View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20610_high_16 (Length: 251)

Name: NF20610_high_16
Description: NF20610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20610_high_16
NF20610_high_16
[»] chr6 (8 HSPs)
chr6 (124-243)||(2208798-2208926)
chr6 (35-88)||(4803157-4803210)
chr6 (35-91)||(10008191-10008248)
chr6 (35-119)||(17506235-17506321)
chr6 (38-92)||(19418592-19418647)
chr6 (54-118)||(22297654-22297719)
chr6 (53-92)||(10252963-10253003)
chr6 (35-91)||(21809864-21809920)
[»] scaffold0286 (1 HSPs)
scaffold0286 (124-243)||(898-1027)
[»] chr5 (9 HSPs)
chr5 (35-119)||(7609598-7609682)
chr5 (35-119)||(2611207-2611291)
chr5 (35-125)||(14863301-14863391)
chr5 (38-120)||(31619290-31619371)
chr5 (35-91)||(21052686-21052742)
chr5 (36-121)||(35185227-35185310)
chr5 (35-119)||(11320097-11320180)
chr5 (35-91)||(6102827-6102883)
chr5 (35-91)||(1447612-1447669)
[»] chr3 (13 HSPs)
chr3 (35-121)||(44291288-44291374)
chr3 (35-119)||(43862912-43862996)
chr3 (35-91)||(15671175-15671231)
chr3 (35-83)||(35322016-35322064)
chr3 (35-116)||(42163665-42163746)
chr3 (38-119)||(43652530-43652611)
chr3 (35-91)||(27143998-27144054)
chr3 (35-92)||(32720579-32720636)
chr3 (35-78)||(2379662-2379705)
chr3 (35-120)||(36258647-36258733)
chr3 (41-91)||(43014644-43014694)
chr3 (35-80)||(31069618-31069663)
chr3 (43-119)||(46647454-46647530)
[»] chr1 (17 HSPs)
chr1 (36-122)||(50127407-50127493)
chr1 (38-91)||(31884521-31884574)
chr1 (35-91)||(27742552-27742608)
chr1 (35-121)||(19066829-19066915)
chr1 (35-121)||(19114719-19114805)
chr1 (35-91)||(40391276-40391332)
chr1 (41-91)||(16963639-16963689)
chr1 (35-119)||(26855885-26855968)
chr1 (38-121)||(13534558-13534640)
chr1 (35-118)||(33827883-33827966)
chr1 (35-118)||(33839999-33840082)
chr1 (35-78)||(44109129-44109172)
chr1 (35-129)||(50468865-50468959)
chr1 (35-91)||(30627673-30627730)
chr1 (35-91)||(15419709-15419765)
chr1 (38-96)||(18910466-18910524)
chr1 (35-77)||(33148912-33148954)
[»] chr2 (11 HSPs)
chr2 (35-120)||(37913062-37913147)
chr2 (35-121)||(19889714-19889800)
chr2 (38-119)||(11610471-11610552)
chr2 (35-91)||(21646535-21646591)
chr2 (38-91)||(18243800-18243853)
chr2 (35-119)||(23760650-23760734)
chr2 (35-95)||(13738453-13738514)
chr2 (35-92)||(23788464-23788520)
chr2 (35-80)||(43131817-43131862)
chr2 (35-119)||(7304377-7304461)
chr2 (36-80)||(27896473-27896517)
[»] chr7 (12 HSPs)
chr7 (35-119)||(45907092-45907176)
chr7 (35-91)||(36636066-36636122)
chr7 (35-90)||(21798798-21798852)
chr7 (35-122)||(22035700-22035787)
chr7 (41-87)||(16861680-16861726)
chr7 (38-91)||(8117505-8117558)
chr7 (38-92)||(11736227-11736282)
chr7 (38-88)||(19689502-19689551)
chr7 (38-91)||(16563531-16563584)
chr7 (38-91)||(16602078-16602131)
chr7 (35-94)||(16685726-16685787)
chr7 (35-94)||(17659962-17660023)
[»] chr4 (7 HSPs)
chr4 (38-119)||(19147209-19147290)
chr4 (35-92)||(31647719-31647776)
chr4 (35-120)||(38320177-38320262)
chr4 (50-91)||(20542724-20542765)
chr4 (35-78)||(54248993-54249036)
chr4 (38-92)||(47397603-47397657)
chr4 (56-118)||(14615177-14615239)
[»] scaffold0034 (1 HSPs)
scaffold0034 (38-91)||(22485-22538)
[»] chr8 (13 HSPs)
chr8 (35-120)||(28462602-28462686)
chr8 (35-88)||(30924834-30924887)
chr8 (35-91)||(41675729-41675785)
chr8 (38-87)||(29795508-29795557)
chr8 (35-120)||(39065592-39065677)
chr8 (35-91)||(900292-900348)
chr8 (35-91)||(37919398-37919454)
chr8 (35-87)||(39534196-39534248)
chr8 (35-72)||(20821908-20821945)
chr8 (51-91)||(39209436-39209476)
chr8 (37-91)||(38362264-38362318)
chr8 (35-91)||(18131190-18131246)
chr8 (35-80)||(44655292-44655337)
[»] scaffold0886 (1 HSPs)
scaffold0886 (35-115)||(1163-1243)
[»] scaffold0117 (1 HSPs)
scaffold0117 (35-98)||(16888-16951)
[»] scaffold0068 (1 HSPs)
scaffold0068 (38-121)||(51981-52064)
[»] scaffold0006 (1 HSPs)
scaffold0006 (35-119)||(38773-38856)
[»] scaffold1372 (1 HSPs)
scaffold1372 (35-74)||(1340-1379)
[»] scaffold0005 (1 HSPs)
scaffold0005 (56-118)||(202137-202199)
[»] scaffold0078 (1 HSPs)
scaffold0078 (38-118)||(923-1003)


Alignment Details
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 124 - 243
Target Start/End: Original strand, 2208798 - 2208926
Alignment:
Q  124 atatttatgataaaaattcaatccgatct---tactcttggatttacgaagtgtaccaaataaaacaacaaaaaatac-----atatttatgctctttaa 215  Q
    |||||||||||||||||||||||||| ||   |||||||||||||| |||||||||||||||||||||||||||||||     |||||||||||||||||    
T  2208798 atatttatgataaaaattcaatccgaactaattactcttggatttaagaagtgtaccaaataaaacaacaaaaaatacatttaatatttatgctctttaa 2208897  T
