)||(17720000-17720056)
chr2 (155-211)||(45120734-45120790)
chr2 (36-155)||(23481924-23482042)
chr2 (153-211)||(30283249-30283307)
chr2 (155-211)||(17720327-17720383)
chr2 (155-211)||(39178946-39179002)
chr2 (259-326)||(716506-716573)
chr2 (280-325)||(20892197-20892242)
chr2 (256-343)||(20892232-20892319)
chr2 (211-260)||(14917219-14917268)
chr2 (211-260)||(17720363-17720412)
[»] chr8 (22 HSPs)
chr8 (1-155)||(15207147-15207301)
chr8 (158-343)||(18608435-18608619)
chr8 (1-155)||(15201390-15201542)
chr8 (213-341)||(43956689-43956817)
chr8 (154-260)||(10340697-10340803)
chr8 (155-310)||(1782083-1782237)
chr8 (155-209)||(14314712-14314766)
chr8 (154-211)||(43956650-43956707)
chr8 (155-211)||(14318416-14318472)
chr8 (155-211)||(26981676-26981732)
chr8 (155-211)||(26986790-26986846)
chr8 (155-211)||(34108578-34108634)
chr8 (155-211)||(18493978-18494034)
chr8 (271-346)||(25953012-25953087)
chr8 (290-341)||(10340883-10340934)
chr8 (194-257)||(25952305-25952368)
chr8 (211-260)||(14318452-14318501)
chr8 (211-260)||(18494014-18494063)
chr8 (271-343)||(25953071-25953144)
chr8 (211-260)||(26981712-26981761)
chr8 (211-260)||(26986826-26986875)
chr8 (211-260)||(34108549-34108598)
[»] chr7 (18 HSPs)
chr7 (155-284)||(37459703-37459832)
chr7 (155-232)||(2248853-2248930)
chr7 (155-211)||(12852023-12852079)
chr7 (155-211)||(12857136-12857192)
chr7 (155-211)||(26051368-26051424)
chr7 (155-211)||(26056481-26056537)
chr7 (155-211)||(26060727-26060783)
chr7 (155-211)||(26065840-26065896)
chr7 (155-209)||(4181276-4181330)
chr7 (154-200)||(35352120-35352166)
chr7 (211-260)||(12857107-12857156)
chr7 (211-260)||(14610647-14610696)
chr7 (211-260)||(26051339-26051388)
chr7 (211-260)||(26056452-26056501)
chr7 (211-260)||(26060698-26060747)
chr7 (211-260)||(26065811-26065860)
chr7 (290-343)||(35352236-35352289)
chr7 (241-301)||(4181329-4181389)
[»] scaffold0223 (1 HSPs)
scaffold0223 (155-211)||(1820-1876)


Alignment Details
Target: chr6 (Bit Score: 144; Significance: 1e-75; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 155 - 346
Target Start/End: Original strand, 21936408 - 21936599
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattgg 254  Q
    |||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||| |    
T  21936408 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcaccaagagttgtaactctttatggaaatcttttatatacatttg 21936507  T
Q  255 aacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaacctta 346  Q
    ||| ||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  21936508 aacctttggcaaatgggtgcttaatgaacctttgcattgattcaagtttatatgatcatgacctttggcaaaggggtgtttagtgaacctta 21936599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 157 - 299
Target Start/End: Complemental strand, 12909675 - 12909533
Alignment:
Q  157 ttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattggaa 256  Q
    ||||||||||  ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||    
T  12909675 ttggtgatttctaaaataatggaatcactttagaaccaaaagttgtaactcttcaccaagagttgtaacttttcatgagaatcattcatatacattggaa 12909576  T
Q  257 catttggcaaaagggtgcttaatgaacctttgaattgattcaa 299  Q
    | |||||||||| |||| |||||||||||| | ||||||||||    
T  12909575 cctttggcaaaaaggtgtttaatgaaccttagcattgattcaa 12909533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 157 - 299
Target Start/End: Complemental strand, 12934782 - 12934640
Alignment:
Q  157 ttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattggaa 256  Q
    |||||||||| |||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||    
T  12934782 ttggtgatttccaaaataatggaatcactctagaaccaaaagttgtaactcttcaccaagagttgtaacttttcatgagaatcattcatatacattggaa 12934683  T
Q  257 catttggcaaaagggtgcttaatgaacctttgaattgattcaa 299  Q
    | |||||||||| |||| |||||||||||| | ||||||||||    
T  12934682 cctttggcaaaaaggtgtttaatgaaccttagcattgattcaa 12934640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 218 - 343
Target Start/End: Original strand, 11183031 - 11183156
Alignment:
Q  218 gttgtaactcttcatgagaatcttttatatacattggaacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacc 317  Q
    ||||||||||||||||  ||||||| |||||||||||||||||||||||| |||| ||||||||||||| |  ||||||||||||||||||||||| |||    
T  11183031 gttgtaactcttcatggaaatctttcatatacattggaacatttggcaaaggggtacttaatgaaccttagccttgattcaagtgtatatgatcataacc 11183130  T
Q  318 tttggcaaaggggtgcttagtgaacc 343  Q
    |||| ||||||| || ||| ||||||    
T  11183131 tttgacaaagggatgtttaatgaacc 11183156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 220 - 332
Target Start/End: Complemental strand, 21937983 - 21937871
Alignment:
Q  220 tgtaactcttcatgagaatcttttatatacattggaacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctt 319  Q
    ||||||||||||||| ||| |||  ||||||||||||||||| ||||| ||||| ||||||||| |||| ||||||||||||||||||||||||||||||    
T  21937983 tgtaactcttcatgaaaatatttcgtatacattggaacatttagcaaaggggtggttaatgaacatttgcattgattcaagtgtatatgatcatgacctt 21937884  T
Q  320 tggcaaaggggtg 332  Q
    ||| |||||||||    
T  21937883 tggaaaaggggtg 21937871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 237 - 346
Target Start/End: Original strand, 24508664 - 24508773
Alignment:
Q  237 atcttttatatacattggaacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgctta 336  Q
    |||||| ||||| |||| ||||||||| ||| ||| ||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||    
T  24508664 atctttcatatatattgaaacatttggtaaatgggcgcttaataaacctttgcattgattcaagtgtatatgatcatgacctttggtaaaggggtgttta 24508763  T
Q  337 gtgaacctta 346  Q
     |||||||||    
T  24508764 atgaacctta 24508773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 217 - 346
Target Start/End: Original strand, 20751922 - 20752051
Alignment:
Q  217 agttgtaactcttcatgagaatcttttatatacattggaacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgac 316  Q
    ||||||||||||||||||||| |||| |||||||||  ||| ||| ||||| ||||||||||| |||||| | |||| ||||||||||||| || || ||    
T  20751922 agttgtaactcttcatgagaacctttcatatacattataacctttagcaaatgggtgcttaataaaccttagcattggttcaagtgtatattattataac 20752021  T
Q  317 ctttggcaaaggggtgcttagtgaacctta 346  Q
    ||||| |||||||||| ||| |||||||||    
T  20752022 ctttgacaaaggggtgtttaatgaacctta 20752051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 259 - 336
Target Start/End: Original strand, 21936571 - 21936648
Alignment:
Q  259 tttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgctta 336  Q
    ||||||||| ||||| ||| |||||||| ||||| |||||||||||||||||||| ||||||||||||  ||||||||    
T  21936571 tttggcaaaggggtgtttagtgaaccttagaatttattcaagtgtatatgatcataacctttggcaaaaaggtgctta 21936648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 21276176 - 21276120
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  21276176 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 21276120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 259 - 343
Target Start/End: Original strand, 24508745 - 24508829
Alignment:
Q  259 tttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaacc 343  Q
    ||||| ||| ||||| |||||||||||| | ||| ||||||||||||| |||||| |||||||||||| ||||||||| ||||||    
T  24508745 tttggtaaaggggtgtttaatgaaccttagcattaattcaagtgtataagatcataacctttggcaaaagggtgcttaatgaacc 24508829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 290 - 343
Target Start/End: Complemental strand, 21937854 - 21937801
Alignment:
Q  290 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaacc 343  Q
    |||||||||||||||||||||||| |||||||||||| ||||| ||| ||||||    
T  21937854 attgattcaagtgtatatgatcataacctttggcaaaagggtgtttaatgaacc 21937801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 20751881 - 20751936
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| |||||||||||| | ||||||| |||||||||||||||||||||    
T  20751881 tgttggtgatttccaaaataatggattcactttag-atcaaaagttgtaactcttca 20751936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 343
Target Start/End: Original strand, 20752023 - 20752107
Alignment:
Q  259 tttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaacc 343  Q
    |||| |||| ||||| |||||||||||| | |||||||||||||||||||  ||| ||||||| ||||  |||||||| ||||||    
T  20752023 tttgacaaaggggtgtttaatgaaccttagcattgattcaagtgtatatggccataacctttgacaaaatggtgcttaatgaacc 20752107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 21276140 - 21276091
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 260  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  21276140 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 21276091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 161 - 342
Target Start/End: Complemental strand, 19311230 - 19311049
Alignment:
Q  161 tgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattggaacatt 260  Q
    |||||| |||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||    
T  19311230 tgatttccaaaataatggaatcactttataaccaaaagttgtaactcttcaccaagagttgtaactcttcatgggaatctttcatatacattggaacctt 19311131  T
