View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2060_low_3 (Length: 601)

Name: NF2060_low_3
Description: NF2060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2060_low_3
NF2060_low_3
[»] chr1 (10 HSPs)
chr1 (15-601)||(32167156-32167738)
chr1 (15-128)||(32156719-32156832)
chr1 (505-600)||(32164765-32164860)
chr1 (500-601)||(27359364-27359465)
chr1 (470-601)||(32156985-32157116)
chr1 (470-538)||(27348471-27348539)
chr1 (470-538)||(27265171-27265239)
chr1 (66-122)||(27321585-27321641)
chr1 (470-538)||(27321843-27321911)
chr1 (15-128)||(32164485-32164598)
[»] chr4 (1 HSPs)
chr4 (500-601)||(44291309-44291410)


Alignment Details
Target: chr1 (Bit Score: 517; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 15 - 601
Target Start/End: Original strand, 32167156 - 32167738
Alignment:
Q  15 tggaggagcgatccctgtaacaattatccccatcccgggacatttaacaactgcatcaaattgtggttgtacttctgtgacattttctccagacgtgaca 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32167156 tggaggagcgatccctgtaacaattatccccatcccgggacatttaacaattgcatcaaattgtggttgtacttctgtgacattttctccagatgtgaca 32167255  T
Q  115 agaacctaggagaagtagtaaacaaaaagttgatatttggcatgctagagtaaattagcatgagatatagatatttactactcctttccccaataatcaa 214  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  32167256 agaacctaggagaagtagtaaacaaacagttgatatttggcatgttagagtaaagtagcatgagatatagatatttactactcctttcctcaataatcaa 32167355  T
Q  215 gcaggttcacagatattaaataacaataacatatggtcttcagcatactctcaaggatatgttgttttcttgaaataacaataactaagatatcattcat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32167356 gcaggttcacagatattaaataacaataacatatggtcttcagcatactctcaaggatatgttgttttcttgaaataacaataactaagatatcattcat 32167455  T
Q  315 gttatctatacaaagtaactaccaattttggtgggactttgcttatacatgtttactattaacagcacnnnnnnncttcaaatcttacggctaccataac 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       |||||||||||||||||||||||||    
T  32167456 gttatctatacaaagtaactaccaattttggtgggactttgcttatacaagtttactattaacagcactttttttcttcaaatcttacggctaccataac 32167555  T
Q  415 cactaattaatatctgcttgcttatcaaacaataaataaatgtggaatagagaagaggaattacaagtaaattatctccatttgttgtcctctttatatc 514  Q
    ||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32167556 cactaattaatatc----tgcttatcaaacaataaataaatgtggaatagagaagaggaattacaagtaaattatctccatttgttgtcctctttatatc 32167651  T
Q  515 aataatggaagcaccattcaatgctccagaaatgagtgaagtgtcatcagaattgaattctgcaatagggtcagcaggaaaatccaa 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32167652 aataatggaagcaccattcaatgctccagaaatgagtgaagtgtcattagaattgaattctgcaatagggtcagcaggaaaatccaa 32167738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 32156719 - 32156832
Alignment:
Q  15 tggaggagcgatccctgtaacaattatccccatcccgggacatttaacaactgcatcaaattgtggttgtacttctgtgacattttctccagacgtgaca 114  Q
    ||||||||||||||||||||||||||||||| | || ||| |||| |||| |||||||||||||||||| |||||| ||||||| | |||||| ||||||    
T  32156719 tggaggagcgatccctgtaacaattatcccccttccaggagattttacaattgcatcaaattgtggttgcacttctatgacattctttccagatgtgaca 32156818  T
Q  115 agaacctaggagaa 128  Q
    | ||||||||||||    
T  32156819 acaacctaggagaa 32156832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 505 - 600
Target Start/End: Original strand, 32164765 - 32164860
Alignment:
Q  505 tctttatatcaataatggaagcaccattcaatgctccagaaatgagtgaagtgtcatcagaattgaattctgcaatagggtcagcaggaaaatcca 600  Q
    ||||||||||||| ||||||||||||||   |||  |||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||    
T  32164765 tctttatatcaattatggaagcaccatttgttgcctcagaaatgagtgaagtatcatcagaattgaattctgcaacagggtaagcaggaaaatcca 32164860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 500 - 601
Target Start/End: Complemental strand, 27359465 - 27359364