Q  216 tttagtat-aacatttacttctctaacca 243  Q
    |||||||| |||||||||||||| |||||    
T  2208898 tttagtataaacatttacttctcaaacca 2208926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 4803210 - 4803157
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaacc 88  Q
    |||||||||||||| ||||||||| |||||| ||||||||||||||||||||||    
T  4803210 aagtaataattacattactttttagtaaaaatttacttcttttggtgcttaacc 4803157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 10008248 - 10008191
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttgg-tgcttaaccaat 91  Q
    ||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||    
T  10008248 aagtaataattacaccactttttaataaaaacttacttcttttggttgcttaaccaat 10008191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 17506321 - 17506235
Alignment:
Q  35 aagtaataattacaatactttttaataaaaac--ttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctcc 119  Q
    |||||||||||||| ||||||||||||||||   |||||||||||||||| ||||||||  || ||| | || ||||||||||||||    
T  17506321 aagtaataattacattactttttaataaaaaaaattacttcttttggtgcctaaccaatgcccgagaggcaccggttaacattctcc 17506235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 19418647 - 19418592
Alignment:
Q  38 taataattacaatactttttaataaaaacttacttcttttgg-tgcttaaccaata 92  Q
    |||| ||||||  |||||||||||||| |||||||||||||| |||||||||||||    
T  19418647 taattattacatcactttttaataaaatcttacttcttttggatgcttaaccaata 19418592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 22297654 - 22297719
Alignment:
Q  54 ttttaataaaaacttacttcttttgg-tgcttaaccaatatcccagaagaactggttaacattctc 118  Q
    |||||||||||  ||||||||||| | ||||||||||||  |||||| | ||||||||||||||||    
T  22297654 ttttaataaaattttacttcttttagctgcttaaccaatgccccagaggcactggttaacattctc 22297719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 10253003 - 10252963
Alignment:
Q  53 tttttaataaaaacttacttcttttgg-tgcttaaccaata 92  Q
    |||||||||||| |||||||||||||| |||||||||||||    
T  10253003 tttttaataaaatcttacttcttttggttgcttaaccaata 10252963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 21809864 - 21809920
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaat 91  Q
    |||||||||||||  |||||||||||||||||||| ||  ||| | |||||||||||    
T  21809864 aagtaataattacgttactttttaataaaaacttattttatttagcgcttaaccaat 21809920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 124 - 243
Target Start/End: Original strand, 898 - 1027
Alignment:
Q  124 atatttatgataaaaattcaatccgatct---tactcttggatttacgaagtgtaccaaataaaacaacaaaaaata------catatttatgctcttta 214  Q
    |||||||||||||||||||||||||| ||   |||||||||||||| ||||||||||||||||||||||||||||||       ||||||||||||||||    
T  898 atatttatgataaaaattcaatccgaactaattactcttggatttaagaagtgtaccaaataaaacaacaaaaaataacatttaatatttatgctcttta 997  T
Q  215 atttagtat-aacatttacttctctaacca 243  Q
    ||||||||| |||||||||||||| |||||    
T  998 atttagtataaacatttacttctcaaacca 1027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 7609598 - 7609682
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctcc 119  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||| | || |||||||||||||||||    
T  7609598 aagtaataattacattactttttaataaaaacttacttcttttggtgcttaaccaatgccccgggagcactggttaacattctcc 7609682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 2611207 - 2611291
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctcc 119  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||  |||||  |  ||||||||||||||||    
T  2611207 aagtaataattacattactttttaataaaaacttacttcatttggtgcttaaccaatgccccaggggccctggttaacattctcc 2611291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 35 - 125
Target Start/End: Complemental strand, 14863391 - 14863301
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctccatagat 125  Q
    |||||||||||||| || |||||||||||||||||||| |||||||||||||||||| | || |  | |||| |||||||||||| |||||    
T  14863391 aagtaataattacattaatttttaataaaaacttactttttttggtgcttaaccaatgttccgggggcactgattaacattctccttagat 14863301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 120
Target Start/End: Complemental strand, 31619371 - 31619290
Alignment:
Q  38 taataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctcca 120  Q
    ||||||||||| |||||||||||||||| ||||||| |||||||||||||||||  |||||| | ||||||||||||| ||||    
T  31619371 taataattacattactttttaataaaaatttacttcatttggtgcttaaccaat-gcccagaggcactggttaacattttcca 31619290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 21052686 - 21052742
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaat 91  Q
    ||||||||||||||  | |||||||||||||||||||||||||||||||||||||||    
