View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20610_low_17 (Length: 248)

Name: NF20610_low_17
Description: NF20610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20610_low_17
NF20610_low_17
[»] chr8 (12 HSPs)
chr8 (167-230)||(8041690-8041753)
chr8 (1-43)||(36470134-36470176)
chr8 (1-42)||(4623850-4623891)
chr8 (1-41)||(30204649-30204689)
chr8 (1-43)||(39436889-39436931)
chr8 (1-42)||(16656026-16656067)
chr8 (1-37)||(23403646-23403682)
chr8 (4-43)||(36046528-36046567)
chr8 (1-43)||(21567755-21567797)
chr8 (1-42)||(37630050-37630091)
chr8 (6-38)||(29958518-29958550)
chr8 (1-41)||(41787544-41787584)
[»] chr1 (9 HSPs)
chr1 (171-230)||(42527332-42527391)
chr1 (1-43)||(18808826-18808868)
chr1 (1-43)||(7409822-7409864)
chr1 (1-37)||(794961-794997)
chr1 (7-43)||(39002001-39002037)
chr1 (1-40)||(41998881-41998920)
chr1 (4-42)||(6750310-6750348)
chr1 (5-43)||(11121909-11121947)
chr1 (1-43)||(36290639-36290681)
[»] chr2 (14 HSPs)
chr2 (1-43)||(27004497-27004539)
chr2 (1-43)||(15070389-15070431)
chr2 (1-43)||(30757183-30757225)
chr2 (4-41)||(5807321-5807358)
chr2 (1-40)||(27969535-27969574)
chr2 (1-40)||(37060081-37060120)
chr2 (1-43)||(4382255-4382297)
chr2 (1-43)||(14786282-14786324)
chr2 (1-43)||(28107487-28107529)
chr2 (1-42)||(6974517-6974558)
chr2 (2-43)||(21423414-21423455)
chr2 (1-42)||(30609686-30609727)
chr2 (8-43)||(5959021-5959056)
chr2 (1-42)||(13274249-13274289)
[»] scaffold0306 (1 HSPs)
scaffold0306 (1-43)||(13055-13097)
[»] scaffold0152 (1 HSPs)
scaffold0152 (1-43)||(22230-22272)
[»] chr7 (5 HSPs)
chr7 (1-43)||(41326089-41326131)
chr7 (1-41)||(31637762-31637802)
chr7 (1-43)||(40337065-40337107)
chr7 (1-41)||(8163644-8163684)
chr7 (1-43)||(28089182-28089224)
[»] chr6 (9 HSPs)
chr6 (1-43)||(4032326-4032368)
chr6 (1-43)||(444569-444611)
chr6 (1-43)||(2814889-2814931)
chr6 (1-43)||(23774117-23774159)
chr6 (1-43)||(24640351-24640393)
chr6 (1-41)||(6200163-6200203)
chr6 (1-41)||(34710159-34710199)
chr6 (1-43)||(1067848-1067891)
chr6 (1-34)||(2993592-2993625)
[»] chr5 (12 HSPs)
chr5 (1-43)||(38451038-38451080)
chr5 (1-43)||(39508315-39508357)
chr5 (1-42)||(3729333-3729374)
chr5 (1-42)||(8159070-8159111)
chr5 (6-43)||(9793634-9793671)
chr5 (1-42)||(21020731-21020772)
chr5 (1-41)||(34766885-34766925)
chr5 (4-43)||(20736157-20736196)
chr5 (7-42)||(41929395-41929430)
chr5 (6-43)||(9793731-9793768)
chr5 (1-42)||(21583897-21583938)
chr5 (4-41)||(41910219-41910256)
[»] chr4 (10 HSPs)
chr4 (1-43)||(21555428-21555470)
chr4 (1-43)||(23249518-23249560)
chr4 (1-43)||(35929755-35929797)
chr4 (1-43)||(36609412-36609454)
chr4 (1-42)||(27733424-27733465)
chr4 (1-42)||(44243696-44243737)
chr4 (2-43)||(53583470-53583511)
chr4 (1-41)||(827877-827917)
chr4 (1-42)||(12701086-12701127)
chr4 (1-41)||(35749433-35749473)
[»] chr3 (11 HSPs)
chr3 (1-43)||(36404221-36404263)
chr3 (1-43)||(46487317-46487359)
chr3 (1-41)||(47599412-47599452)
chr3 (1-40)||(35534530-35534569)
chr3 (4-43)||(39392008-39392047)
chr3 (1-43)||(29360530-29360572)
chr3 (4-42)||(45603035-45603073)
chr3 (1-42)||(37115887-37115928)
chr3 (1-43)||(3618339-3618381)
chr3 (1-43)||(54882991-54883033)
chr3 (4-37)||(16353494-16353527)
[»] scaffold0302 (1 HSPs)
scaffold0302 (1-42)||(18503-18544)
[»] scaffold0025 (1 HSPs)
scaffold0025 (1-40)||(67920-67959)
[»] scaffold1248 (1 HSPs)
scaffold1248 (8-42)||(1023-1057)
[»] scaffold0952 (1 HSPs)
scaffold0952 (8-42)||(1256-1290)
[»] scaffold0140 (1 HSPs)
scaffold0140 (1-43)||(21524-21566)


