View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20610_low_13 (Length: 262)

Name: NF20610_low_13
Description: NF20610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20610_low_13
NF20610_low_13
[»] scaffold0531 (2 HSPs)
scaffold0531 (18-199)||(8931-9112)
scaffold0531 (166-262)||(8835-8931)
[»] chr2 (5 HSPs)
chr2 (45-199)||(26707102-26707255)
chr2 (45-151)||(26707093-26707199)
chr2 (108-207)||(7902777-7902875)
chr2 (51-138)||(7902777-7902863)
chr2 (98-200)||(26707158-26707259)
[»] chr6 (2 HSPs)
chr6 (45-138)||(8027554-8027646)
chr6 (100-197)||(8027552-8027648)
[»] chr8 (2 HSPs)
chr8 (148-251)||(19789836-19789939)
chr8 (67-130)||(19789900-19789963)
[»] chr7 (1 HSPs)
chr7 (145-251)||(12926163-12926270)
[»] chr4 (1 HSPs)
chr4 (148-209)||(40274752-40274813)
[»] scaffold0009 (1 HSPs)
scaffold0009 (90-138)||(161656-161704)


Alignment Details
Target: scaffold0531 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 9112 - 8931
Alignment:
Q  18 atatgagaatacatatgacgattaactatgtgattaatttgagatgcatgaatattcttgattacctttatgggattcaaattgatgtgattaatttgag 117  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9112 atatgagaagacatatgacgattaactatgtgattaatttgagatgcatgaatattcatgattacctttatgggattcaaattgatgtgattaatttgag 9013  T
Q  118 atgaatgaatattcttgattatactaatcggattcagattgacgtgattaatttgagatgaatggatattcttgattaccct 199  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9012 atgaatgaatattcttgattatcctaatcggattcagattgacgtgattaatttgagatgaatggatattcttgattaccct 8931  T

