View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2060_low_23 (Length: 246)
Name: NF2060_low_23
Description: NF2060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2060_low_23 |
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| [»] scaffold0370 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 37975315 - 37975084
Alignment:
| Q |
1 |
ctacagtagagtgtcaagtacggtggtttttgggtttaaactacactaagaaatgcttacataaaacataaatgtaagcgataannnnnnnnnnnnnnnn |
100 |
Q |
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| T |
37975315 |
ctacaatagagtgttaagtacggtggtttttgggtttaaactacactaagaaatgcataaataaaacataaatgtaagcgataatttttttttttttttt |
37975216 |
T |
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| Q |
101 |
n-gcaaaataagcttgttgattgattgaatatgttaattagaatgtctgaacaaaatatttatagtgtaattattgtctagtagccaaacaatattgcct |
199 |
Q |
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| T |
37975215 |
ttgcgaaataagcttgttgattgattgaatatgttaattagaatgtctgaacaaaatatttatagtgtaattattgtctagtagccaaacaatattgcct |
37975116 |
T |
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| Q |
200 |
atatgcttaaacctccattcagctaatttcac |
231 |
Q |
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| T |
37975115 |
atatgcttaaacctccattcagctaatttcac |
37975084 |
T |
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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 188
Target Start/End: Original strand, 19121678 - 19121763
Alignment:
| Q |
104 |
aaaataagcttgtt-gattgattgaatatgttaattagaatgtctgaacaaaatatttatagtgtaattattgtctagtagccaaa |
188 |
Q |
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| T |
19121678 |
aaaataagcttgtttgattgattggatatgttaattacaatgtatgcacaaaatatttatagtgtcattatttcctattagccaaa |
19121763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 27843888 - 27843827
Alignment:
| Q |
104 |
aaaataagcttgtt-gattgattgaatatgttaattagaatgtctgaacaaaatatttatag |
164 |
Q |
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| T |
27843888 |
aaaataaacttgtttgattgattgaatgtgttaattacaatgtatgaacatagtatttatag |
27843827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 21255518 - 21255443
Alignment:
| Q |
116 |
ttgattgattgaatatgttaattagaatgtctgaacaaaatatttatagtgtaattattgtctagtagccaaacaa |
191 |
Q |
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| T |
21255518 |
ttgattgattgagtgcgttaattacaatgtatgaatataatatttataatgtaactattgtctattagacaaacaa |
21255443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 25592710 - 25592662
Alignment:
| Q |
136 |
attagaatgtctgaacaaaatatttatagtgtaattattgtctagtagc |
184 |
Q |
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| T |
25592710 |
attacaatgtatgaacaaagtatttatagtgtaactattgtctactagc |
25592662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 31294934 - 31294872
Alignment:
| Q |
104 |
aaaataagcttgtt-gattgattgaatatgttaattagaatgtctgaacaaaatatttatagt |
165 |
Q |
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| T |
31294934 |
aaaataagcttgtttgattgattgtatgtgttatttaaaatgtatgaataaaatatttatagt |
31294872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 8913 - 8962
Alignment:
| Q |
119 |
attgattgaatatgttaattagaatgtctgaacaaaatatttatagtgta |
168 |
Q |
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| T |
8913 |
attgattggatgtgttaattacaatgtatgaacaaactatttatagtgta |
8962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 14203 - 14252
Alignment:
| Q |
119 |
attgattgaatatgttaattagaatgtctgaacaaaatatttatagtgta |
168 |
Q |
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| T |
14203 |
attgattggatgtgttaattacaatgtatgaacaaactatttatagtgta |
14252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 8821706 - 8821781
Alignment:
| Q |
104 |
aaaataagcttgtt-gattgattgaatatgttaattagaatgtctgaacaaaatatttatagtgtaattattgtcta |
179 |
Q |
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| T |
8821706 |
aaaataagcttgtttgattgattggatgtgtaaattacaat-tatcaacataatatttatagtgtaactattgtcta |
8821781 |
T |
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