T  21052686 aagtaataattacatgattttttaataaaaacttacttcttttggtgcttaaccaat 21052742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 35185310 - 35185227
Alignment:
Q  36 agtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctccat 121  Q
    ||||||||||||| |||||||||||||||||||| ||  ||||||||||||||||||  || |||| |  ||||||||||||||||    
T  35185310 agtaataattacattactttttaataaaaacttattttatttggtgcttaaccaata--cccgaagcatcggttaacattctccat 35185227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 11320180 - 11320097
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccagaaga-actggttaacattctcc 119  Q
    |||||||||||||| |||||||||||||||| | |||| |||||||||||||||||| || || | || |||||||||||||||||    
T  11320180 aagtaataattacattactttttaataaaaattaactt-ttttggtgcttaaccaatgtctca-atgacactggttaacattctcc 11320097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 6102883 - 6102827
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttgg-tgcttaaccaat 91  Q
    |||||||||||||||||| |||||||||||| |||||| |||||| ||||||||||||    
T  6102883 aagtaataattacaatac-ttttaataaaaagttacttattttggttgcttaaccaat 6102827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 1447612 - 1447669
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttactt-cttttggtgcttaaccaat 91  Q
    |||||||||||||| ||||||| | |||||||||||||  ||||| ||||||||||||    
T  1447612 aagtaataattacactacttttcattaaaaacttacttatttttgttgcttaaccaat 1447669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 121
Target Start/End: Original strand, 44291288 - 44291374
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctccat 121  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||  ||| |  | |||||||||||||||||||    
T  44291288 aagtaataattacattactttttaataaatacttacttcttttggtgcttaaccaatgccccgggggcactggttaacattctccat 44291374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 43862996 - 43862912
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctcc 119  Q
    |||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||  |||||  | || ||||||||||||||    
T  43862996 aagtaataattacattactttttaataaaaacttacttcatttggggcttaaccaatgccccaggggcaccggttaacattctcc 43862912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 15671175 - 15671231
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaat 91  Q
    |||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||    
T  15671175 aagtaataattacattactttttaataaaaacttacttcatttggttcttaaccaat 15671231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 35322064 - 35322016
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgct 83  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35322064 aagtaataattacattactttttaataaaaacttacttcttttggtgct 35322016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 116
Target Start/End: Original strand, 42163665 - 42163746
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattc 116  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||  ||||||||  ||| || | || |||||||||||    
T  42163665 aagtaataattacattactttttaataaaaacttacttcatttggtgtgtaaccaatgccccggaggcaccggttaacattc 42163746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 119
Target Start/End: Original strand, 43652530 - 43652611
Alignment:
Q  38 taataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctcc 119  Q
    ||||||||||| ||||||||| || ||||||||||| |||||||||||||  || ||||  | | |||||||||||||||||    
T  43652530 taataattacattactttttagtagaaacttacttcatttggtgcttaacggatgtcccgaaggcactggttaacattctcc 43652611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 27144054 - 27143998
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaat 91  Q
    |||||||||||||| || ||||||||||||||||| ||| |||| ||||||||||||    
T  27144054 aagtaataattacattattttttaataaaaacttagttcatttgttgcttaaccaat 27143998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 32720579 - 32720636
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaata 92  Q
    |||||||||||| | || ||||||||||||||||||||  ||| ||||||||||||||    
T  32720579 aagtaataattatattattttttaataaaaacttacttaatttagtgcttaaccaata 32720636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 2379662 - 2379705
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttg 78  Q
    |||||| ||||||| ||||||||||||||||||||||| |||||    
T  2379662 aagtaagaattacactactttttaataaaaacttacttattttg 2379705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 120
Target Start/End: Complemental strand, 36258733 - 36258647
Alignment:
Q  35 aagtaataattacaatacttttt-aataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctcca 120  Q
