View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20610_high_10 (Length: 315)
Name: NF20610_high_10
Description: NF20610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20610_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 17 - 300
Target Start/End: Original strand, 255151 - 255434
Alignment:
| Q |
17 |
aaagaagaggatatccaaagaacatagccaccgttgtgagggaaagtagtggcaagttcagcggtgacgagagcttcagggacgctccaaatgagaggga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
255151 |
aaagaagaggatatccaaagaacatagccaccgttgtgagggaaagcagtggcaagttcggcggtgacgagagcttcagggacgctccaaatgagaggga |
255250 |
T |
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| Q |
117 |
aaaagaagaaaccgagtaaggatagaagaggaccaccgccggttctaacagaatcctcaactccgaatggaccgccggagacttcgtagaagattagagc |
216 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
255251 |
aaaggaagaaaccgagtaaggatagaagaggaccaccgccggtactaacagaatcctcaactccgaatggaccgccggagacttcgtagaagattagagc |
255350 |
T |
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| Q |
217 |
aataagaggtaataaggttagttttggatttgatttggcatcatccatcaatagaataaaggtaccaattcggatgagattaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
255351 |
aataagaggtaataaggttagttttggatttgatttggcatcatccatcaatagaataaaggtaccaattcggacgagattaac |
255434 |
T |
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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 21244366 - 21244444
Alignment:
| Q |
122 |
aagaaaccgagtaaggatagaagaggaccaccgccggttctaacagaatcctcaactccgaatggaccgccggagactt |
200 |
Q |
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||||| |||||||||||||||||||||||||| |||| |||| ||||||| ||||||||||| |||| ||||||||| |
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| T |
21244366 |
aagaagccgagtaaggatagaagaggaccaccaccggctctatcagaatcttcaactccgaagagaccatcggagactt |
21244444 |
T |
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