View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2060_low_20 (Length: 276)
Name: NF2060_low_20
Description: NF2060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2060_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 7e-92; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 26 - 260
Target Start/End: Original strand, 11859671 - 11859905
Alignment:
| Q |
26 |
gtggtggtggtggtgacaactggattccagaagcaatggaaatgcttaagtttatctattacgacaattttcccacttatcagaagttatgctttgcata |
125 |
Q |
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| T |
11859671 |
gtggtggtcgtggtgacaactggattccgaaagcattagaaacgcttaagtttatctattacgacaaccttcccacttatcagaagttatgcttcgcata |
11859770 |
T |
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| Q |
126 |
ttgttcattgtttccagaagattatttgattgatgcagagagattaattcaactctggactgctgaagggtttcttgtcaacccagaacaacaatttggt |
225 |
Q |
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| T |
11859771 |
ttgttcattgtttccagaagattatttgattgatgcagagagattgattcaactctggacggctgaagggtttcttatcaatccagaacaacaatttggt |
11859870 |
T |
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| Q |
226 |
caagcttgtttcgaagacttcgttcctctggtttt |
260 |
Q |
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| T |
11859871 |
caagcttgtttcaaagactttgttcctttggtttt |
11859905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 11827528 - 11827770
Alignment:
| Q |
18 |
gaagcaaagtggtggtggtggtgacaactggattccagaagcaatggaaatgcttaagtttatctattacgacaattttcccacttatcagaagttatgc |
117 |
Q |
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| T |
11827528 |
gaagcatagtggtgttggtggtgaagaatggattcgggaagcactagaaaaggtgaagcttatctattacgacgatcttcccacttatcagaaattatgc |
11827627 |
T |
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| Q |
118 |
tttgcatattgttcattgtttccagaagattatttgattgatgcagagagattaattcaactctggactgctgaagggtttcttgtcaacccagaacaac |
217 |
Q |
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| T |
11827628 |
tttgcatattgttcattgtttccagaagattatttgattgatgcagagagattgattcaactctggactggtgaagggtttcttatcaatccagaacaac |
11827727 |
T |
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| Q |
218 |
aatttggtcaagcttgtttcgaagacttcgttcctctggtttt |
260 |
Q |
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| T |
11827728 |
aatttggtcatgcttgtttcgaagactttgttcctttggtttt |
11827770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 78 - 200
Target Start/End: Original strand, 12038482 - 12038604
Alignment:
| Q |
78 |
tatctattacgacaattttcccacttatcagaagttatgctttgcatattgttcattgtttccagaagattatttgattgatgcagagagattaattcaa |
177 |
Q |
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| T |
12038482 |
tatctattacgaagatcttcccacgtatcagaagttgtgctttgcatattgttcattgtttccagaagattatttaattgatgccgagagattaattcaa |
12038581 |
T |
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| Q |
178 |
ctctggactgctgaagggtttct |
200 |
Q |
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| T |
12038582 |
ctttggacggctgaaggatttct |
12038604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 109 - 260
Target Start/End: Complemental strand, 11902770 - 11902619
Alignment:
| Q |
109 |
aagttatgctttgcatattgttcattgtttccagaagattatttgattgatgcagagagattaattcaactctggactgctgaagggtttcttgtcaacc |
208 |
Q |
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| T |
11902770 |
aagttatgttttgcatattgttcattgtttccaagagattatttgattgatgctgagagattaattgaactctggactgctgaaggatttctcaccattc |
11902671 |
T |
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| Q |
209 |
cagaacaacaatttggtcaagcttgtttcgaagacttcgttcctctggtttt |
260 |
Q |
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| T |
11902670 |
cacaacaacaattttgtcgaccttgtttcaatgactttgttccgttggtttt |
11902619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 11731429 - 11731508
Alignment:
| Q |
115 |
tgctttgcatattgttcattgtttccagaagattatttgattgatgcagagagattaattcaactctggactgctgaagg |
194 |
Q |
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| T |
11731429 |
tgctttgcattttgttcattgtttccagaacatcatttgattgatgccgagagattaattcaactttggtttgctgaagg |
11731508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 11975068 - 11974974
Alignment:
| Q |
105 |
tcagaagttatgctttgcatattgttcattgtttccagaagattatttgattgatgcagagagattaattcaactctggactgctgaagggtttc |
199 |
Q |
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| T |
11975068 |
tcagaagttttgttttgaattttgttcattgtttcctcaagatcatttgattgatgtcgagagattaattcatctcttgacagcagaaggatttc |
11974974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 12038627 - 12038680
Alignment:
| Q |
208 |
ccagaacaacaatttggtcaagcttgtttcgaagacttcgttcctctggttttt |
261 |
Q |
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| T |
12038627 |
ccagaacaacaatttggtcgagcttgtttcaacgactttgttcctttggttttt |
12038680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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