    ||||||| |||||| |||||||| |||||||||||||||  ||||||| |||||| ||  || || || ||| ||||||||||||||    
T  36258733 aagtaatcattacattacttttttaataaaaacttactttatttggtgtttaacccatgccctaggagcactcgttaacattctcca 36258647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 43014694 - 43014644
Alignment:
Q  41 taattacaatactttttaataaaaacttacttcttttggtgcttaaccaat 91  Q
    |||||||| |||||||||| ||||||||||||  |||||||||||| ||||    
T  43014694 taattacattactttttaacaaaaacttactttatttggtgcttaatcaat 43014644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 31069618 - 31069663
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggt 80  Q
    |||||||||||||| ||||||||| ||||||| ||||| |||||||    
T  31069618 aagtaataattacactactttttattaaaaacgtacttattttggt 31069663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 46647530 - 46647454
Alignment:
Q  43 attacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctcc 119  Q
    |||||| ||||||||| ||||||||||||| || | || |||||||||| |||  || | |||||||| ||||||||    
T  46647530 attacactactttttattaaaaacttacttgttatagttcttaaccaatgtccttgaggcactggttagcattctcc 46647454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 50127407 - 50127493
Alignment:
Q  36 agtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctccata 122  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||  ||| |  | ||||||||||||||||||||    
T  50127407 agtaataattacattactttttaataaaaacttacttcttttggtacttaaccaatgccccgggggcactggttaacattctccata 50127493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 31884521 - 31884574
Alignment:
Q  38 taataattacaatactttttaataaaaacttacttcttttggtgcttaaccaat 91  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  31884521 taataattacattactttttaataaaaacttactttttttggtgcttaaccaat 31884574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 27742608 - 27742552
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaat 91  Q
    |||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||    
T  27742608 aagtaataattacattactttttaataaaaaattacttcttttgttgcttaaccaat 27742552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 121
Target Start/End: Complemental strand, 19066915 - 19066829
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctccat 121  Q
    ||||||||||||||||||||||||||||||| ||||||  ||||| ||||||||||| | |||| |  || |||||| |||||||||    
T  19066915 aagtaataattacaatactttttaataaaaatttactttatttggcgcttaaccaatgttccaggaacaccggttaagattctccat 19066829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 121
Target Start/End: Complemental strand, 19114805 - 19114719
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctccat 121  Q
    ||||||||||||||||||||||||||||||| ||||||  ||||| ||||||||||| | |||| |  || |||||| |||||||||    
T  19114805 aagtaataattacaatactttttaataaaaatttactttatttggcgcttaaccaatgttccaggaacaccggttaagattctccat 19114719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 40391276 - 40391332
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaat 91  Q
    |||||||||||||| |||||||| ||||||||| ||||| |||||||||||||||||    
T  40391276 aagtaataattacattactttttgataaaaactcacttcatttggtgcttaaccaat 40391332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 16963639 - 16963689
Alignment:
Q  41 taattacaatactttttaataaaaacttacttcttttggtgcttaaccaat 91  Q
    |||||||| |||||||||||||||| ||||||| |||||||||||||||||    
T  16963639 taattacattactttttaataaaaatttacttcatttggtgcttaaccaat 16963689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 26855885 - 26855968
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctcc 119  Q
    |||||||||||||| ||||||| |||||||| ||||||  |||||||||||||||||  ||| || | || ||||||||||||||    
T  26855885 aagtaataattacattactttt-aataaaaatttactttatttggtgcttaaccaatgccccggaggcaccggttaacattctcc 26855968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 13534558 - 13534640
Alignment:
Q  38 taataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctccat 121  Q
    ||||||||||| |||||||||||||||| ||||||  ||||| |||||||||||   || ||||| || |||||||||||||||    
T  13534558 taataattacattactttttaataaaaatttactttatttggcgcttaaccaatgctccggaagacct-gttaacattctccat 13534640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 118
Target Start/End: Original strand, 33827883 - 33827966
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctc 118  Q
    |||||||||||||| |||||||||||||||| ||| ||  |||||| ||||||||||| | ||||   | ||||||||||||||    
T  33827883 aagtaataattacattactttttaataaaaagttattttatttggttcttaaccaatacctcagagacattggttaacattctc 33827966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 118
