View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20610_low_12 (Length: 277)
Name: NF20610_low_12
Description: NF20610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20610_low_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 12 - 184
Target Start/End: Complemental strand, 255730 - 255558
Alignment:
| Q |
12 |
acagataaagagcagttataatttaaactcggtatttttgaaataataaatttacaattaaagcagctttttctaagccatcggatcaagatcaaacacc |
111 |
Q |
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| T |
255730 |
acagatgaagagcagttctaatttaaaatcagtatttttaaaataataaatttacaattaaaacagctttttctaagccatcggatcaagatcaaacacc |
255631 |
T |
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| Q |
112 |
actaatgttgtgaatgtatgagagagggaaaagggcgacggcattttgttaaggttgacgggtgtgaaagatt |
184 |
Q |
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| T |
255630 |
aataatgttgtgaatgtatgagagagggaaaagggcaacagcattttgttaaggttgacgggtgtgaaagatt |
255558 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 38407590 - 38407542
Alignment:
| Q |
229 |
aatatcctcagaaagattaatgctattttgtgaatcacatttggtttgc |
277 |
Q |
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| T |
38407590 |
aatatccacagaaagattaatgctaatttgtgaatcacattgggtttgc |
38407542 |
T |
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