Alignment Details
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 167 - 230
Target Start/End: Complemental strand, 8041753 - 8041690
Alignment:
Q  167 attcggaaatcctctgtttgagaatgaacgaatctgacacataaattctacgatgagaagttct 230  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8041753 attcggaaatcctctgtttgagaatgaacgaatctcacacataaattctacgatgagaagttct 8041690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 36470176 - 36470134
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  36470176 ttctcacaatagttatccttttacatgttttagttttagtccc 36470134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4623891 - 4623850
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtcc 42  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  4623891 ttctcacaatagttatccttttacatgttttagttttagtcc 4623850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 30204689 - 30204649
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtc 41  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  30204689 ttctcacaatagttatccttttacatgttttagttttagtc 30204649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 39436889 - 39436931
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    ||||||||||||||||  |||||||||||||||||||||||||    
T  39436889 ttctcacaatagttatttttttatatgttttagttttagtccc 39436931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 16656026 - 16656067
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtcc 42  Q
    ||||||||||||||||| ||||| ||||||||||||||||||    
T  16656026 ttctcacaatagttatcattttacatgttttagttttagtcc 16656067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 23403646 - 23403682
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagtttt 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  23403646 ttctcacaatagttatccttttacatgttttagtttt 23403682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 36046567 - 36046528
Alignment:
Q  4 tcacaatagttatccttttatatgttttagttttagtccc 43  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  36046567 tcacaatagttatccttttacatgttttagttttaatccc 36046528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 21567755 - 21567797
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    |||| |||||||||||| ||||| |||||||||||||||||||    
T  21567755 ttcttacaatagttatctttttacatgttttagttttagtccc 21567797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 37630050 - 37630091
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtcc 42  Q
    ||||| ||||||||| ||||||| ||||||||||||||||||    
T  37630050 ttctcgcaatagttagccttttacatgttttagttttagtcc 37630091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 29958550 - 29958518
Alignment:
Q  6 acaatagttatccttttatatgttttagtttta 38  Q
    |||||||||||||||||| ||||||||||||||    
T  29958550 acaatagttatccttttacatgttttagtttta 29958518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 41787544 - 41787584
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtc 41  Q
    |||| |||||||||||| ||||| |||||||||||||||||    
T  41787544 ttcttacaatagttatctttttacatgttttagttttagtc 41787584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 42527332 - 42527391
Alignment:
Q  171 ggaaatcctctgtttgagaatgaacgaatctgacacataaattctacgatgagaagttct 230  Q
    |||||||| |||||||||||||||| ||||| |||||||||||||| |||||||||||||    
T  42527332 ggaaatccactgtttgagaatgaacaaatctcacacataaattctatgatgagaagttct 42527391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 18808826 - 18808868
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  18808826 ttctcacaatagttatccttttatatgttttagttttagtccc 18808868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 7409864 - 7409822
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  7409864 ttctcataatagttatccttttacatgttttagttttagtccc 7409822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 794961 - 794997
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagtttt 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  794961 ttctcacaatagttatccttttacatgttttagtttt 794997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 39002001 - 39002037
Alignment:
Q  7 caatagttatccttttatatgttttagttttagtccc 43  Q
    ||||||||||||||||| |||||||||||||||||||    
T  39002001 caatagttatccttttacatgttttagttttagtccc 39002037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 41998920 - 41998881
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagt 40  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  41998920 ttctcacaatatttatctttttatatgttttagttttagt 41998881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 6750348 - 6750310
Alignment:
Q  4 tcacaatagttatccttttatatgttttagttttagtcc 42  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  6750348 tcacaatagttatctttttacatgttttagttttagtcc 6750310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 11121909 - 11121947
Alignment:
Q  5 cacaatagttatccttttatatgttttagttttagtccc 43  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  11121909 cacaatagttatcattttacatgttttagttttagtccc 11121947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 36290639 - 36290681
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    |||| |||||||||||| ||||| |||||||||||||||||||    
T  36290639 ttctgacaatagttatcattttacatgttttagttttagtccc 36290681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 27004497 - 27004539
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  27004497 ttctcacaatagttatccttttatatgttttagttttagtccc 27004539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 15070431 - 15070389
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  15070431 ttctcacaatagttatccttttatatgtttttgttttagtccc 15070389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 30757225 - 30757183
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  30757225 ttctcacaatagttatccttttacatgttttagttttagtccc 30757183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 5807358 - 5807321
Alignment:
Q  4 tcacaatagttatccttttatatgttttagttttagtc 41  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5807358 tcacaatagttatccttttatatgttttagttttagtc 5807321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 27969535 - 27969574
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagt 40  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  27969535 ttctcacaatagttatccttttatatgttttaattttagt 27969574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 37060120 - 37060081
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagt 40  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  37060120 ttctcacaatagttatccttttacatgttttagttttagt 37060081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 4382255 - 4382297
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    ||||||||||||||||| ||||| |||||||||||||||||||    