Target Start/End: Complemental strand, 33840082 - 33839999
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctc 118  Q
    |||||||||||||| |||||||||||||||| ||| ||  |||||| ||||||||||| | ||||   | ||||||||||||||    
T  33840082 aagtaataattacattactttttaataaaaagttattttatttggttcttaaccaatacctcagagacattggttaacattctc 33839999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 44109129 - 44109172
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttg 78  Q
    |||||||||||||| |||||||||||||||||||||||| ||||    
T  44109129 aagtaataattacattactttttaataaaaacttacttcatttg 44109172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 129
Target Start/End: Original strand, 50468865 - 50468959
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctccatagatattt 129  Q
    |||||||||||||| |||||||||||||||| ||||||   ||| | |||||||||||| || || | | ||||||| ||||||| || ||||||    
T  50468865 aagtaataattacattactttttaataaaaatttactttacttgatacttaaccaatattccggaggcattggttaatattctccttatatattt 50468959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 30627673 - 30627730
Alignment:
Q  35 aagtaataattacaatactttttaat-aaaaacttacttcttttggtgcttaaccaat 91  Q
    ||||||| |||||| ||||||||||| ||||| |||||||| ||||||||||||||||    
T  30627673 aagtaatgattacattactttttaattaaaaatttacttctcttggtgcttaaccaat 30627730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 15419709 - 15419765
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaat 91  Q
    |||||||||||| | |||||||||||||||| ||||||  ||||||| |||||||||    
T  15419709 aagtaataattatattactttttaataaaaatttactttatttggtgtttaaccaat 15419765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 18910466 - 18910524
Alignment:
Q  38 taataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatccc 96  Q
    |||| |||||| |||||||||||||||| ||| ||||||||||| |||| |||| ||||    
T  18910466 taatgattacattactttttaataaaaatttatttcttttggtgtttaatcaatgtccc 18910524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 33148954 - 33148912
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttctttt 77  Q
    |||||||||||||| ||||||||| ||||||||||||| ||||    
T  33148954 aagtaataattacactactttttattaaaaacttacttatttt 33148912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 35 - 120
Target Start/End: Original strand, 37913062 - 37913147
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctcca 120  Q
    |||||||||| ||| || |||||||||||||||||||||||||| ||||||||||||| |||||||  || |||||||||||||||    
T  37913062 aagtaataatcacattaatttttaataaaaacttacttcttttgatgcttaaccaataccccagaaacacgggttaacattctcca 37913147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 121
Target Start/End: Complemental strand, 19889800 - 19889714
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctccat 121  Q
    |||||||||||||| ||||||||||| |||||||||||| |||| ||||||||||||  |||  | | |||| ||||||||||||||    
T  19889800 aagtaataattacattactttttaatgaaaacttacttcatttgatgcttaaccaatgccccgaaggcactgattaacattctccat 19889714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 119
Target Start/End: Original strand, 11610471 - 11610552
Alignment:
Q  38 taataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctcc 119  Q
    |||||||| || ||||||||||| |||||||||||| |||||||||||||||||  ||| |  | |||||||||||||||||    
T  11610471 taataattgcattactttttaatgaaaacttacttcatttggtgcttaaccaatgccccgggggcactggttaacattctcc 11610552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 21646535 - 21646591
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaat 91  Q
    |||||||||||||| ||||||||||| |||||||||||| ||||||| |||||||||    
T  21646535 aagtaataattacattactttttaatgaaaacttacttcatttggtgtttaaccaat 21646591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 18243800 - 18243853
Alignment:
Q  38 taataattacaatactttttaataaaaacttacttcttttggtgcttaaccaat 91  Q
    ||||||||| | |||||||||||||||||||||||  |||||||||||||||||    
T  18243800 taataattatattactttttaataaaaacttactttatttggtgcttaaccaat 18243853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 23760650 - 23760734
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctcc 119  Q
    |||||||||||||| ||||||||||  |||| |||||| || | |||||||||||||| | | ||||   |||||||||||||||    
T  23760650 aagtaataattacattactttttaaataaaatttactttttgtagtgcttaaccaatacctcggaagtgttggttaacattctcc 23760734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 13738453 - 13738514
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttgg-tgcttaaccaatatcc 95  Q
    ||||||| ||||||  | ||||| |||||||||||||| |||||| ||||||||||||||||    
