View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2060_low_33 (Length: 208)
Name: NF2060_low_33
Description: NF2060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2060_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 1684799 - 1684617
Alignment:
| Q |
13 |
tcacttgttaatgtaaccatttatattcttctgctactcactacnnnnnnn--ctctaatttcagaaggatatggggttttggcttctccttgaggccat |
110 |
Q |
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| T |
1684799 |
tcacttgttaatgtaaccatttatattcttctgctactcactactttttttttctctaatttcagaaggatatggggttttggcttctccttgaggctat |
1684700 |
T |
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| Q |
111 |
tttctttgctgccattgttctgataacaatgttggtatttcatggcactaccggcaggtctttaattgttggtattgtctgtg |
193 |
Q |
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| T |
1684699 |
tttctttgctgccattgttctgataacaatgttggtatttcatggcactaccggcaggtctttaattgttggtattgtttgtg |
1684617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 1695110 - 1695051
Alignment:
| Q |
123 |
cattgttctgataacaatgttggtatttcatggcactaccggcaggtctttaattgttgg |
182 |
Q |
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| T |
1695110 |
cattgttctgataacaatgttggcattacatggcactaccaagaggtctttaattgttgg |
1695051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 1700245 - 1700179
Alignment:
| Q |
94 |
cttctccttgaggccattttctttgctgccattgttctgataacaatgttggtatttcatggcacta |
160 |
Q |
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| T |
1700245 |
cttctcatcgaggctattttctttgctgtcattgttctaataacaatgttggcacttcatggcacta |
1700179 |
T |
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