Q  261 tggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaac 342  Q
    ||||||| |||||| ||||||||||| | |||||||||||||||||||||||| |||||||| ||| ||||||||| |||||    
T  19311130 tggcaaaggggtgcataatgaaccttagcattgattcaagtgtatatgatcataacctttggtaaaagggtgcttaatgaac 19311049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 168 - 343
Target Start/End: Complemental strand, 1188221 - 1188046
Alignment:
Q  168 caaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattggaacatttggcaaa 267  Q
    |||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||    
T  1188221 caaaataatggaatcactttagaaccaaaagttgtaacttttcaccaagagttgtaactattcatgggaatctttcatatacattggaacatttggcaaa 1188122  T
Q  268 agggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaacc 343  Q
    ||| || |||||||||||| | |||||| ||||||||||||||||| |||||||||||| ||||| ||| ||||||    
T  1188121 aggatgattaatgaaccttagcattgatacaagtgtatatgatcataacctttggcaaatgggtgtttaatgaacc 1188046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 157 - 343
Target Start/End: Complemental strand, 13654730 - 13654544
Alignment:
Q  157 ttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattggaa 256  Q
    ||||| |||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  13654730 ttggtaatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcaccaagagttgtaactcttcatgagagtctttcatatacattggaa 13654631  T
Q  257 catttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaacc 343  Q
    | |||||||||  |||||||||||||| |||| ||||| |||||||| ||||||||| ||| |||||||| |||| |||| ||||||    
T  13654630 cctttggcaaataggtgcttaatgaacttttgcattgactcaagtgtgtatgatcataacccttggcaaaagggtacttaatgaacc 13654544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 168 - 343
Target Start/End: Complemental strand, 10186099 - 10185924
Alignment:
Q  168 caaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattggaacatttggcaaa 267  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| |||||||||| ||| ||| |||||    
T  10186099 caaaataatggaatcactttagaatcaaaagttgtaactcttcaccaagaattgtaactctttatgggaatctttcatatacattgaaacctttagcaaa 10186000  T
Q  268 agggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaacc 343  Q
     |||||||||||||||||| |  |||||||||||||||||| | || ||||||||||||  |||||||| ||||||    
T  10185999 tgggtgcttaatgaaccttagcgttgattcaagtgtatatggttataacctttggcaaaaaggtgcttaatgaacc 10185924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 157 - 343
Target Start/End: Original strand, 35653036 - 35653222
Alignment:
Q  157 ttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattggaa 256  Q
    |||||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| ||||||| ||||| || ||||| ||||||     
T  35653036 ttggtgatttccaaaataatggaatcactttggaaccaaaagttgtaactcttcaccaagagttgtaacacttcatgggaatcattcatatatattggag 35653135  T
Q  257 catttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaacc 343  Q
    | ||||| ||| |||||||||| |||| || | || ||||||||||||||||||||| ||||||| |||||| ||||||| ||||||    
T  35653136 cctttggaaaaggggtgcttaacgaactttaggatcgattcaagtgtatatgatcataacctttgacaaaggagtgcttaatgaacc 35653222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 155 - 326
Target Start/End: Complemental strand, 1188389 - 1188218
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattgg 254  Q
    |||||||||||| |||||||||||||| ||||||||| ||||| |||||||| |||||||||||||||||||| ||||  ||||||||  |||  |||||    
T  1188389 tgttggtgatttccaaaataatggaatcactttagaaccaaaaattgtaacttttcaccaagagttgtaactcgtcataggaatctttcgtatgaattgg 1188290  T
Q  255 aacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaa 326  Q
    |||||||||||||||| ||||||||||| |||   |||||| ||||||||||| ||||| ||||||||||||    
T  1188289 aacatttggcaaaaggatgcttaatgaatcttaacattgatacaagtgtatattatcataacctttggcaaa 1188218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 159 - 343
Target Start/End: Original strand, 10186307 - 10186491
Alignment:
Q  159 ggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattggaaca 258  Q
    |||| ||| |||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| |||     
T  10186307 ggtgctttccaaaataatggaatcactttagactcaaaagttttaactcttcaccaagagttgtaactcttcatgggaatctttcatatacattgaaact 10186406  T
Q  259 tttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaacc 343  Q
    ||| ||||| ||||||||||||| ||||   ||||||| |||| |||||| |  | || ||||||||| ||||||||| ||||||    
T  10186407 tttagcaaaggggtgcttaatgagccttatcattgattgaagtttatatggttgtaacttttggcaaaagggtgcttaatgaacc 10186491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 156 - 260
Target Start/End: Original strand, 17414304 - 17414408
Alignment:
Q  156 gttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattgga 255  Q
    ||||||||||| |||||||||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||| |||||| || ||||||||| ||    
T  17414304 gttggtgatttccaaaataatggaatcactttagaaccaaaacttgtaactcttcaccaaaagttgtaactcttcattagaatcattcatatacattaga 17414403  T
Q  256 acatt 260  Q
    |||||    
T  17414404 acatt 17414408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 259 - 343
Target Start/End: Original strand, 10186466 - 10186550
Alignment:
Q  259 tttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaacc 343  Q
    |||||||||||||||||||||||||| | | |||||||||||||||||||||||| ||||||| |||||||||||||| ||||||    
T  10186466 tttggcaaaagggtgcttaatgaaccatagcattgattcaagtgtatatgatcataacctttgacaaaggggtgcttaatgaacc 10186550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 255 - 341
Target Start/End: Complemental strand, 43359065 - 43358980
Alignment:
Q  255 aacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaa 341  Q
    ||||||||||||||||||||| |||||||| |   |||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  43359065 aacatttggcaaaagggtgct-aatgaaccataacattgattcaagtgtatatgatcataacctttggcaaaggggtgcttaatgaa 43358980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 172 - 301
Target Start/End: Original strand, 44523889 - 44524017
Alignment:
Q  172 ataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattggaacatttggcaaaaggg 271  Q
    |||||||||| ||||| ||| |||||||||||| ||||| | |||||||||||||||||||| ||||| || |||||||||  ||| |||| |||| |||    
T  44523889 ataatggaatcacttt-gaaccaaaagttgtaaatcttcgctaagagttgtaactcttcatgggaatcattcatatacatttaaacctttgtcaaagggg 44523987  T
Q  272 tgcttaatgaacctttgaattgattcaagt 301  Q
    ||||||||||||| |   ||||||||||||    
T  44523988 tgcttaatgaaccataacattgattcaagt 44524017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 211 - 343
Target Start/End: Complemental strand, 16051552 - 16051420
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgat 310  Q
    ||||| |||| |||||||| ||| ||||| || |||||||||  ||||||||| ||| || | ||||||||||| | | |||||||||||||||||||||    
T  16051552 accaaaagttataactctttatgggaatcattcatatacattataacatttggtaaatggatacttaatgaaccatagcattgattcaagtgtatatgat 16051453  T
Q  311 catgacctttggcaaaggggtgcttagtgaacc 343  Q
    ||| || ||||||||| | ||||||| ||||||    
T  16051452 cataacatttggcaaatgagtgcttaatgaacc 16051420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 259 - 343
Target Start/End: Original strand, 21431566 - 21431650
Alignment:
Q  259 tttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaacc 343  Q
    ||||||||| |||||||| |||||||||   |||||||||||||| ||||||||| |||||||||||| ||||||||| ||||||    
T  21431566 tttggcaaatgggtgcttgatgaaccttaacattgattcaagtgtgtatgatcataacctttggcaaaagggtgcttaatgaacc 21431650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 21430777 - 21430863
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttt 242  Q
    |||||||||||||||||||||| |||| | |||||| |||||||||||||||||||| ||| |||| ||| |||| ||||||||||||    
T  21430777 tgttggtgattttcaaaataatagaatcattttaga-tcaaaagttgtaactcttcatcaaaagttataattctttatgagaatcttt 21430863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 154 - 252
Target Start/End: Original strand, 3696110 - 3696208
Alignment:
Q  154 atgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacatt 252  Q
    |||||||| ||||  ||||||||||||| ||||| ||||||||||||||||||||| | ||| ||||| |||| |||||| ||||| || |||||||||    
T  3696110 atgttggtaatttctaaaataatggaatcactttggaatcaaaagttgtaactctttatcaaaagttgcaacttttcatgggaatcattcatatacatt 3696208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 28574700 - 28574644
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  28574700 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 28574644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 155 - 326
Target Start/End: Complemental strand, 35626591 - 35626430
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattgg 254  Q
    ||||||||||||  ||||||||||||| |||||||| |||||| ||||||||||  ||||||||||          |||| ||||||| ||||||||| |    
T  35626591 tgttggtgatttctaaaataatggaatcactttaga-tcaaaaattgtaactctaaaccaagagttt---------atgaaaatctttcatatacattag 35626502  T
Q  255 aacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaa 326  Q
