View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2060_low_12 (Length: 362)
Name: NF2060_low_12
Description: NF2060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2060_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 17 - 356
Target Start/End: Original strand, 3007232 - 3007571
Alignment:
| Q |
17 |
ccacttaaaagatttgttatgttcaatgtataactgagaagtaaacccattgtagatgcaatcagtgtaggattttcagatcttgcattttgtaagacag |
116 |
Q |
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| T |
3007232 |
ccacttaaaagatttgttatgttcaatgtataactgagaagtagacccattgtagatgcaatcagtgtaggattttcagatcttgcattttgtaagacag |
3007331 |
T |
|
| Q |
117 |
caaatgtcgctatcaaccaaatcatgaggcctcctaaactttctaaccttatggttagccaacggtttgaactaatattcacaagagtaaatcttatatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3007332 |
caaatgtcgctatcaaccaaatcatgaggcctcctaaactttctaaccttatggttagccaacggtttgaactaatattcacaagagtaaatcttatatt |
3007431 |
T |
|
| Q |
217 |
gttatccatgaatttcccattgatgtttgacatcctgtcgtacactttgtaagcacgaatgcttgacaaaccgtttaatgattctccaaaatgtgcataa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3007432 |
gttatccatgaatttcccattgatgtttgacatcctgtcgtacactttgtaagcacgaatgcttgacaaaccgttcaatgattctccaaaatgtgcataa |
3007531 |
T |
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| Q |
317 |
acaggagatcttgtaatggaatccatgcgcttcatctctc |
356 |
Q |
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| T |
3007532 |
acaggagatcttgtaatggaatccatgcgcttcacctctc |
3007571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 30 - 350
Target Start/End: Original strand, 3031327 - 3031647
Alignment:
| Q |
30 |
ttgttatgttcaatgtataactgagaagtaaacccattgtagatgcaatcagtgtaggattttcagatcttgcattttgtaagacagcaaatgtcgctat |
129 |
Q |
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|||||||||||||||| || |||||||||| |||||||||||||||| || |||||| |||||||||| |||||||||||| ||||||||||| ||||| |
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| T |
3031327 |
ttgttatgttcaatgtgtagctgagaagtagtcccattgtagatgcaaccaatgtagggttttcagatcgtgcattttgtaacacagcaaatgttgctat |
3031426 |
T |
|
| Q |
130 |
caaccaaatcatgaggcctcctaaactttctaaccttatggttagccaacggtttgaactaatattcacaagagtaaatcttatattgttatccatgaat |
229 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
3031427 |
caaccaaatcatgaggccacctaaactttctaaccttatggttaaccaacggtttgtactaatatttgcaagagtaaatctgatattgttatccatgaat |
3031526 |
T |
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| Q |
230 |
ttcccattgatgtttgacatcctgtcgtacactttgtaagcacgaatgcttgacaaaccgtttaatgattctccaaaatgtgcataaacaggagatcttg |
329 |
Q |
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| T |
3031527 |
tttccattgtcgtgtaatatcctgtcgtatgccttgtaagcacgaatgcttgacacaccattcattgattctccaaaatgtgcataaactggcgatcttg |
3031626 |
T |
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| Q |
330 |
taatggaatccatgcgcttca |
350 |
Q |
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| T |
3031627 |
taatggaatccatgcgcttca |
3031647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 341
Target Start/End: Original strand, 6102535 - 6102615
Alignment:
| Q |
261 |
ctttgtaagcacgaatgcttgacaaaccgtttaatgattctccaaaatgtgcataaacaggagatcttgtaatggaatcca |
341 |
Q |
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|||||||||||||||| |||| | ||| |||| || ||| ||||| |||||||||||||||||||| |||| ||||||| |
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| T |
6102535 |
ctttgtaagcacgaatcgttgatagaccatttagtgcttccccaaattgtgcataaacaggagatctgctaattgaatcca |
6102615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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