T  13738453 aagtaatgattacacaatttttttataaaaacttacttgttttggatgcttaaccaatatcc 13738514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 23788464 - 23788520
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaata 92  Q
    |||||||||||||| |||||||||||||||| ||| || |||||||| |||| |||||    
T  23788464 aagtaataattacattactttttaataaaaattta-tttttttggtgtttaatcaata 23788520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 43131817 - 43131862
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggt 80  Q
    |||||||||||||| ||| |||| |||||||||||||| |||||||    
T  43131817 aagtaataattacactacctttttataaaaacttacttgttttggt 43131862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 7304377 - 7304461
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctcc 119  Q
    |||||||||||||| ||| |||| |||||| |||| || ||||| || ||||||||| |||  || | ||| |||||||||||||    
T  7304377 aagtaataattacactacgtttttataaaatcttatttgttttgttgtttaaccaatgtccttgaggcacttgttaacattctcc 7304461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 27896517 - 27896473
Alignment:
Q  36 agtaataattacaatactttttaataaaaacttacttcttttggt 80  Q
    |||||||||||||  |||||||||| ||||||||||| |||||||    
T  27896517 agtaataattacacaactttttaattaaaacttacttattttggt 27896473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 45907092 - 45907176
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctcc 119  Q
    |||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||| |    |||||||||||||||||    
T  45907092 aagtaataattacattactttttaataaaaacttacttctttttatgcttaaccaatatcccggggacactggttaacattctcc 45907176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 36636066 - 36636122
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaat 91  Q
    |||||||||||||| || ||||||||||||||||||||  |||||||||||||||||    
T  36636066 aagtaataattacattattttttaataaaaacttactttatttggtgcttaaccaat 36636122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 21798852 - 21798798
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaa 90  Q
    |||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||    
T  21798852 aagtaataattacattacttcttaataaaaa-ttacttcttttggtgcttaaccaa 21798798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 122
Target Start/End: Complemental strand, 22035787 - 22035700
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctccata 122  Q
    |||||||||||||| || ||||||||||||||||||||| |||||  ||||||| ||  ||| || | | | ||||||||||||||||    
T  22035787 aagtaataattacattattttttaataaaaacttacttcatttggaacttaaccgatgccccggaggcattagttaacattctccata 22035700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 16861726 - 16861680
Alignment:
Q  41 taattacaatactttttaataaaaacttacttcttttggtgcttaac 87  Q
    |||||||| ||||||||||||||| |||| |||||||||||||||||    
T  16861726 taattacattactttttaataaaaccttatttcttttggtgcttaac 16861680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 8117505 - 8117558
Alignment:
Q  38 taataattacaatactttttaataaaaacttacttcttttggtgcttaaccaat 91  Q
    ||||||||||| |||||||||||||||||||||||| ||| | | |||||||||    
T  8117505 taataattacattactttttaataaaaacttacttcatttagcgtttaaccaat 8117558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 11736227 - 11736282
Alignment:
Q  38 taataattacaatactttttaataaaaacttacttcttttgg-tgcttaaccaata 92  Q
    |||| ||||||  |||||||||||||| |||||||||||||| |||||||||||||    
T  11736227 taattattacaccactttttaataaaatcttacttcttttggctgcttaaccaata 11736282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 19689551 - 19689502
Alignment:
Q  38 taataattacaatactttttaataaaaacttacttcttttggtgcttaacc 88  Q
    ||||||||||| ||||||||||| |||||||||||| ||||||| ||||||    
T  19689551 taataattacattactttttaat-aaaacttacttcatttggtgtttaacc 19689502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 16563531 - 16563584
Alignment:
Q  38 taataattacaatactttttaataaaaacttacttcttttggtgcttaaccaat 91  Q
    ||||||||||| |||||||||||||||||||| ||  ||| ||| |||||||||    
T  16563531 taataattacattactttttaataaaaacttaatttatttagtgtttaaccaat 16563584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 16602131 - 16602078
Alignment:
Q  38 taataattacaatactttttaataaaaacttacttcttttggtgcttaaccaat 91  Q
    ||||||||||| |||||||||||||||||||| ||  ||| ||| |||||||||    
T  16602131 taataattacattactttttaataaaaacttaatttatttagtgtttaaccaat 16602078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 16685787 - 16685726
Alignment:
Q  35 aagtaataattacaatactttttaa-taaaaacttacttcttttgg-tgcttaaccaatatc 94  Q
    ||||||| ||||||  ||||||||| ||||||||||||| |||||| |||||||||||||||    