    ||  |||||||||  ||| |||||||||| | ||  |||||||||||||||||||| || ||||||| ||||    
T  35626501 aatctttggcaaataggtacttaatgaacttctgctttgattcaagtgtatatgattataacctttgacaaa 35626430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 3468472 - 3468415
Alignment:
Q  154 atgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    ||||||||||||| |||||||||||||| | |||||||||||||||||||| ||||||    
T  3468472 atgttggtgatttccaaaataatggaatcattttagaatcaaaagttgtaattcttca 3468415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 43359169 - 43359120
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 260  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||    
T  43359169 accaagagttgtaactcttcatgagaatcattcatatacattggaacatt 43359120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 43359206 - 43359149
Alignment:
Q  154 atgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    ||||||||||||| |||||||||||||| ||||||||| ||| |||||||||||||||    
T  43359206 atgttggtgatttccaaaataatggaatcactttagaaccaagagttgtaactcttca 43359149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 28598712 - 28598656
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| |||||||||||||| | ||||||| |||||||||||||||||||    
T  28598712 tgttggtgatttccaaaataatggaatcaatttagaaccaaaagttgtaactcttca 28598656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 346
Target Start/End: Original strand, 21431509 - 21431594
Alignment:
Q  261 tggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaacctta 346  Q
    |||||||  |||| ||||||||  |||| |||||||||||||||||| || || |||||||||||| ||||||||  |||||||||    
T  21431509 tggcaaataggtgtttaatgaatttttgcattgattcaagtgtatataattataacctttggcaaatgggtgcttgatgaacctta 21431594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 16051588 - 16051534
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactctt 209  Q
    ||||||||||||  ||||||||||||| ||||||||| |||||||| ||||||||    
T  16051588 tgttggtgatttctaaaataatggaatcactttagaaccaaaagttataactctt 16051534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 323
Target Start/End: Complemental strand, 10185949 - 10185885
Alignment:
Q  259 tttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggc 323  Q
    |||||||||| ||||||||||||||| |   |||||||||||| ||||||||||| ||| |||||    
T  10185949 tttggcaaaaaggtgcttaatgaaccatatcattgattcaagtatatatgatcataacccttggc 10185885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 28574664 - 28574615
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 260  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  28574664 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 28574615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 28598676 - 28598627
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 260  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  28598676 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 28598627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 6e-62; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 155 - 343
Target Start/End: Complemental strand, 47071814 - 47071626
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattgg 254  Q
    |||||||||||| |||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||    
T  47071814 tgttggtgatttccaaaataatggaatcactttacaaccaaaagttgtaactcttcaccaagagttgtaactcttcatgaaaatcattcatatacattgg 47071715  T
Q  255 aacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaacc 343  Q
    ||| ||||||||| |||||||||||||||| |   |||||||||||||||||||||||| |||||||||||| || |||||| ||||||    
T  47071714 aacctttggcaaatgggtgcttaatgaaccataacattgattcaagtgtatatgatcataacctttggcaaatggatgcttaatgaacc 47071626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 155 - 346
Target Start/End: Original strand, 14643526 - 14643717
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattgg 254  Q
    |||||||||||| ||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||| || |||||||||||    
T  14643526 tgttggtgatttacaaaataattgaatcactttagaaccaaaagttgtaactcttcaccaagagttgtaactattcatgggaatcattcatatacattgg 14643625  T
Q  255 aacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaacctta 346  Q
    ||| ||||||||||||||||||||||||||||   |||||||||||||||||||||||| || |||| |||||| ||| ||| |||||||||    
T  14643626 aacctttggcaaaagggtgcttaatgaaccttaacattgattcaagtgtatatgatcataacatttgacaaaggagtgtttaatgaacctta 14643717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 155 - 343
Target Start/End: Complemental strand, 22119130 - 22118942
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattgg 254  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||| |||||||| ||| |||| || || ||||||||    
T  22119130 tgttggtgattttcaaaataatggaatcactttagaaccaaaagttgtaactcttcatcaagagttgcaactcttcctgaaaatcattcatttacattgg 22119031  T
Q  255 aacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaacc 343  Q
    ||| ||||||||| |||||||||||||||||| | ||||||||||||||||||||||   ||||| |||||||||||||||| ||||||    
T  22119030 aacctttggcaaatgggtgcttaatgaaccttagcattgattcaagtgtatatgatcgcaaccttcggcaaaggggtgcttaatgaacc 22118942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 153 - 343
Target Start/End: Original strand, 30019636 - 30019817
Alignment:
Q  153 tatgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacatt 252  Q
    ||||||||||||||  ||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  30019636 tatgttggtgatttctaaaataatggaatcactttagaatcaa--gttgtaactcttcaccaagagttgtaactcttcatgggaatctttcatatacatt 30019733  T
Q  253 ggaacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaacc 343  Q
    ||||| |||       |||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||  |||||||| ||||||    
T  30019734 ggaaccttt-------gggtgcttaatgaacctttgcattgattcaagtgtgtatgatcataacctttggcaaaaaggtgcttaatgaacc 30019817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 219 - 343
Target Start/End: Original strand, 54859022 - 54859146
Alignment:
Q  219 ttgtaactcttcatgagaatcttttatatacattggaacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacct 318  Q
    ||||||||||||||  ||||| || |||||||||||||| |||||||||||||||||||||||| | |   |||||||||||||||||||||||| ||||    
T  54859022 ttgtaactcttcattggaatcattcatatacattggaacctttggcaaaagggtgcttaatgaaacataacattgattcaagtgtatatgatcataacct 54859121  T
Q  319 ttggcaaaggggtgcttagtgaacc 343  Q
    |||||||| || |||||| ||||||    
T  54859122 ttggcaaatggatgcttaatgaacc 54859146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 153 - 284
Target Start/End: Original strand, 34601823 - 34601954
Alignment:
Q  153 tatgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacatt 252  Q
    ||||||||||||||  ||||||||||||| | |||||||  ||||||||||||| ||||| |  ||||||||||||||||||||||| || |||||||||    
T  34601823 tatgttggtgatttctaaaataatggaatcattttagaactaaaagttgtaacttttcacgagaagttgtaactcttcatgagaatcattcatatacatt 34601922  T
Q  253 ggaacatttggcaaaagggtgcttaatgaacc 284  Q
     |||  ||||||||| ||||||||||||||||    
T  34601923 tgaatctttggcaaaggggtgcttaatgaacc 34601954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 155 - 260
Target Start/End: Original strand, 3409329 - 3409434
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattgg 254  Q
    |||||||||||| |||||||||||||| |||||||||  ||||||||| |||||| ||||||| ||||||||||||||||||| | || |||||||||||    
T  3409329 tgttggtgatttccaaaataatggaatcactttagaactaaaagttgttactcttgaccaagatttgtaactcttcatgagaaccattcatatacattgg 3409428  T
Q  255 aacatt 260  Q
    ||||||    
T  3409429 aacatt 3409434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 214 - 343
Target Start/End: Original strand, 25618089 - 25618217
Alignment:
Q  214 aagagttgtaactcttcatgagaatcttttatatacattggaacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcat 313  Q
    ||||||||||||| ||||||||| ||||| |||||||||| ||| |||| ||||||||| |||||||||| |||| ||||||||||||||||||| | ||    
T  25618089 aagagttgtaactgttcatgaga-tctttcatatacattgtaacctttgacaaaagggttcttaatgaacttttgcattgattcaagtgtatatggttat 25618187  T
Q  314 gacctttggcaaaggggtgcttagtgaacc 343  Q
     || ||||||||| ||||||||| ||||||    
T  25618188 aacatttggcaaaagggtgcttaatgaacc 25618217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 259 - 341
Target Start/End: Original strand, 3409493 - 3409575
Alignment:
Q  259 tttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaa 341  Q
    |||||||||||||| ||||||||||| |   |||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  3409493 tttggcaaaagggtacttaatgaaccataacattgattcaagtgtatatgatcataacctttggcaaaggggtgcttaatgaa 3409575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 255 - 341
Target Start/End: Original strand, 32429174 - 32429260
Alignment:
Q  255 aacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaa 341  Q
    |||||||||||||||||||||||||||| | |   |||||||||||||||||||||||| ||||||| |||||||||||||| ||||    
T  32429174 aacatttggcaaaagggtgcttaatgaatcataacattgattcaagtgtatatgatcataacctttgacaaaggggtgcttaatgaa 32429260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 159 - 260