Alignment:
Q  500 tgtcctctttatatcaataatggaagcaccattcaatgctccagaaatgagtgaagtgtcatcagaattgaattctgcaatagggtcagcaggaaaatcc 599  Q
    |||||||||||||||||| || |||||||||  ||||||| |||||||||||||||| |||||| |||||| ||| | |||||||||  | |||||||||    
T  27359465 tgtcctctttatatcaattatagaagcaccacccaatgcttcagaaatgagtgaagtatcatcaaaattgagttcagtaatagggtccactggaaaatcc 27359366  T
Q  600 aa 601  Q
    ||    
T  27359365 aa 27359364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 470 - 601
Target Start/End: Original strand, 32156985 - 32157116
Alignment:
Q  470 aggaattacaagtaaattatctccatttgttgtcctctttatatcaataatggaagcaccattcaatgctccagaaatgagtgaagtgtcatcagaattg 569  Q
    ||||||||||||||| | ||||  | ||  |||||||||||||||||| |||||||| |||| |||||||  |||||||||  ||||||| ||  | |||    
T  32156985 aggaattacaagtaagtcatcttgaatttgtgtcctctttatatcaattatggaagctccatccaatgcttgagaaatgagccaagtgtcgtcgaatttg 32157084  T
Q  570 aattctgcaatagggtcagcaggaaaatccaa 601  Q
    || ||||  |||||||||||||||||||||||    
T  32157085 aactctgtgatagggtcagcaggaaaatccaa 32157116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 470 - 538
Target Start/End: Original strand, 27348471 - 27348539
Alignment:
Q  470 aggaattacaagtaaattatctccatttgttgtcctctttatatcaataatggaagcaccattcaatgc 538  Q
    ||||||||||||||||| |||| ||  |  ||||||||| |||||||||||||||||||||||||||||    
T  27348471 aggaattacaagtaaatcatctgcaaattctgtcctcttcatatcaataatggaagcaccattcaatgc 27348539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 470 - 538
Target Start/End: Original strand, 27265171 - 27265239
Alignment:
Q  470 aggaattacaagtaaattatctccatttgttgtcctctttatatcaataatggaagcaccattcaatgc 538  Q
    ||||||||||||||||| |||| ||  |  ||| ||||| |||||||||||||||||||||||||||||    
T  27265171 aggaattacaagtaaatcatctgcaaattctgttctcttcatatcaataatggaagcaccattcaatgc 27265239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 27321585 - 27321641
Alignment:
Q  66 tgcatcaaattgtggttgtacttctgtgacattttctccagacgtgacaagaaccta 122  Q
    |||||||||||||||||||||||||  |||||||| |||||| ||||||| ||||||    
T  27321585 tgcatcaaattgtggttgtacttctaagacattttttccagatgtgacaacaaccta 27321641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 470 - 538
Target Start/End: Original strand, 27321843 - 27321911
Alignment:
Q  470 aggaattacaagtaaattatctccatttgttgtcctctttatatcaataatggaagcaccattcaatgc 538  Q
    ||||||||||||||||| |||| ||  |  ||| ||||| |||||||||||||||||||||||||||||    
T  27321843 aggaattacaagtaaatcatctgcaaattctgttctcttcatatcaataatggaagcaccattcaatgc 27321911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 32164485 - 32164598
Alignment:
Q  15 tggaggagcgatccctgtaacaatta-tccccatcccgggacatttaacaactgcatcaaattgtggttgtacttctgtgacattttctccagacgtgac 113  Q
    ||||||||| ||||| |||||||||| ||||| ||| || | ||||| ||| |||||| | |||||| |||| |||||||||||||| |||||| | |||    
T  32164485 tggaggagcaatcccggtaacaattaatccccttccaggta-atttagcaattgcatccagttgtggctgtatttctgtgacattttttccagatgcgac 32164583  T
Q  114 aagaacctaggagaa 128  Q
     | ||||||| ||||    
T  32164584 cacaacctagaagaa 32164598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 500 - 601
Target Start/End: Complemental strand, 44291410 - 44291309
Alignment:
Q  500 tgtcctctttatatcaataatggaagcaccattcaatgctccagaaatgagtgaagtgtcatcagaattgaattctgcaatagggtcagcaggaaaatcc 599  Q
    ||||||||| | ||||| |||||||||  || ||||| |||||||||| |||||| | |||||| | || | ||||| ||| ||||||||||||||||||    
T  44291410 tgtcctcttcacatcaacaatggaagcctcactcaatactccagaaataagtgaaatatcatcaaattttagttctgaaattgggtcagcaggaaaatcc 44291311  T
Q  600 aa 601  Q
    ||    
T  44291310 aa 44291309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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