View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20610_low_15 (Length: 252)
Name: NF20610_low_15
Description: NF20610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20610_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 199
Target Start/End: Complemental strand, 16486555 - 16486504
Alignment:
| Q |
148 |
tctattctcaaaaaacatttttcatacactaactcgaataaaacccttaatc |
199 |
Q |
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| T |
16486555 |
tctattctcaaaaaacatttttcatacactaaatcgaataaaacccttaatc |
16486504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 16486487 - 16486451
Alignment:
| Q |
199 |
ctaatatatcacaatatgttgcaccatgttagtagtg |
235 |
Q |
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| T |
16486487 |
ctaatatatcacaatatgttgcaccatgttagtagtg |
16486451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 152
Target Start/End: Complemental strand, 16486598 - 16486569
Alignment:
| Q |
123 |
ttaacatacaaatgcaaagattaattctat |
152 |
Q |
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| T |
16486598 |
ttaacatacaaatgcaaagattaattctat |
16486569 |
T |
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