Target Start/End: Complemental strand, 18716958 - 18716858
Alignment:
Q  159 ggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattggaaca 258  Q
    |||||||| |||||||||||||| | ||||||| ||||| | ||||||||||||||||||||||||||||||||| ||| | || ||||||||||| |||    
T  18716958 ggtgatttccaaaataatggaatcagtttagaaccaaaact-gtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacattggtaca 18716860  T
Q  259 tt 260  Q
    ||    
T  18716859 tt 18716858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 226 - 346
Target Start/End: Original strand, 34279305 - 34279426
Alignment:
Q  226 tcttcatgagaatcttttatatacattggaa-catttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggca 324  Q
    |||||||| ||||| || ||||||||| ||| | |||| |||| |||||||||||||||||| | ||||||||||||||||||||| || ||||||||||    
T  34279305 tcttcatgggaatcattcatatacattagaatcttttgacaaatgggtgcttaatgaaccttagcattgattcaagtgtatatgattataacctttggca 34279404  T
Q  325 aaggggtgcttagtgaacctta 346  Q
    || | ||||||| | |||||||    
T  34279405 aatgagtgcttaataaacctta 34279426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 159 - 260
Target Start/End: Complemental strand, 18737634 - 18737531
Alignment:
Q  159 ggtgattttcaaaataatggaattactttagaatcaaaagttgtaactct---tcaccaagagttgtaactcttcatgagaatcttttatatacattgga 255  Q
    |||||||| |||||||||||||| | ||||||| ||||| ||||||||||   ||||||||||||||||||||||||| ||| | || |||||||||||     
T  18737634 ggtgatttccaaaataatggaatcagtttagaaccaaaa-ttgtaactctaattcaccaagagttgtaactcttcatgggaaccattcatatacattggt 18737536  T
Q  256 acatt 260  Q
    |||||    
T  18737535 acatt 18737531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 255 - 325
Target Start/End: Original strand, 25618188 - 25618258
Alignment:
Q  255 aacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaa 325  Q
    |||||||||||||||||||||||||||||| |   |||||||||||||||||||||||| |||||| ||||    
T  25618188 aacatttggcaaaagggtgcttaatgaaccataacattgattcaagtgtatatgatcataacctttcgcaa 25618258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 35091318 - 35091262
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  35091318 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 35091262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 35096433 - 35096375
Alignment:
Q  153 tatgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||||| |||||||||||||| |||||||||  ||||||||||||||||||    
T  35096433 tatgttggtgatttccaaaataatggaatcactttagaacaaaaagttgtaactcttca 35096375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 3424114 - 3424170
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||| ||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  3424114 tgtttgtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 3424170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 32429034 - 32429090
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| |||||||||||||| ||||||||| ||| |||||||||||||||    
T  32429034 tgttggtgatttccaaaataatggaatcactttagaaccaagagttgtaactcttca 32429090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 332
Target Start/End: Original strand, 3424257 - 3424330
Alignment:
Q  259 tttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtg 332  Q
    |||||||||||||||||||||||||| |   ||||||| ||||  |||||||||| ||||||| ||||||||||    
T  3424257 tttggcaaaagggtgcttaatgaaccataacattgatttaagtcgatatgatcataacctttgacaaaggggtg 3424330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 32429070 - 32429119
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 260  Q
    |||||||||||||||||||||||  |||| || |||||||||||||||||    
T  32429070 accaagagttgtaactcttcatggaaatcattcatatacattggaacatt 32429119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 34279254 - 34279299
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagtt 200  Q
    |||||||||||| |||||||||||||| ||||||||| ||||||||    
T  34279254 tgttggtgatttccaaaataatggaatcactttagaaccaaaagtt 34279299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 332
Target Start/End: Original strand, 34279398 - 34279471
Alignment:
Q  259 tttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtg 332  Q
    ||||||||| | ||||||||| ||||||   ||||||| |||||||||||||||| |||||||| ||| |||||    
T  34279398 tttggcaaatgagtgcttaataaaccttaacattgatttaagtgtatatgatcataacctttggtaaaagggtg 34279471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 343
Target Start/End: Complemental strand, 18671149 - 18671065
Alignment:
Q  259 tttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaacc 343  Q
    |||||||||| ||||||||||||||| |   ||||||||||||||||||||  || |||||||| ||| | | ||||| ||||||    
T  18671149 tttggcaaaatggtgcttaatgaaccataacattgattcaagtgtatatgaagataacctttggtaaaagagggcttaatgaacc 18671065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 211 - 270
Target Start/End: Original strand, 34128159 - 34128218
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatttggcaaaagg 270  Q
    ||||| ||||||||||||   ||||||||||| ||||| |||||||| ||||||||||||    
T  34128159 accaaaagttgtaactctctgtgagaatctttcatatatattggaacctttggcaaaagg 34128218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 35091282 - 35091233
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 260  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  35091282 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 35091233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 343
Target Start/End: Complemental strand, 18716787 - 18716715
Alignment:
Q  271 gtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaacc 343  Q
    |||||||||||||| |   |||||||||||||||||||||||| || ||||| ||| | | ||||| ||||||    
T  18716787 gtgcttaatgaaccataacattgattcaagtgtatatgatcataacttttggtaaaagagagcttaatgaacc 18716715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 343
Target Start/End: Complemental strand, 18737460 - 18737388
Alignment:
Q  271 gtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaacc 343  Q
    |||||||||||||| |   |||||||||||||||||||||||| || ||||| ||| | | ||||| ||||||    
T  18737460 gtgcttaatgaaccataacattgattcaagtgtatatgatcataacttttggtaaaagagagcttaatgaacc 18737388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 155 - 346
Target Start/End: Complemental strand, 173766 - 173575
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattgg 254  Q
    |||||||||||| ||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||| || |||||||||||    
T  173766 tgttggtgatttacaaaataattgaatcactttagaaccaaaagttgtaactcttcaccaagagttgtaactattcatgggaatcattcatatacattgg 173667  T
Q  255 aacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaacctta 346  Q
    ||| ||||||||||||||||||||||||||||   |||||||||||||||||||||||| || |||| |||||| ||| ||| |||||||||    
T  173666 aacctttggcaaaagggtgcttaatgaaccttaacattgattcaagtgtatatgatcataacatttgacaaaggagtgtttaatgaacctta 173575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 157 - 343
Target Start/End: Complemental strand, 144491 - 144305
Alignment:
Q  157 ttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattggaa 256  Q
    ||||| |||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  144491 ttggtaatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcaccaagagttgtaactcttcatgagagtctttcatatacattggaa 144392  T
Q  257 catttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaacc 343  Q
    | |||||||||  |||||||||||||| |||| ||||| |||||||| ||||||||| ||| |||||||| |||| |||| ||||||    
T  144391 cctttggcaaataggtgcttaatgaacttttgcattgactcaagtgtgtatgatcataacccttggcaaaagggtacttaatgaacc 144305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 9e-58; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 153 - 346
Target Start/End: Original strand, 35368621 - 35368814
Alignment:
Q  153 tatgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacatt 252  Q
    ||||||||| ||||  |||| |||||||| |||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||| |||||||||    
T  35368621 tatgttggtaatttctaaaagaatggaatcactttagaatcaaaagttgtaacttttcatcaagagttgtaactctttatgagaatctttcatatacatt 35368720  T
Q  253 ggaacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaacctta 346  Q
    ||||| ||||||||| | |||||||||||||||| | ||||||| ||||||||||||| || ||||||| ||||| |||||||| |||||||||    
T  35368721 ggaacctttggcaaatgagtgcttaatgaaccttagcattgatttaagtgtatatgattataacctttgacaaagaggtgcttaatgaacctta 35368814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 155 - 343
Target Start/End: Original strand, 43540564 - 43540751
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattgg 254  Q
    |||||||||||| ||||||||| |||| | ||||||| |||||||||||||||||||||||||||||||||||||||||  |||  || |||||||||||    
T  43540564 tgttggtgatttccaaaataattgaatcaatttagaaccaaaagttgtaactcttcaccaagagttgtaactcttcatggtaattattcatatacattgg 43540663  T
Q  255 aacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaacc 343  Q
