View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2060_low_24 (Length: 244)
Name: NF2060_low_24
Description: NF2060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2060_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 33521892 - 33521657
Alignment:
| Q |
1 |
attcagatcttggaagaatggttcagaggttgcaaaaggtaaatttcaattcctataagcttaaaatatttatttcttatctttgttgtattttgacaac |
100 |
Q |
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| T |
33521892 |
attcagatcttggaagaatggttcagaggttgcaaaaggtaaatttctattcctataagcttaaattttttatttcttatctttgttgtattttgacaac |
33521793 |
T |
|
| Q |
101 |
ttttacgacaattaattaaggtaacgcataatttgtgca--------nnnnnnnngtagctgaatgtgtagtagtagtttgaaaatttcacaactacaag |
192 |
Q |
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| T |
33521792 |
ttttacgacaattaattaaggtaacgcataatttgtgcattttttttttttttttgtagctgaatatgtagtagtagtttgaaaatttcacaactacaag |
33521693 |
T |
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| Q |
193 |
tattttcaattttcagttgataaatgtttaaatacc |
228 |
Q |
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| T |
33521692 |
tattttcaattttcagttgataaatgtttaaatacc |
33521657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 55448179 - 55448139
Alignment:
| Q |
5 |
agatcttggaagaatggttcagaggttgcaaaaggtaaatt |
45 |
Q |
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| T |
55448179 |
agatcttggaataatggttcagaggttgcaaaaggtaaatt |
55448139 |
T |
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