View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2060_low_25 (Length: 241)
Name: NF2060_low_25
Description: NF2060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2060_low_25 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 25542104 - 25541880
Alignment:
| Q |
1 |
tgttgttgattttttgtatggattgttgatacttgattgcaagtttctattttagatatgatgtggttgtttctagtagttgagtttgtgaaatggatac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25542104 |
tgttgttgattttttgtatggattgttgatacttgattgcaagtttctattttagatatgatgtggttgtttctagtagttgagtttgtgaaatggatac |
25542005 |
T |
|
| Q |
101 |
atttattgtaaccttgacctttgatgaaattttatcggttggaaatatatttgtgtagtttatgatataatggtgttgattttagatacattgtgaccgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
25542004 |
atttattgtaaccttgacctttgatgaaattttatcggttggaaatatatttgtgtagtttatgatataatggtgttgattttagatacattgtgactgt |
25541905 |
T |
|
| Q |
201 |
aggattgctgattgtagttctaact |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
25541904 |
aggattgctgattgtagttctaact |
25541880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 11978992 - 11978944
Alignment:
| Q |
124 |
atgaaattttatcggttggaaatatatttgtgtagtttatgatataatg |
172 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
11978992 |
atgaaattttatcggttgtaaattgatttgtgtagtttatgatataatg |
11978944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 140
Target Start/End: Complemental strand, 11980375 - 11980274
Alignment:
| Q |
33 |
ttgattgcaagtttctattttagatatgatgtggttgtttctagtagttgagtttgtgaaatggatacatttattgtaaccttgacctttgatgaaattt |
132 |
Q |
| |
|
|||||||| ||||| |||| ||||||||||| ||||||||||| |||||| |||| |||| ||||| ||||||||||| || |||||||||||| |
|
|
| T |
11980375 |
ttgattgcgagtttatattatagatatgatgcggttgtttctat------agtttgggaaagggattcatttgttgtaaccttgtccattgatgaaattt |
11980282 |
T |
|
| Q |
133 |
tatcggtt |
140 |
Q |
| |
|
||| |||| |
|
|
| T |
11980281 |
tataggtt |
11980274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 11980732 - 11980634
Alignment:
| Q |
1 |
tgttgttgattttttgtatggattgttgatacttgattgcaagtttctattttagatatgatgtggttgtttc---tagtagttgagtttgtgaaatgga |
97 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |||| |||| ||||||| |||||||| ||||||||||| ||| |||||||| |
|
|
| T |
11980732 |
tgttgttgattttttgtatggattgt-------tgattgcaagtttatattatagagatgatgttgttgtttctaatagtagttgag-ttgggaaatgga |
11980641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University