    ||| ||||||||| |||||||||||||| ||| | |||||||||||||||||||||||| ||||||| ||||  |||||||| ||||||    
T  43540664 aacctttggcaaaggggtgcttaatgaatcttagtattgattcaagtgtatatgatcataacctttgacaaa-aggtgcttaatgaacc 43540751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 211 - 341
Target Start/End: Original strand, 13556141 - 13556271
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgat 310  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||  |||||||||||||| |||| |||||||||||||||||||||    
T  13556141 accaagagttgtaactcttcatgggaatctttcatatacattggaacctttggcaaataggtgcttaatgaacatttgcattgattcaagtgtatatgat 13556240  T
Q  311 catgacctttggcaaaggggtgcttagtgaa 341  Q
     || ||||||||||||  |||||||| ||||    
T  13556241 tataacctttggcaaaaaggtgcttaatgaa 13556271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 155 - 260
Target Start/End: Complemental strand, 2024467 - 2024362
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattgg 254  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||| | |||| ||||||||||||||||||||| | ||| | || |||||||||||    
T  2024467 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgttaatcttgaccaagagttgtaactcttcacgggaaccattcatatacattgg 2024368  T
Q  255 aacatt 260  Q
    ||||||    
T  2024367 aacatt 2024362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 9872225 - 9872281
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  9872225 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 9872281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 9877340 - 9877396
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  9877340 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 9877396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 39909361 - 39909306
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttc 210  Q
    |||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||    
T  39909361 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttc 39909306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 341
Target Start/End: Complemental strand, 2023272 - 2023190
Alignment:
Q  259 tttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaa 341  Q
    |||||||||||||||||||||||| | |   |||||||||||||||||||||||| ||||||| |||| ||||| ||| ||||    
T  2023272 tttggcaaaagggtgcttaatgaatcataacattgattcaagtgtatatgatcataacctttgacaaatgggtgtttaatgaa 2023190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 253
Target Start/End: Complemental strand, 4556018 - 4555920
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattg 253  Q
    |||||||||||| |||||||||||||| |||||||||| ||||||||||||| || | ||| |||| || ||||||| |  |||| || ||||||||||    
T  4556018 tgttggtgatttccaaaataatggaatcactttagaattaaaagttgtaactttttatcaaaagttatacctcttcacggaaatcattcatatacattg 4555920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 39904248 - 39904192
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| ||||||||| |||| ||||||||| |||||||||||||||||||    
T  39904248 tgttggtgatttccaaaataattgaatcactttagaaccaaaagttgtaactcttca 39904192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 13556105 - 13556161
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| |||||||||||||| |||||| || ||| |||||||||||||||    
T  13556105 tgttggtgatttccaaaataatggaatcactttaaaaccaagagttgtaactcttca 13556161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 211 - 255
Target Start/End: Original strand, 24091825 - 24091869
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattgga 255  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||    
T  24091825 accaagagttgtaactctttatgagaatctttcatatacattgga 24091869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 313
Target Start/End: Original strand, 35368797 - 35368840
Alignment:
Q  270 ggtgcttaatgaacctttgaattgattcaagtgtatatgatcat 313  Q
    ||||||||||||||||| | ||||||||||||||||||||||||    
T  35368797 ggtgcttaatgaaccttagcattgattcaagtgtatatgatcat 35368840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 341
Target Start/End: Complemental strand, 43379686 - 43379620
Alignment:
Q  275 ttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaa 341  Q
    |||||||||| | | |||||||||||||||||||||||| | |||||| ||| | ||||||||||||    
T  43379686 ttaatgaaccgtagcattgattcaagtgtatatgatcataaactttggtaaaagagtgcttagtgaa 43379620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 42688407 - 42688453
Alignment:
Q  101 actaacaaaactttattgaattagaatgcttaaaataacataaacta 147  Q
    ||||||||||||||||||| || ||||||| ||||| ||||||||||    
T  42688407 actaacaaaactttattgattttgaatgctaaaaatgacataaacta 42688453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 9872261 - 9872310
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 260  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  9872261 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 9872310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 9877376 - 9877425
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 260  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  9877376 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 9877425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 24091794 - 24091843
Alignment:
Q  160 gtgattttcaaaataatggaattactttagaatcaaaagttgtaactctt 209  Q
    ||||||| ||||||||| |||| ||||||||| ||| |||||||||||||    
T  24091794 gtgatttccaaaataatagaatcactttagaaccaagagttgtaactctt 24091843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 39904212 - 39904163
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 260  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  39904212 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 39904163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 155 - 346
Target Start/End: Complemental strand, 29827885 - 29827694
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattgg 254  Q
    |||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||| ||||| |||||    
T  29827885 tgttggtgatttccaaaagaatggaatcactttagaatcaaaagttgtaactcttcaccaagagttgtaattctgcatgggaatctttcatatagattgg 29827786  T
Q  255 aacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaacctta 346  Q
    ||| |||||||||  |||| |||||||||||||| ||||||||||||||||||||| || || |||| ||||  |||||||| |||||||||    
T  29827785 aacctttggcaaacaggtgtttaatgaacctttgcattgattcaagtgtatatgattataacatttgacaaattggtgcttaatgaacctta 29827694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 155 - 260
Target Start/End: Original strand, 18023914 - 18024020
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaaga-gttgtaactcttcatgagaatcttttatatacattg 253  Q
    |||||||||||| |||||||||||||| |||||| || ||||||||||||||  ||||||| | |||||||||||||||  |||||  | ||||||||||    
T  18023914 tgttggtgatttccaaaataatggaatcactttataaccaaaagttgtaactaatcaccaaaaggttgtaactcttcataggaatcaatcatatacattg 18024013  T
Q  254 gaacatt 260  Q
    |||||||    
T  18024014 gaacatt 18024020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 6852750 - 6852809
Alignment:
Q  152 ttatgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    ||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  6852750 ttatgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 6852809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 10584656 - 10584715
Alignment:
Q  152 ttatgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    ||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  10584656 ttatgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 10584715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 33702397 - 33702456
Alignment:
Q  152 ttatgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    ||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  33702397 ttatgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 33702456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 8465155 - 8465097
Alignment:
Q  153 tatgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  8465155 tatgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 8465097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 255 - 341
Target Start/End: Complemental strand, 49784809 - 49784723
Alignment:
Q  255 aacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaa 341  Q
    |||||||||||||||||||| |||| |||| |   |||||||||||||||||||||||| | |||||||||| ||||||||| ||||    
T  49784809 aacatttggcaaaagggtgcataataaaccatatcattgattcaagtgtatatgatcataagctttggcaaatgggtgcttaatgaa 49784723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 4050211 - 4050155
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  4050211 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 4050155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 4055345 - 4055289
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  4055345 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 4055289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 5481289 - 5481345