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Target: scaffold0531; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 166 - 262
Target Start/End: Complemental strand, 8931 - 8835
Alignment:
Q  166 taatttgagatgaatggatattcttgattacccttctcgattactcttaaccatgagttggtgatgattttgacttgtttttgctcctaatgagtat 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8931 taatttgagatgaatggatattcttgattacccttctcgattactcttaaccatgagttggtgatgattttgacttgtgtttgctcctaatgagtat 8835  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 199
Target Start/End: Complemental strand, 26707255 - 26707102
Alignment:
Q  45 atgtgattaatttgagatgcatgaatattcttgattacctttatgggattcaaattgatgtgattaatttgagatgaatgaatattcttgattatactaa 144  Q
    ||||||||||||||| ||| | ||| |  |||| ||||| ||||  |||||||||||||||||||||||||||||||||||||| |||||||||  ||      
T  26707255 atgtgattaatttgatatgaacgaa-acccttgcttacccttataagattcaaattgatgtgattaatttgagatgaatgaatactcttgattacccttg 26707157  T
Q  145 tcggattcagattgacgtgattaatttgagatgaatggatattcttgattaccct 199  Q
    ||||||||||||||  |||| || ||||||||||| | || ||||||||||||||    
T  26707156 tcggattcagattgttgtgaatattttgagatgaaggaattttcttgattaccct 26707102  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 45 - 151
Target Start/End: Complemental strand, 26707199 - 26707093
Alignment:
Q  45 atgtgattaatttgagatgcatgaatattcttgattacctttatgggattcaaattgatgtgattaatttgagatgaatgaatattcttgattatactaa 144  Q
    ||||||||||||||||||| ||||||| ||||||||||| || | ||||||| |||| ||||| || ||||||||||| |||| ||||||||||  ||||    
T  26707199 atgtgattaatttgagatgaatgaatactcttgattacccttgtcggattcagattgttgtgaatattttgagatgaaggaattttcttgattaccctaa 26707100  T
Q  145 tcggatt 151  Q
    || ||||    
T  26707099 tccgatt 26707093  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 207
Target Start/End: Original strand, 7902777 - 7902875
Alignment:
Q  108 ttaatttgagatgaatgaatattcttgattatactaatcggattcagattgacgtgattaatttgagatgaatggatattcttgattacccttctcgatt 207  Q
    ||||||||||||||||||||||| || ||||  || ||  ||||||||| || |||| |||| ||| ||||||| |||||||||||||||||| ||||||    
T  7902777 ttaatttgagatgaatgaatattttt-attacccttatttgattcagatggatgtgaataatatgaaatgaatgaatattcttgattacccttatcgatt 7902875  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 138
Target Start/End: Original strand, 7902777 - 7902863
Alignment:
Q  51 ttaatttgagatgcatgaatattcttgattacctttatgggattcaaattgatgtgattaatttgagatgaatgaatattcttgatta 138  Q
    ||||||||||||| ||||||||| || |||||| ||||  |||||| || ||||||| |||| ||| |||||||||||||||||||||    
T  7902777 ttaatttgagatgaatgaatattttt-attacccttatttgattcagatggatgtgaataatatgaaatgaatgaatattcttgatta 7902863  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 200
Target Start/End: Complemental strand, 26707259 - 26707158
Alignment:
Q  98 attgatgtgattaatttgagatgaatgaatattcttgattatactaatcggattcagattgacgtgattaatttgagatgaatggatattcttgattacc 197  Q
    ||||||||||||||||||| ||||| ||| |  |||| |||  || ||  |||||| ||||| ||||||||||||||||||||| ||| |||||||||||    
T  26707259 attgatgtgattaatttgatatgaacgaa-acccttgcttacccttataagattcaaattgatgtgattaatttgagatgaatgaatactcttgattacc 26707161  T
Q  198 ctt 200  Q
    |||    
T  26707160 ctt 26707158  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 138
Target Start/End: Original strand, 8027554 - 8027646
Alignment:
Q  45 atgtgattaatttgagatgcatgaatattcttgattacctttatgggattcaaattgatgtgattaatttgagatgaatgaatattcttgatta 138  Q
    |||||| ||||||||||||||||||||||||||||| || |||| ||||||| ||| || ||||||| ||||||||||| |||| |||||||||    
T  8027554 atgtgactaatttgagatgcatgaatattcttgattgcccttat-ggattcagattaatatgattaacttgagatgaataaatagtcttgatta 8027646  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 197
Target Start/End: Original strand, 8027552 - 8027648
Alignment:
Q  100 tgatgtgattaatttgagatgaatgaatattcttgattatactaatcggattcagattgacgtgattaatttgagatgaatggatattcttgattacc 197  Q
    |||||||| |||||||||||| ||||||||||||||||   || || ||||||||||| |  ||||||| |||||||||||  ||| |||||||||||    
T  8027552 tgatgtgactaatttgagatgcatgaatattcttgattgcccttat-ggattcagattaatatgattaacttgagatgaataaatagtcttgattacc 8027648  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 251
Target Start/End: Complemental strand, 19789939 - 19789836
Alignment:
Q  148 gattcagattgacgtgattaatttgagatgaatggatattcttgattacccttctcgattactctt-aaccatgagttggtgatgattttgacttgtttt 246  Q
    |||||||||||| |||||||| |||||||||||| ||||| |||||||||||| |||||||| ||| |||||||| || ||  ||||||||  |||| ||    
T  19789939 gattcagattgatgtgattaacttgagatgaatgaatatt-ttgattacccttatcgattacccttaaaccatgaattagtattgattttgtgttgtgtt 19789841  T
Q  247 tgctc 251  Q
    |||||    
T  19789840 tgctc 19789836  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 19789963 - 19789900
Alignment:
Q  67 gaatattcttgattacctttatgggattcaaattgatgtgattaatttgagatgaatgaatatt 130  Q
    |||| ||||||||| || ||||  |||||| |||||||||||||| ||||||||||||||||||    
T  19789963 gaatgttcttgatttcccttatcagattcagattgatgtgattaacttgagatgaatgaatatt 19789900  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 251
Target Start/End: Original strand, 12926163 - 12926270
Alignment:
Q  145 tcggattcagattgacgtgattaatttgagatgaatggatattcttgattacccttctcgattactctt-aaccatgagttggtgatgattttgacttgt 243  Q
    ||||||||| ||||  |||||||| |||||||||||| ||| | |||||| ||||| |||||||| ||| ||||||||||| ||| | ||||||| ||||    
T  12926163 tcggattcatattgttgtgattaacttgagatgaatgaatacttttgattgcccttatcgattacccttaaaccatgagttagtgttaattttgatttgt 12926262  T
Q  244 ttttgctc 251  Q
     |||||||    
T  12926263 gtttgctc 12926270  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 40274813 - 40274752
Alignment:
Q  148 gattcagattgacgtgattaatttgagatgaatggatattcttgattacccttctcgattac 209  Q
    |||||||||||| |||||||| ||||||| |||| ||||| || ||||||||| ||||||||    
T  40274813 gattcagattgatgtgattaacttgagataaatgaatattttttattacccttatcgattac 40274752  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 161704 - 161656
Alignment:
Q  90 ggattcaaattgatgtgattaatttgagatgaatgaatattcttgatta 138  Q
    ||||||| |||| ||||||||| |||||||||||||||| | |||||||    
T  161704 ggattcatattgttgtgattaacttgagatgaatgaatacttttgatta 161656  T

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