T  16685787 aagtaatgattacacaactttttaaataaaaacttacttattttggatgcttaaccaatatc 16685726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 17660023 - 17659962
Alignment:
Q  35 aagtaataattacaatactttttaa-taaaaacttacttcttttgg-tgcttaaccaatatc 94  Q
    ||||||| ||||||  ||||||||| ||||||||||||| |||||| |||||||||||||||    
T  17660023 aagtaatgattacacaactttttaaataaaaacttacttattttggatgcttaaccaatatc 17659962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 119
Target Start/End: Original strand, 19147209 - 19147290
Alignment:
Q  38 taataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctcc 119  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||| ||  | || ||||||||||||    
T  19147209 taataattacattacttattaataaaaacttacttcttttggtgcttaatcaatatcccaaaaatattgattaacattctcc 19147290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 31647776 - 31647719
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaata 92  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  31647776 aagtaataattacattactttttaataaaaacttatttcttttggtgcttaaccaata 31647719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 120
Target Start/End: Original strand, 38320177 - 38320262
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctcca 120  Q
    |||||||||||||| |||||||||||||||||||||||  |||| |||||||| ||| || | |  | ||||||||||||||||||    
T  38320177 aagtaataattacattactttttaataaaaacttactttatttgatgcttaactaatgtctctggcgcactggttaacattctcca 38320262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 20542724 - 20542765
Alignment:
Q  50 tactttttaataaaaacttacttcttttggtgcttaaccaat 91  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  20542724 tactttttaataaaaacttaattcttttggtgcttaaccaat 20542765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 54249036 - 54248993
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttg 78  Q
    |||| |||||||||||| ||||||||||||||||||||||||||    
T  54249036 aagtgataattacaatattttttaataaaaacttacttcttttg 54248993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 47397657 - 47397603
Alignment:
Q  38 taataattacaatactttttaataaaaacttacttcttttggtgcttaaccaata 92  Q
    ||||||||| | ||||||| |||||||| ||||| ||||||||||||||||||||    
T  47397657 taataattatattacttttaaataaaaatttactacttttggtgcttaaccaata 47397603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 14615177 - 14615239
Alignment:
Q  56 ttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctc 118  Q
    |||||||||| ||| ||| |||||||||||||||||||||  |||  || |||||||||||||    
T  14615177 ttaataaaaatttatttcatttggtgcttaaccaatatcctggaaacaccggttaacattctc 14615239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 22485 - 22538
Alignment:
Q  38 taataattacaatactttttaataaaaacttacttcttttggtgcttaaccaat 91  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  22485 taataattacattactctttaataaaaacttacttcttttggtgcttaaccaat 22538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 120
Target Start/End: Original strand, 28462602 - 28462686
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctcca 120  Q
    |||||||||||||| ||||||| |||||||||||||||| ||||||| ||||||||| |||| | || ||||||| | ||||||||    
T  28462602 aagtaataattacattactttt-aataaaaacttacttcatttggtgtttaaccaatgtcccgggagcactggtttatattctcca 28462686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 30924887 - 30924834
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaacc 88  Q
    |||||||||||||| |||||| ||| ||||||||||||||||||||||||||||    
T  30924887 aagtaataattacattactttctaacaaaaacttacttcttttggtgcttaacc 30924834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 41675729 - 41675785
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaat 91  Q
    |||||||||||| | | |||||||||||||| |||||||||||||||||||||||||    
T  41675729 aagtaataattatatttctttttaataaaaatttacttcttttggtgcttaaccaat 41675785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 29795557 - 29795508
Alignment:
Q  38 taataattacaatactttttaataaaaacttacttcttttggtgcttaac 87  Q
    ||||||||||| |||||||||| ||||||||| |||||||||||||||||    
T  29795557 taataattacattactttttaacaaaaacttaattcttttggtgcttaac 29795508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 120
Target Start/End: Original strand, 39065592 - 39065677
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctcca 120  Q
    |||||||||| ||| || ||||||||||||| ||||||||||| |||||||||||||   ||||| | ||| |||| |||||||||    
T  39065592 aagtaataatgacattattttttaataaaaatttacttcttttagtgcttaaccaatgctccagaggcactagttagcattctcca 39065677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 900292 - 900348
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaat 91  Q