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  5481289 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 5481345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 6857856 - 6857912
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  6857856 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 6857912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 10672739 - 10672795
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  10672739 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 10672795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 10677852 - 10677908
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  10677852 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 10677908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 1302042 - 1302101
Alignment:
Q  152 ttatgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||| |||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  1302042 ttatgttggtaatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 1302101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 269580 - 269526
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactctt 209  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||| |||||    
T  269580 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttgtagctctt 269526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 20891550 - 20891496
Alignment:
Q  157 ttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  20891550 ttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 20891496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 8458715 - 8458659
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| |||||||||||||| |||||||||  ||||||||||||||||||    
T  8458715 tgttggtgatttccaaaataatggaatcactttagaactaaaagttgtaactcttca 8458659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 10591100 - 10591152
Alignment:
Q  159 ggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  10591100 ggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 10591152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 31076201 - 31076257
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||| ||||||||    
T  31076201 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtgactcttca 31076257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 31081308 - 31081364
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||| ||||||||    
T  31081308 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtgactcttca 31081364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 49784952 - 49784893
Alignment:
Q  152 ttatgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    ||||||||||||||| ||||||||| |||| |||||| || |||||||||||||||||||    
T  49784952 ttatgttggtgatttccaaaataatagaatcactttaaaaccaaaagttgtaactcttca 49784893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 255 - 341
Target Start/End: Complemental strand, 29827726 - 29827640
Alignment:
Q  255 aacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaa 341  Q
    |||||||| ||||  ||||||||||||||||| | |||||||||||||| |||| |||| | ||||||||||  |||||||| ||||    
T  29827726 aacatttgacaaattggtgcttaatgaaccttagcattgattcaagtgtgtatggtcataatctttggcaaaatggtgcttaatgaa 29827640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 5457814 - 5457868
Alignment:
Q  152 ttatgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    ||||||||||||||| |||||||||||||     ||||||||||||||||||||||||||    
T  5457814 ttatgttggtgatttccaaaataatggaa-----ttagaatcaaaagttgtaactcttca 5457868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 260
Target Start/End: Original strand, 18023324 - 18023427
Alignment:
Q  157 ttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattggaa 256  Q
    |||||||||| |||||||||||||| ||||||||||  |||||||||| |||| ||||  | ||| |||| |||||  ||||| || ||||| ||| |||    
T  18023324 ttggtgatttccaaaataatggaatcactttagaattgaaagttgtaagtctttaccagaaattgcaacttttcataggaatcattcatatatattagaa 18023423  T
Q  257 catt 260  Q
    ||||    
T  18023424 catt 18023427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 31018015 - 31018090
Alignment:
Q  153 tatgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactctt 229  Q
    ||||||||| ||||| |||||||| |||| | ||||||||  ||||||| || ||||||| ||||||||||||||||    
T  31018015 tatgttggtaatttttaaaataatagaatca-tttagaatataaagttgcaattcttcactaagagttgtaactctt 31018090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 301
Target Start/End: Complemental strand, 20891396 - 20891354
Alignment:
Q  259 tttggcaaaagggtgcttaatgaacctttgaattgattcaagt 301  Q
    |||||||||||||||||||||||||| | | ||||||||||||    
T  20891396 tttggcaaaagggtgcttaatgaaccatagcattgattcaagt 20891354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 20891516 - 20891474
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattg 253  Q
    ||||| ||||||||||||||||||||||| || ||||||||||    
T  20891516 accaaaagttgtaactcttcatgagaatcattcatatacattg 20891474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 4050175 - 4050126
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 260  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  4050175 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 4050126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 4055309 - 4055260
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 260  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  4055309 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 4055260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 5481325 - 5481374
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 260  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  5481325 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 5481374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 6852789 - 6852838
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 260  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  6852789 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 6852838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 6857892 - 6857941
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 260  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  6857892 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 6857941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 8465117 - 8465068
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 260  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  8465117 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 8465068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 10584695 - 10584744
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 260  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  10584695 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 10584744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 10591132 - 10591181
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 260  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  10591132 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 10591181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 10672775 - 10672824
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 260  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  10672775 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 10672824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 10677888 - 10677937
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 260  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  10677888 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 10677937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 49784913 - 49784864
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 260  Q
    ||||| |||||||||||||||||  |||| || |||||||||||||||||    
T  49784913 accaaaagttgtaactcttcatggaaatcattcatatacattggaacatt 49784864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 9e-55; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 155 - 343
Target Start/End: Complemental strand, 42780596 - 42780408
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattgg 254  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||| |||||| ||||| |||||||||||||||||||||||||| |||||||||||    
T  42780596 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgttactcttgaccaaaagttgtaactcttcatgagaatctttcatatacattgg 42780497  T
Q  255 aacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaacc 343  Q
    ||| ||| |||||  ||||||||||||||| |   |||||||||||||||||||||||| |||||||||||| ||  ||||| ||||||    
T  42780496 aacttttagcaaataggtgcttaatgaaccataacattgattcaagtgtatatgatcataacctttggcaaatggtggcttaatgaacc 42780408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 217 - 346
Target Start/End: Complemental strand, 716674 - 716545
Alignment:
Q  217 agttgtaactcttcatgagaatcttttatatacattggaacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgac 316  Q
    ||||||||||||| ||| |||||||| |||||||||||||| || || |||  |||| ||||| |||||||| ||||||||||||||||||||| || ||    
