View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2060_low_13 (Length: 342)

Name: NF2060_low_13
Description: NF2060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2060_low_13
NF2060_low_13
[»] chr3 (1 HSPs)
chr3 (1-127)||(49359026-49359152)
[»] chr7 (3 HSPs)
chr7 (1-110)||(5888725-5888834)
chr7 (1-121)||(36934710-36934831)
chr7 (255-312)||(36934961-36935018)
[»] chr2 (1 HSPs)
chr2 (1-129)||(36593369-36593497)
[»] chr8 (4 HSPs)
chr8 (1-129)||(32918985-32919113)
chr8 (5-129)||(38148989-38149113)
chr8 (5-123)||(20519473-20519591)
chr8 (254-295)||(38148854-38148895)
[»] chr4 (2 HSPs)
chr4 (4-121)||(12888718-12888834)
chr4 (246-311)||(12888927-12888991)
[»] chr6 (2 HSPs)
chr6 (1-70)||(34501223-34501292)
chr6 (5-121)||(22697015-22697131)
[»] chr5 (1 HSPs)
chr5 (5-59)||(27631787-27631841)


Alignment Details
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 49359026 - 49359152
Alignment:
Q  1 ttcgaaacttcaccaaaaacagcatcacactaacaacaccaatactccaacatcaccaatagaaacatctcccttggtcgccaaatcaaaaaacaatgta 100  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  49359026 ttcgaaacttcaccaaaaacaacatcacactaacaacaccaacactccaacatcaccaacagaaacatctcccttggtcgccaaatcaaaaaacaatgta 49359125  T
Q  101 gatccagatccgaatatggttcagatc 127  Q
    |||||||||||||||||||||||||||    
T  49359126 gatccagatccgaatatggttcagatc 49359152  T

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Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 5888834 - 5888725
Alignment:
Q  1 ttcgaaacttcaccaaaaacagcatcacactaacaacaccaatactccaacatcaccaatagaaacatctcccttggtcgccaaatcaaaaaacaatgta 100  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||  ||||| ||||||||||||||||| ||||||||||| | |    
T  5888834 ttcgaaacttcaccaaaaacagcagcacactaacaacaccaacactccgacatcaccaaccgaaacgtctcccttggtcgccaattcaaaaaacaacgca 5888735  T
Q  101 gatccagatc 110  Q
     |||||||||    
T  5888734 aatccagatc 5888725  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 36934710 - 36934831
Alignment:
Q  1 ttcgaaacttcaccaaaaa-cagcatcacactaacaacaccaatactccaacatcaccaatagaaacatctcccttggtcgccaaatcaaaaaacaatgt 99  Q
    ||||||||||||||||||| || || | ||||||||||||||  ||||| ||||||||||  ||||| | ||||||| |||| || |||||||| ||  |    
T  36934710 ttcgaaacttcaccaaaaaacaacagcgcactaacaacaccaccactccgacatcaccaaccgaaacgtgtcccttgatcgcaaattcaaaaaagaacat 36934809  T
Q  100 agatccagatccgaatatggtt 121  Q
    ||||||| ||||| ||||||||    
T  36934810 agatccaaatccggatatggtt 36934831  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 36934961 - 36935018
Alignment:
Q  255 gaacaaactaagaaaacccaccacgatttatgttgctaaaatcgcccaaagtcaccga 312  Q
    |||||||||| ||||||||||| |||||| ||||||||||| | ||||||||||||||    
T  36934961 gaacaaactacgaaaacccaccgcgatttgtgttgctaaaagcacccaaagtcaccga 36935018  T

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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 36593369 - 36593497
Alignment:
Q  1 ttcgaaacttcaccaaaaacagcatcacactaacaacaccaatactccaacatcaccaatagaaacatctcccttggtcgccaaatcaaaaaacaatgta 100  Q
    ||||||||||||| |||||||| | |||||||||||||| |  |||| |||||||||||  ||||||||||||||||| ||||| ||| ||||||| | |    
T  36593369 ttcgaaacttcacaaaaaacagtagcacactaacaacactaccactctaacatcaccaaccgaaacatctcccttggttgccaattcataaaacaacgca 36593468  T
Q  101 gatccagatccgaatatggttcagatccg 129  Q
    |||||||||||| |||||||||| |||||    
T  36593469 gatccagatccggatatggttcatatccg 36593497  T

