View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2060_low_16 (Length: 326)
Name: NF2060_low_16
Description: NF2060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2060_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 34615928 - 34616225
Alignment:
| Q |
18 |
atacatactcaacaaaagaaaaatattttaaggaacccaagcttgtctaaagtcaacacagtatacatatttagctgaactaccactacctttttcggtg |
117 |
Q |
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| T |
34615928 |
atacatactcaacaaaagaaaaatattttaaggaacccaagcttgtctaaagtcaacacagtatacatatttagctgaactaccactacctttttcggtg |
34616027 |
T |
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| Q |
118 |
ttttacacagtttgtaggtaaggaaggtagccacacaccacagtacatattgcagaaccaaccaatccacccccaacagtattttcacaaatagtattca |
217 |
Q |
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| T |
34616028 |
ttttacacagtttgtaggtaaggaaggtagccacacaccacagtacatattgcagaaccaaccaatccacccccaacagtattttcacaattagtattca |
34616127 |
T |
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| Q |
218 |
aataaggaatgtctgcataaatcatcaacaaaagggtgttaccattttttatcacaaaaatctgagagaacactactaagcaaataactagtattcat |
315 |
Q |
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| T |
34616128 |
aataaggaatgtctgcataaagcatcaacaaaagggtgttaccattttttatcacaaaaatctgagagaacactactaagcaaataactagtattcat |
34616225 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 188
Target Start/End: Original strand, 2476172 - 2476269
Alignment:
| Q |
91 |
gctgaactaccactacctttttcggtgttttacacagtttgtaggtaaggaaggtagccacacaccacagtacatattgcagaaccaaccaatccacc |
188 |
Q |
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||||||||||||||| |||||| | || |||| |||||||||||||||||||| ||||| |||| ||||| | ||| ||||||||||||||||| |
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| T |
2476172 |
gctgaactaccactatctttttgagatttacacacggtttgtaggtaaggaaggtaaccacataccaaagtacctcttgtggaaccaaccaatccacc |
2476269 |
T |
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