T  716674 agttgtaactctttatgtgaatctttcatatacattggaaccttaggtaaataggtgtttaataaacctttgcattgattcaagtgtatatgattataac 716575  T
Q  317 ctttggcaaaggggtgcttagtgaacctta 346  Q
    |||||| ||||||||||||| |||| ||||    
T  716574 ctttggtaaaggggtgcttaatgaagctta 716545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 168 - 262
Target Start/End: Original strand, 20892111 - 20892205
Alignment:
Q  168 caaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattggaacatttg 262  Q
    |||||||||||||| |||||| || ||||||||||| || |||||||||||||||||||||||||||||| | || |||||||||||||||||||    
T  20892111 caaaataatggaatcactttaaaaccaaaagttgtatcttttcaccaagagttgtaactcttcatgagaaccattcatatacattggaacatttg 20892205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 14917183 - 14917239
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  14917183 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 14917239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 17720000 - 17720056
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  17720000 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 17720056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 45120790 - 45120734
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||    
T  45120790 tgttggtgatttccaaaataatggaatcactttagaattaaaagttgtaactcttca 45120734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 36 - 155
Target Start/End: Complemental strand, 23482042 - 23481924
Alignment:
Q  36 ttgatattgaacctcaaatgaaaaccataacatttatagtaatatagctccaacatagaaccaatactaacaaaactttattgaattagaatgcttaaaa 135  Q
    |||||||||||| | ||||||||| ||||   ||| |||||| |||||||||| |||  | ||| |||| | |||||||||||||||| ||| |||||||    
T  23482042 ttgatattgaacttgaaatgaaaagcatagtgtttgtagtaaaatagctccaaaatatgatcaaaacta-cgaaactttattgaattaaaatacttaaaa 23481944  T
Q  136 taacataaactatgacttat 155  Q
    |||||| |||||||||||||    
T  23481943 taacatgaactatgacttat 23481924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 211
Target Start/End: Original strand, 30283249 - 30283307
Alignment:
Q  153 tatgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||||| |||||||||||||| | ||||||| |||||||||||||||||||    
T  30283249 tatgttggtgatttccaaaataatggaatcattttagaaccaaaagttgtaactcttca 30283307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 17720327 - 17720383
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| ||||||||| |||| ||||||||| |||||||||||||||||||    
T  17720327 tgttggtgatttccaaaataatagaatcactttagaaccaaaagttgtaactcttca 17720383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 39179002 - 39178946
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| |||||||||||||| |||||||||  ||||||||||||||||||    
T  39179002 tgttggtgatttccaaaataatggaatcactttagaactaaaagttgtaactcttca 39178946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 716573 - 716506
Alignment:
Q  259 tttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaa 326  Q
    ||||| ||| |||||||||||||| ||| | ||||||||||| || ||||||||| ||||||||||||    
T  716573 tttggtaaaggggtgcttaatgaagcttagcattgattcaagagtgtatgatcataacctttggcaaa 716506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 325
Target Start/End: Original strand, 20892197 - 20892242
Alignment:
Q  280 gaacctttgaattgattcaagtgtatatgatcatgacctttggcaa 325  Q
    |||| |||| ||||||||||||||||||||||||||| ||||||||    
T  20892197 gaacatttgtattgattcaagtgtatatgatcatgacatttggcaa 20892242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 343
Target Start/End: Original strand, 20892232 - 20892319
Alignment:
Q  256 acatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaacc 343  Q
    |||||||||||  | ||| |||||||||| |   |||||||||||||||||||||||| || |||| ||||  |||||||| ||||||    
T  20892232 acatttggcaagtgagtgattaatgaaccataacattgattcaagtgtatatgatcataacatttgccaaaaaggtgcttaatgaacc 20892319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 14917219 - 14917268
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 260  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  14917219 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 14917268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 17720363 - 17720412
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 260  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  17720363 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 17720412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 15207301 - 15207147
Alignment:
Q  1 tcttgctcattctacaaacaaacattctcgcctcattgatattgaacctcaaatgaaaaccataacatttatagtaatatagctccaacatagaaccaat 100  Q
    |||||||||| || ||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||| |||| |||| |||||||||||     
T  15207301 tcttgctcatacttcaaccaaacattctcacctcattgatattgaacctgaaatgaaaaccataacatttgtagtaaaatagttccatcatagaaccaaa 15207202  T
Q  101 actaacaaaactttattgaattagaatgcttaaaataacataaactatgacttat 155  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  15207201 actaacgaaactttattgaattagactgcttaaaataacataaactatgacttat 15207147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 158 - 343
Target Start/End: Original strand, 18608435 - 18608619
Alignment:
Q  158 tggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattggaac 257  Q
    ||||||||| |||||||||||||| |||||||||  ||||||||| | |||| ||||||||||||||||||||||| ||||| || ||||| ||||| |     
T  18608435 tggtgatttccaaaataatggaatcactttagaactaaaagttgtgattcttaaccaagagttgtaactcttcatgggaatcattcatata-attgggat 18608533  T
Q  258 atttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaacc 343  Q
     ||||||||| |||||||| ||||||| | | | ||||||||||||||||| |||| |||||||||||||||||||||| ||||||    
T  18608534 ctttggcaaaggggtgcttgatgaaccatagcagtgattcaagtgtatatgttcataacctttggcaaaggggtgcttaatgaacc 18608619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 15201542 - 15201390
Alignment:
Q  1 tcttgctcattctacaaacaaacattctcgcctcattgatattgaacctcaaatgaaaaccataacatttatagtaatatagctccaacatagaaccaat 100  Q
    |||||||||| || ||| ||||||||||| |||  |||||||||||||| |||||||||||||| ||||| |||||| |||| ||||||||||||||||     
T  15201542 tcttgctcatacttcaaccaaacattctcacct--ttgatattgaacctgaaatgaaaaccatagcatttgtagtaaaatagttccaacatagaaccaaa 15201445  T
Q  101 actaacaaaactttattgaattagaatgcttaaaataacataaactatgacttat 155  Q
    |||||| ||||||||| ||||||||||||||||||| | ||||||||||||||||    
T  15201444 actaacgaaactttatcgaattagaatgcttaaaatgatataaactatgacttat 15201390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 213 - 341
Target Start/End: Original strand, 43956689 - 43956817
Alignment:
Q  213 caagagttgtaactcttcatgagaatcttttatatacattggaacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatca 312  Q
    |||||||||||||||||||||  ||||||| |||||||||||||  |||||||||  |||||||||||||| |||  |||||||||| |||||||||| |    
T  43956689 caagagttgtaactcttcatggaaatctttcatatacattggaatctttggcaaataggtgcttaatgaacatttacattgattcaaatgtatatgatta 43956788  T
Q  313 tgacctttggcaaaggggtgcttagtgaa 341  Q
    | ||||||||||||  |||||||| ||||    
T  43956789 taacctttggcaaaaaggtgcttaatgaa 43956817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 154 - 260
Target Start/End: Original strand, 10340697 - 10340803
Alignment:
Q  154 atgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattg 253  Q
    ||||||||||||| | |||||||||||| ||||||||| |||||||||| | |||| |||||||||||||||||||||||  || | || ||||||||||    
T  10340697 atgttggtgatttcccaaataatggaatcactttagaaccaaaagttgttaatcttgaccaagagttgtaactcttcatggaaaccattcatatacattg 10340796  T
Q  254 gaacatt 260  Q
    |||||||    
T  10340797 gaacatt 10340803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 155 - 310
Target Start/End: Complemental strand, 1782237 - 1782083
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattgg 254  Q
    |||||| |||||  ||||||||||||||| |||||||  ||||||| ||||||||||| |||||||||||||||| | | ||||| || ||||  |||||    
T  1782237 tgttggagatttctaaaataatggaattattttagaacaaaaagttataactcttcac-aagagttgtaactctttacgtgaatcattcatatgtattgg 1782139  T
Q  255 aacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgat 310  Q
    ||| |||||||||   ||| |||||||||| |   |||||||||||||||||||||    
T  1782138 aacctttggcaaatcagtgattaatgaaccataacattgattcaagtgtatatgat 1782083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 14314712 - 14314766
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactctt 209  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14314712 tgttggtgattttcaaaataatggaattactttagaaccaaaagttgtaactctt 14314766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 43956650 - 43956707
Alignment:
Q  154 atgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||    
T  43956650 atgttggtgatttttaaaataatggaatcactttagaatcaagagttgtaactcttca 43956707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 14318416 - 14318472
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  14318416 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 14318472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 26981676 - 26981732
