View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2060_low_19 (Length: 289)

Name: NF2060_low_19
Description: NF2060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2060_low_19
NF2060_low_19
[»] chr4 (1 HSPs)
chr4 (1-289)||(43775120-43775407)


Alignment Details
Target: chr4 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 43775120 - 43775407
Alignment:
Q  1 aagttttgctgaatcatggagaagcactcaggaagacagtactcaaccatggccctatttgaatgaagctctcacaaaattccaggcatgtaaatgcctc 100  Q
    |||||||| ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||  | |||||||||||||||||||||||     
T  43775120 aagttttggtgaatcatggagaagcattcaggcagacagtactgaaccatggccctatttgaatgaagctcttgcgaaattccaggcatgtaaatgccta 43775219  T
Q  101 ttcattatattgactttagctagagcaattgttgaatttacattaaataagtgtataatattcacaattgctttgaataannnnnnnnnncttctggcaa 200  Q
    | | |||||||| |||||||||||  ||| ||||||||||||||||| |||||||||||||||||||||||||  |||||           || || ||     
T  43775220 tgctttatattggctttagctagaataatagttgaatttacattaaagaagtgtataatattcacaattgcttcaaataaattttttct--ttttgacac 43775317  T
Q  201 cctttcacatgatgact-tttcactcaaacccccattctatgttcctgtcaaatctccaggaccctgcagaggctgataagttgttgaaa 289  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43775318 cctttcacatgatgactgtttcactcaaacccccattttatgttcctgtcaaatctccaggaccctgcagaggctgataagttgttgaaa 43775407  T

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