    |||||||||||| | |||||||||||||||||||||||  ||||||| |||||||||    
T  900292 aagtaataattatattactttttaataaaaacttactttatttggtgtttaaccaat 900348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 37919454 - 37919398
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaat 91  Q
    |||||||||||||| |||||||||||||||| ||||||  || ||||||||||||||    
T  37919454 aagtaataattacattactttttaataaaaatttactttattcggtgcttaaccaat 37919398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 39534196 - 39534248
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaac 87  Q
    |||||||||||||| |||||||||||||||| |||| || |||||||||||||    
T  39534196 aagtaataattacattactttttaataaaaatttacctcatttggtgcttaac 39534248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 20821945 - 20821908
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttactt 72  Q
    |||||||||||||| |||||||||||||||||||||||    
T  20821945 aagtaataattacattactttttaataaaaacttactt 20821908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 39209436 - 39209476
Alignment:
Q  51 actttttaataaaaacttacttcttttggtgcttaaccaat 91  Q
    ||||||||||||||| ||||||| |||||||||||||||||    
T  39209436 actttttaataaaaatttacttcgtttggtgcttaaccaat 39209476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 38362264 - 38362318
Alignment:
Q  37 gtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaat 91  Q
    |||||||||||| | |||||||||||||| ||||||  |||| ||||||||||||    
T  38362264 gtaataattacattgctttttaataaaaatttactttatttgatgcttaaccaat 38362318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 18131246 - 18131190
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttgg-tgcttaaccaat 91  Q
    |||||||||||||| ||||||| |||||||| |||||| |||||| ||||||||||||    
T  18131246 aagtaataattacactactttt-aataaaaagttacttgttttggttgcttaaccaat 18131190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 44655292 - 44655337
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggt 80  Q
    |||||||||||||| ||||||||| |||||||||| || |||||||    
T  44655292 aagtaataattacactactttttattaaaaacttatttattttggt 44655337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 115
Target Start/End: Original strand, 1163 - 1243
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacatt 115  Q
    |||||||||||||| ||||||||||||||| |||| ||  |||| | ||||||||||||| |||||| || ||||||||||    
T  1163 aagtaataattacattactttttaataaaagcttattttatttgattcttaaccaatatctcagaagcaccggttaacatt 1243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 16888 - 16951
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccag 98  Q
    |||||||||||| |  | ||||||||||||||||| |||||||||||||||||||||| |||||    
T  16888 aagtaataattatataattttttaataaaaacttatttcttttggtgcttaaccaatagcccag 16951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 52064 - 51981
Alignment:
Q  38 taataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctccat 121  Q
    ||||||||||| |||||||||||||||||||||||  ||| | | ||||||||||| || |||  || ||||||||||||||||    
T  52064 taataattacattactttttaataaaaacttactttatttagcgtttaaccaatattccggaaacaccggttaacattctccat 51981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 38856 - 38773
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctcc 119  Q
    |||||||||||||| |||||||||||||||||||| ||  |||| | ||||||||||   |||| || |||||||||||||||||    
T  38856 aagtaataattacattactttttaataaaaacttattttatttgattcttaaccaatgctccag-agcactggttaacattctcc 38773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1372 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1372
Description:

Target: scaffold1372; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 74
Target Start/End: Original strand, 1340 - 1379
Alignment:
Q  35 aagtaataattacaatactttttaataaaaacttacttct 74  Q
    |||||||||||||| | |||||||||||||||||||||||    
T  1340 aagtaataattacatttctttttaataaaaacttacttct 1379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 202199 - 202137
Alignment:
Q  56 ttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctc 118  Q
    |||||||||| ||| ||| |||||||||||||||||||||  |||  || |||||||||||||    
T  202199 ttaataaaaatttatttcatttggtgcttaaccaatatcctggaaacaccggttaacattctc 202137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 923 - 1003
Alignment:
Q  38 taataattacaatactttttaataaaaacttacttcttttggtgcttaaccaatatcccagaagaactggttaacattctc 118  Q
    ||||||||||| ||| || ||||||||| ||||||  ||| ||| ||||||||   |||||||  ||||||||||||||||    
T  923 taataattacattacattctaataaaaatttactttatttagtgtttaaccaaatccccagaaacactggttaacattctc 1003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University