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  26981676 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 26981732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 26986790 - 26986846
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  26986790 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 26986846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 34108634 - 34108578
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  34108634 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 34108578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 18493978 - 18494034
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| |||||||||||||| | ||||||| |||||||||||||||||||    
T  18493978 tgttggtgatttccaaaataatggaatcaatttagaaccaaaagttgtaactcttca 18494034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 346
Target Start/End: Original strand, 25953012 - 25953087
Alignment:
Q  271 gtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaacctta 346  Q
    |||||||||||||| ||| |||||||||||||||||| ||||||| |||||||||  | ||||||  |||||||||    
T  25953012 gtgcttaatgaacccttgcattgattcaagtgtatattatcatgagctttggcaattgagtgcttgatgaacctta 25953087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 10340883 - 10340934
Alignment:
Q  290 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaa 341  Q
    |||||||||||||||||||||||| ||||||| |||| ||||||||| ||||    
T  10340883 attgattcaagtgtatatgatcataacctttgacaaaagggtgcttaatgaa 10340934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 257
Target Start/End: Original strand, 25952305 - 25952368
Alignment:
Q  194 aaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattggaac 257  Q
    |||||||||||||||||||||| | || ||| ||||||| | ||||||| ||||| ||||||||    
T  25952305 aaaagttgtaactcttcaccaacaattataattcttcattacaatctttcatatatattggaac 25952368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 14318452 - 14318501
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 260  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  14318452 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 14318501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 18494014 - 18494063
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 260  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  18494014 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 18494063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 343
Target Start/End: Original strand, 25953071 - 25953144
Alignment:
Q  271 gtgcttaatgaacctttgaattgattcaagtgtatatgatcatgac-ctttggcaaaggggtgcttagtgaacc 343  Q
    |||||| |||||||||   |||||||||||||||||||||||| ||  ||||||||| || |||||| ||||||    
T  25953071 gtgcttgatgaaccttaatattgattcaagtgtatatgatcataacattttggcaaaaggatgcttaatgaacc 25953144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 26981712 - 26981761
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 260  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  26981712 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 26981761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 26986826 - 26986875
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 260  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  26986826 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 26986875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 34108598 - 34108549
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 260  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  34108598 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 34108549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 155 - 284
Target Start/End: Original strand, 37459703 - 37459832
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattgg 254  Q
    |||| |||||||| ||||||||||||| |||||| ||||||||||| |||||||||||||| ||  | ||||||||||| ||||| || ||||||||||     
T  37459703 tgttagtgatttttaaaataatggaatcactttaaaatcaaaagttttaactcttcaccaaaagcaggaactcttcatgggaatcattcatatacattgt 37459802  T
Q  255 aacatttggcaaaagggtgcttaatgaacc 284  Q
    ||| ||||||||| | ||| ||||||||||    
T  37459803 aacctttggcaaatgagtgtttaatgaacc 37459832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 155 - 232
Target Start/End: Original strand, 2248853 - 2248930
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcat 232  Q
    ||||||||||||  ||||||||||||| ||||||||| ||||||| ||||||||||| ||||||||||||||||||||    
T  2248853 tgttggtgatttctaaaataatggaatcactttagaaccaaaagtagtaactcttcagcaagagttgtaactcttcat 2248930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 12852079 - 12852023
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  12852079 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 12852023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 12857192 - 12857136
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  12857192 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 12857136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 26051424 - 26051368
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  26051424 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 26051368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 26056537 - 26056481
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  26056537 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 26056481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 26060783 - 26060727
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  26060783 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 26060727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 26065896 - 26065840
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  26065896 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 26065840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 4181276 - 4181330
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactctt 209  Q
    |||||||||||| |||||||||||||| |||||| |||||||||||| |||||||    
T  4181276 tgttggtgatttccaaaataatggaatcactttaaaatcaaaagttgcaactctt 4181330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 35352120 - 35352166
Alignment:
Q  154 atgttggtgattttcaaaataatggaattactttagaatcaaaagtt 200  Q
    ||||||||||||| | |||||||| ||||||||||||||||||||||    
T  35352120 atgttggtgatttccgaaataatgaaattactttagaatcaaaagtt 35352166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 12857156 - 12857107
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 260  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  12857156 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 12857107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 14610696 - 14610647
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 260  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  14610696 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 14610647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 26051388 - 26051339
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 260  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  26051388 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 26051339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 26056501 - 26056452
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 260  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  26056501 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 26056452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 26060747 - 26060698
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 260  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  26060747 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 26060698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 26065860 - 26065811
Alignment:
Q  211 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 260  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  26065860 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 26065811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 343
Target Start/End: Original strand, 35352236 - 35352289
Alignment:
Q  290 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaacc 343  Q
    |||||||||||||||||| ||||| |||||||  ||| ||||||||| ||||||    
T  35352236 attgattcaagtgtatataatcataacctttgataaatgggtgcttaatgaacc 35352289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 4181329 - 4181389
Alignment:
Q  241 tttatatacattggaacatttggcaaaagggtgcttaatgaacctttgaattgattcaagt 301  Q
    ||||||||||| | | | ||||||||| ||||||||||||||||||   ||||||||||||    
T  4181329 tttatatacatagaatcttttggcaaaggggtgcttaatgaaccttaacattgattcaagt 4181389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 1820 - 1876
Alignment:
Q  155 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 211  Q
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T  1820 tgttggtgattttcaaaataatggaatcactttagaaccaaaagttgtatctcttca 1876  T

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