View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2060_low_22 (Length: 250)
Name: NF2060_low_22
Description: NF2060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2060_low_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 490368 - 490532
Alignment:
| Q |
1 |
acagatttgatcatctaataattgtttgtatgaaaatgattgtgtnnnnnnnccttcatttcataaaaggttattttggaaattcaatttcccaagtagt |
100 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||| |||||| ||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
490368 |
acagatttggtcatctaataattgtttatatgaaaatggttgtgtaaaaaaacct-catttcataaaagattattttggaaattcaatttcccaagtagt |
490466 |
T |
|
| Q |
101 |
tatgaagtttttctacacgaagaaatcaaaagatgtcatcaaaaattaaaaacacccaaaacatat |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
490467 |
tatgaagtttttctacacgaagaaatcaaaagatgtcatcaaaaattaaaaacacccaaaacatat |
490532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 31696185 - 31696236
Alignment:
| Q |
142 |
aaaattaaaaacacccaaaacatatcccagagttgaatttagtacgtctata |
193 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||| |||||| |
|
|
| T |
31696185 |
aaaattaaaaacacccaaaacatatcacatggttgaatttagtacctctata |
31696236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 31696086 - 31696141
Alignment:
| Q |
56 |
tcatttcataaaaggttattttggaaattcaatttcccaagtagttatgaagtttt |
111 |
Q |
| |
|
|||||| | ||||| |||||||||||||||||||| || |||||||| |||||||| |
|
|
| T |
31696086 |
tcatttaacaaaagattattttggaaattcaattttcctagtagttacgaagtttt |
31696141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University