View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2060_low_7 (Length: 438)
Name: NF2060_low_7
Description: NF2060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2060_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 12 - 420
Target Start/End: Original strand, 34342062 - 34342470
Alignment:
| Q |
12 |
aagaacgaaccgaaactggaactcttcctgtgaagtgattgtctgcaacagaaagagtttccagattgggaaaatacctaaggaaattcaagtttccaga |
111 |
Q |
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| T |
34342062 |
aagaacgaaccgaaactggaactcttcctgtgaagtgattgtctgcaacagaaagagtttccagattgggaaaatacctaaggaaattcaagtttccaga |
34342161 |
T |
|
| Q |
112 |
cagtttatttccagagatatcaagaaagcgaagacgaatgagagaagagaattcagaaggaacttcaccagagaaaagattattagcaaggttcagaatc |
211 |
Q |
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| T |
34342162 |
aagtttatttccagagatatcaagaaagcgaagacgaatgagagaagagaattcagaaggaacttcaccagagaaaagattattagcaaggttcagaaac |
34342261 |
T |
|
| Q |
212 |
tcaagctttctgcagtcaactatagaggttggtatttggtcaacgagtttgttgtctgaaagagagatttctttgagctctgtgagttttccaatggttg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34342262 |
tcaagctttctgcagtcaactatagaggttggtatttggtcaacgagtttgttgtctgaaagagagatttctttcagctctgtgagttttccaatggttg |
34342361 |
T |
|
| Q |
312 |
gtgaaagtatgccactgagttttcttgatttgaaaacaagttttgttactctgagtgcatagctttcattgttggtgagtcttctctcacagaacacacc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34342362 |
gtgaaagtatgccactgagttttcttgatttgaaaacaagttttgttactctgagtgcatagctttcattgttggtgagtcttctctcacagaacacacc |
34342461 |
T |
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| Q |
412 |
ttccttgtt |
420 |
Q |
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| T |
34342462 |
ttccttgtt |
34342470 |
T |
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