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Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 32919113 - 32918985
Alignment:
Q  1 ttcgaaacttcaccaaaaacagcatcacactaacaacaccaatactccaacatcaccaatagaaacatctcccttggtcgccaaatcaaaaaacaatgta 100  Q
    ||||||||||||| |||||||| | ||||||||||||||    |||| |||||||||||  ||||||||||||||||| ||||| ||| ||||||| | |    
T  32919113 ttcgaaacttcacaaaaaacagtagcacactaacaacactgccactctaacatcaccaaccgaaacatctcccttggttgccaattcataaaacaacgca 32919014  T
Q  101 gatccagatccgaatatggttcagatccg 129  Q
    |||| ||||||| |||||||||| |||||    
T  32919013 gatctagatccggatatggttcatatccg 32918985  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 38149113 - 38148989
Alignment:
Q  5 aaacttcaccaaaaacagcatcacactaacaacaccaatactccaacatcaccaatagaaacatctcccttggtcgccaaatcaaaaaacaatgtagatc 104  Q
    ||||||||| |||||||| | |||||||| ||||| |  | || |||||||||||  ||||||||||||||||| ||||| ||| ||||||| | ||| |    
T  38149113 aaacttcacaaaaaacagtagcacactaataacactaccattctaacatcaccaaccgaaacatctcccttggttgccaattcataaaacaacgcagaac 38149014  T
Q  105 cagatccgaatatggttcagatccg 129  Q
    |||||||| |||||||||| |||||    
T  38149013 cagatccggatatggttcatatccg 38148989  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 20519473 - 20519591
Alignment:
Q  5 aaacttcaccaaaaacagcatcacactaacaacaccaatactccaacatcaccaatagaaacatctcccttggtcgccaaatcaaaaaacaatgtagatc 104  Q
    ||||||||||||||||||   |||||||||||||| |  |||| |||||||||||  ||||||||| | ||||| ||||| |||||||||||   |||||    
T  20519473 aaacttcaccaaaaacagttgcacactaacaacactaccactctaacatcaccaaccgaaacatcttcgttggttgccaattcaaaaaacaacacagatc 20519572  T
Q  105 cagatccgaatatggttca 123  Q
    || ||||  ||||||||||    
T  20519573 caaatccagatatggttca 20519591  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 295
Target Start/End: Complemental strand, 38148895 - 38148854
Alignment:
Q  254 ggaacaaactaagaaaacccaccacgatttatgttgctaaaa 295  Q
    ||||||||||| ||||| ||| ||||||||||||||||||||    
T  38148895 ggaacaaactatgaaaatccatcacgatttatgttgctaaaa 38148854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 121
Target Start/End: Original strand, 12888718 - 12888834
Alignment:
Q  4 gaaacttcaccaaaaacagcatcacactaacaacaccaatactccaacatcaccaatagaaacatctcccttggtcgccaaatcaaaaaacaatgtagat 103  Q
    ||||||||||||||||||||| |||| |||||||| ||  ||| ||||||||||||  ||||||||||||||| |  |||| |||||||| ||  || ||    
T  12888718 gaaacttcaccaaaaacagcagcacattaacaacaacaccactacaacatcaccaaccgaaacatctcccttgattaccaattcaaaaaataacata-at 12888816  T
Q  104 ccagatccgaatatggtt 121  Q
    ||||||||| ||||||||    
T  12888817 ccagatccggatatggtt 12888834  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 311
Target Start/End: Original strand, 12888927 - 12888991
Alignment:
Q  246 agccaccgggaacaaactaagaaaacccaccacgatttatgttgctaaaatcgcccaaagtcaccg 311  Q
    ||||||| ||||||| ||| ||||||| |||||||||||||||| ||||| | |||||||||||||    
T  12888927 agccaccaggaacaacctatgaaaacc-accacgatttatgttgttaaaacctcccaaagtcaccg 12888991  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 34501292 - 34501223
Alignment:
Q  1 ttcgaaacttcaccaaaaacagcatcacactaacaacaccaatactccaacatcaccaatagaaacatct 70  Q
    ||||||||||||||||||| || | ||||||||||||||||  ||||||||||||||||  |||||||||    
T  34501292 ttcgaaacttcaccaaaaatagtagcacactaacaacaccaccactccaacatcaccaaccgaaacatct 34501223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 22697015 - 22697131
Alignment:
Q  5 aaacttcaccaaaaacagcatcacactaa-caacaccaatactccaacatcaccaatagaaacatctcccttggtcgccaaatcaaaaaacaatgtagat 103  Q
    |||||||||||||||||| | | |||||| ||||||||  ||| |||||||||||   ||||| ||||||||||||  ||| || |||||||| | ||||    
T  22697015 aaacttcaccaaaaacagtagctcactaaacaacaccaccacttcaacatcaccagccgaaacgtctcccttggtcatcaattc-aaaaacaacgcagat 22697113  T
Q  104 ccagatccgaatatggtt 121  Q
    ||||||||| ||||||||    
T  22697114 ccagatccggatatggtt 22697131  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 27631841 - 27631787
Alignment:
Q  5 aaacttcaccaaaaacagcatcacactaacaacaccaatactccaacatcaccaa 59  Q
    |||| |||||||||| |||| |||||||||||||||| |||||||||||||||||    
T  27631841 aaacatcaccaaaaatagcagcacactaacaacaccactactccaacatcaccaa 27631787  T

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