T  4382255 ttctcacaatagttatcattttacatgttttagttttagtccc 4382297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 14786282 - 14786324
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    ||||||||||||||||||| ||| |||||||||||||||||||    
T  14786282 ttctcacaatagttatcctattacatgttttagttttagtccc 14786324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 28107529 - 28107487
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    ||||||||||||||||||||||| |||||||||||||| ||||    
T  28107529 ttctcacaatagttatccttttacatgttttagttttaatccc 28107487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 6974558 - 6974517
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtcc 42  Q
    ||||||||||||||||| ||||| ||||||||||||||||||    
T  6974558 ttctcacaatagttatcattttacatgttttagttttagtcc 6974517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 21423414 - 21423455
Alignment:
Q  2 tctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    |||||||||||||||||| ||| |||||||||||||||||||    
T  21423414 tctcacaatagttatcctattacatgttttagttttagtccc 21423455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 30609727 - 30609686
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtcc 42  Q
    ||||||||||||||||| ||||| ||||||||||||||||||    
T  30609727 ttctcacaatagttatcattttacatgttttagttttagtcc 30609686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 5959021 - 5959056
Alignment:
Q  8 aatagttatccttttatatgttttagttttagtccc 43  Q
    |||||||||||||||| |||||||||||||||||||    
T  5959021 aatagttatccttttacatgttttagttttagtccc 5959056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 13274249 - 13274289
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtcc 42  Q
    ||||||||||||||||| ||||| ||||||||||||||||||    
T  13274249 ttctcacaatagttatc-ttttacatgttttagttttagtcc 13274289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 13097 - 13055
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  13097 ttctcacaatagttatccttttacatgttttagttttagtccc 13055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 22230 - 22272
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  22230 ttctcacaatagttatccttttacatgttttagttttagtccc 22272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 41326089 - 41326131
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  41326089 ttctcacaatagttatccttttacatgttttagttttagtccc 41326131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 31637762 - 31637802
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtc 41  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  31637762 ttctcataatagttatccttttatatgttttagttttagtc 31637802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 40337107 - 40337065
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    ||||||||||||||||| ||||| |||||||||||||||||||    
T  40337107 ttctcacaatagttatcattttacatgttttagttttagtccc 40337065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 8163684 - 8163644
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtc 41  Q
    ||||||||||||||||| ||||| |||||||||||||||||    
T  8163684 ttctcacaatagttatctttttacatgttttagttttagtc 8163644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 28089182 - 28089224
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    |||| |||||||||||| ||||| |||||||||||||||||||    
T  28089182 ttcttacaatagttatcattttacatgttttagttttagtccc 28089224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 4032368 - 4032326
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  4032368 ttctcacaatagttatctttttatatgttttagttttagtccc 4032326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 444569 - 444611
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    ||||||||||||||||||| ||| |||||||||||||||||||    
T  444569 ttctcacaatagttatcctattacatgttttagttttagtccc 444611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 2814931 - 2814889
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    ||||||||||||||||| ||||| |||||||||||||||||||    
T  2814931 ttctcacaatagttatcattttacatgttttagttttagtccc 2814889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 23774117 - 23774159
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    |||||| ||||||||||||||||||||||||||||||| ||||    
T  23774117 ttctcataatagttatccttttatatgttttagttttaatccc 23774159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 24640393 - 24640351
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    |||||| ||||||||||||| ||||||||||||||||||||||    
T  24640393 ttctcataatagttatccttctatatgttttagttttagtccc 24640351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6200203 - 6200163
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtc 41  Q
    ||||||||||||||||||||||| || ||||||||||||||    
T  6200203 ttctcacaatagttatccttttacatattttagttttagtc 6200163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 34710159 - 34710199
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtc 41  Q
    |||||||| ||||||| ||||||||||||||||||||||||    
T  34710159 ttctcacagtagttattcttttatatgttttagttttagtc 34710199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 1067848 - 1067891
Alignment:
Q  1 ttctcacaatagttatcctttt-atatgttttagttttagtccc 43  Q
    ||||||||||||||| |||||| |||||||||||||||||||||    
T  1067848 ttctcacaatagttaccctttttatatgttttagttttagtccc 1067891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 2993625 - 2993592
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagt 34  Q
    |||||||||||||||||||||||||| |||||||    
T  2993625 ttctcacaatagttatccttttatatcttttagt 2993592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 38451080 - 38451038
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  38451080 ttctcacaatagttatccttttacatgttttagttttagtccc 38451038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 39508357 - 39508315
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    |||||||||||||||| |||||| |||||||||||||||||||    
T  39508357 ttctcacaatagttattcttttacatgttttagttttagtccc 39508315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 3729374 - 3729333
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtcc 42  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  3729374 ttctcacaataattatccttttacatgttttagttttagtcc 3729333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 8159111 - 8159070
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtcc 42  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  8159111 ttctcacaataattatccttttacatgttttagttttagtcc 8159070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 9793671 - 9793634
Alignment:
Q  6 acaatagttatccttttatatgttttagttttagtccc 43  Q
    |||||||||||||||||| |||||||||||||||||||    
