View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2060_low_31 (Length: 218)
Name: NF2060_low_31
Description: NF2060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2060_low_31 |
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| [»] scaffold0219 (1 HSPs) |
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Alignment Details
Target: scaffold0219 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 11047 - 10864
Alignment:
| Q |
19 |
gtccatgattctgaacattggattgcctttgtgtgtaagggttgaaatcatgttcccactttgagaggcacaagaaatctggatgaagagagatcatcaa |
118 |
Q |
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| T |
11047 |
gtccatgattctgaacattggattgcctttgtgtgtaagggttgaaatcatgttcccactttgagaggcataagaaatctggatgaagagagatcatcaa |
10948 |
T |
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| Q |
119 |
cctccattggccaaaatccttctaaactgtctgcaacttcgacgagagatcacaagaggttaaagatttgtttcccttattcat |
202 |
Q |
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| T |
10947 |
cctccattggccaaaatccttctaaactgtctgcaacttcgatgagagatcacaagaggttaaagatttgtttcccttattcat |
10864 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 169
Target Start/End: Complemental strand, 15698022 - 15697967
Alignment:
| Q |
114 |
atcaacctccattggccaaaatccttctaaactgtctgcaacttcgacgagagatc |
169 |
Q |
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| T |
15698022 |
atcaacctccattgtccaaaatccttccaaattgtttgcagcttcgacgagagatc |
15697967 |
T |
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