T  9793671 acaatagttatccttttacatgttttagttttagtccc 9793634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 21020731 - 21020772
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtcc 42  Q
    ||||| ||||||||||||||||||||| ||||||||||||||    
T  21020731 ttctcgcaatagttatccttttatatgatttagttttagtcc 21020772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 34766925 - 34766885
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtc 41  Q
    |||||||||||||||| |||||| |||||||||||||||||    
T  34766925 ttctcacaatagttattcttttacatgttttagttttagtc 34766885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 20736196 - 20736157
Alignment:
Q  4 tcacaatagttatccttttatatgttttagttttagtccc 43  Q
    |||||||||||||| ||||| |||||||||||||||||||    
T  20736196 tcacaatagttatcattttacatgttttagttttagtccc 20736157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 41929395 - 41929430
Alignment:
Q  7 caatagttatccttttatatgttttagttttagtcc 42  Q
    ||||||||||||||||| ||||||||||||||||||    
T  41929395 caatagttatccttttacatgttttagttttagtcc 41929430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 9793768 - 9793731
Alignment:
Q  6 acaatagttatccttttatatgttttagttttagtccc 43  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  9793768 acaatagttatccttttacttgttttagttttagtccc 9793731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 21583897 - 21583938
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtcc 42  Q
    |||||| |||||||||| ||||| ||||||||||||||||||    
T  21583897 ttctcataatagttatctttttacatgttttagttttagtcc 21583938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 41910256 - 41910219
Alignment:
Q  4 tcacaatagttatccttttatatgttttagttttagtc 41  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  41910256 tcacaatagttatcattttacatgttttagttttagtc 41910219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 21555428 - 21555470
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  21555428 ttctcacaatagttatccttttacatgttttagttttagtccc 21555470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 23249518 - 23249560
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  23249518 ttctcacaatagttatccttttacatgttttagttttagtccc 23249560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 35929755 - 35929797
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  35929755 ttctcacaatagttatcattttatatgttttagttttagtccc 35929797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 36609454 - 36609412
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  36609454 ttctcacaatagttatccttttacatgttttagttttagtccc 36609412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 27733424 - 27733465
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtcc 42  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  27733424 ttctcacaatagttatccttttacatgttttagttttagtcc 27733465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 44243737 - 44243696
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtcc 42  Q
    |||| ||||||||||||||||||||||||||| |||||||||    
T  44243737 ttcttacaatagttatccttttatatgttttaattttagtcc 44243696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 53583511 - 53583470
Alignment:
Q  2 tctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    |||||||||||| ||||||||| |||||||||||||||||||    
T  53583511 tctcacaatagtaatccttttacatgttttagttttagtccc 53583470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 827877 - 827917
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtc 41  Q
    ||||||||||||||||| ||||| |||||||||||||||||    
T  827877 ttctcacaatagttatctttttacatgttttagttttagtc 827917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 12701086 - 12701127
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtcc 42  Q
    |||| ||||||||||| |||||| ||||||||||||||||||    
T  12701086 ttcttacaatagttattcttttacatgttttagttttagtcc 12701127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 35749433 - 35749473
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtc 41  Q
    |||||| |||| ||||| |||||||||||||||||||||||    
T  35749433 ttctcataataattatctttttatatgttttagttttagtc 35749473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 36404263 - 36404221
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  36404263 ttctcacaatagttatccttttacatgttttagttttagtccc 36404221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 46487317 - 46487359
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  46487317 ttctcacaatagttatcattttatatgttttagttttagtccc 46487359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 47599412 - 47599452
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtc 41  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  47599412 ttctcacaatagttatccttttacatgttttagttttagtc 47599452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 35534530 - 35534569
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagt 40  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  35534530 ttctcacaatagttatcattttatatgttttagttttagt 35534569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 39392008 - 39392047
Alignment:
Q  4 tcacaatagttatccttttatatgttttagttttagtccc 43  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  39392008 tcacaatagttatccttttacatgttttagttttagtccc 39392047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 29360530 - 29360572
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    |||||||| |||||||||||||| |||||||||||||||||||    
T  29360530 ttctcacagtagttatccttttacatgttttagttttagtccc 29360572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 45603035 - 45603073
Alignment:
Q  4 tcacaatagttatccttttatatgttttagttttagtcc 42  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  45603035 tcacaatagttatccttttacatgttttagttttagtcc 45603073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 37115928 - 37115887
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtcc 42  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  37115928 ttctcgcaatagttatcattttatatgttttagttttagtcc 37115887  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 3618381 - 3618339
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    ||||||||||| ||||| ||||| |||||||||||||||||||    
T  3618381 ttctcacaatatttatctttttacatgttttagttttagtccc 3618339  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 54883033 - 54882991
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    ||||||||||| |||||||||||  ||||||||||||||||||    
T  54883033 ttctcacaatatttatccttttacgtgttttagttttagtccc 54882991  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 16353527 - 16353494
Alignment:
Q  4 tcacaatagttatccttttatatgttttagtttt 37  Q
    |||||||||||||||||||| |||||||||||||    
T  16353527 tcacaatagttatccttttacatgttttagtttt 16353494  T

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Target: scaffold0302 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18544 - 18503
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtcc 42  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  18544 ttctcacaatagttatccttttacatgttttagttttagtcc 18503  T

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Target: scaffold0025 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 67920 - 67959
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagt 40  Q
    |||| |||||||||||||||||| ||||||||||||||||    
T  67920 ttctaacaatagttatccttttacatgttttagttttagt 67959  T

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Target: scaffold1248 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1248
Description:

Target: scaffold1248; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 1023 - 1057
Alignment:
Q  8 aatagttatccttttatatgttttagttttagtcc 42  Q
    ||||||||| |||||||||||||||||||||||||    
T  1023 aatagttattcttttatatgttttagttttagtcc 1057  T

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Target: scaffold0952 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0952
Description:

Target: scaffold0952; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 1290 - 1256
Alignment:
Q  8 aatagttatccttttatatgttttagttttagtcc 42  Q
    ||||||||| |||||||||||||||||||||||||    
T  1290 aatagttattcttttatatgttttagttttagtcc 1256  T

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Target: scaffold0140 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 21524 - 21566
Alignment:
Q  1 ttctcacaatagttatccttttatatgttttagttttagtccc 43  Q
    ||||||||||||||||  ||||| |||||||||||||||||||    
T  21524 ttctcacaatagttattattttacatgttttagttttagtccc 21566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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