View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20610_low_19 (Length: 239)

Name: NF20610_low_19
Description: NF20610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20610_low_19
NF20610_low_19
[»] scaffold0145 (1 HSPs)
scaffold0145 (1-233)||(12552-12784)
[»] chr4 (5 HSPs)
chr4 (1-233)||(16284933-16285165)
chr4 (76-233)||(18231449-18231604)
chr4 (76-232)||(11555916-11556070)
chr4 (106-219)||(11098355-11098468)
chr4 (1-65)||(11098292-11098356)
[»] chr6 (4 HSPs)
chr6 (1-233)||(10641217-10641449)
chr6 (1-233)||(14970060-14970294)
chr6 (78-233)||(10906699-10906854)
chr6 (76-192)||(9191065-9191181)
[»] chr7 (5 HSPs)
chr7 (76-232)||(22614701-22614857)
chr7 (76-233)||(11655474-11655631)
chr7 (3-233)||(20025970-20026200)
chr7 (118-219)||(13477489-13477596)
chr7 (5-177)||(4531649-4531820)
[»] chr5 (2 HSPs)
chr5 (1-233)||(24831923-24832161)
chr5 (82-217)||(13935715-13935849)
[»] chr3 (6 HSPs)
chr3 (1-233)||(14481523-14481761)
chr3 (17-167)||(17790941-17791091)
chr3 (17-167)||(19099381-19099531)
chr3 (83-143)||(22159871-22159931)
chr3 (83-143)||(21975275-21975335)
chr3 (83-143)||(21997706-21997766)
[»] chr2 (3 HSPs)
chr2 (5-220)||(44586360-44586574)
chr2 (1-109)||(24786268-24786376)
chr2 (82-167)||(16862347-16862432)
[»] scaffold1001 (1 HSPs)
scaffold1001 (76-233)||(1389-1545)
[»] chr1 (1 HSPs)
chr1 (82-195)||(1567041-1567154)


Alignment Details
Target: scaffold0145 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 12784 - 12552
Alignment:
Q  1 tgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatg 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12784 tgagatgaatactaaaataaaataaatggatgttggcatagaatgagtcacgcgtaaggtgtggaataacgacaagataaggtggtgatataagcggatg 12685  T
Q  101 ataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagt 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12684 ataaagagtaatgatggggagtcctataactatgacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagt 12585  T
Q  201 ttgtattataataatgatgagaatgatgatgtc 233  Q
    || ||||||||||||||||||||||||||||||    
T  12584 ttatattataataatgatgagaatgatgatgtc 12552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 16284933 - 16285165
Alignment:
Q  1 tgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatg 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  16284933 tgagatgaatactaaaataaaataaatggatgttggcatagaatgagtcacgcgtaaggtgtggaataacgacaagataaggtggtgatataagtggatg 16285032  T
Q  101 ataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagt 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16285033 ataaagagtaatgatggggagtcctataactatgacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagt 16285132  T
Q  201 ttgtattataataatgatgagaatgatgatgtc 233  Q
    || ||||||||||||||||||||||||||||||    
T  16285133 ttatattataataatgatgagaatgatgatgtc 16285165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 76 - 233
Target Start/End: Original strand, 18231449 - 18231604
Alignment:
Q  76 gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa 175  Q
    |||||||||||||||||| ||| ||||| |||||||||||| ||| ||| ||| || ||||| ||||| ||||||| |||||||||||||||||||||||    
T  18231449 gataaggtggtgatataaacggttgatagagagtaatgatgaggaatcc-ata-ctgtaacaaagagtgatgacgattaatattatatatatgtaaagaa 18231546  T
Q  176 attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc 233  Q
    ||||||||||| | |||||||||  || ||||||||||||||||||||||| ||||||    
T  18231547 attactacgatagaaaatgatgatgttatattataataatgatgagaatgacgatgtc 18231604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 76 - 232
Target Start/End: Complemental strand, 11556070 - 11555916
Alignment:
Q  76 gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa 175  Q
    ||||||||||||||||||  || ||||| ||||||||||||  || ||| ||| || | ||| ||||| ||||||| |||||||||||||||||||||||    
T  11556070 gataaggtggtgatataaatggttgatagagagtaatgatgatgaatcc-ata-ctgtcacaaagagtgatgacgattaatattatatatatgtaaagaa 11555973  T
Q  176 attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgt 232  Q
    ||||||||||| ||||||| |||  || ||||||||||||||||||||||| |||||    
T  11555972 attactacgataggaaatgttgatgttatattataataatgatgagaatgacgatgt 11555916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 106 - 219
Target Start/End: Original strand, 11098355 - 11098468
Alignment:
Q  106 gagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttgta 205  Q
    ||||||||||| |||||||||||| | |||  |||||| ||||||| ||||||||||||||||||||||||||||||   |||||||| ||||  || ||    
T  11098355 gagtaatgatgaggagtcctataattgtaatggagagtgatgacgattaatattatatatatgtaaagaaattactattgtgggaaataatgatgttata 11098454  T
Q  206 ttataataatgatg 219  Q
    ||||||||||||||    
T  11098455 ttataataatgatg 11098468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 11098292 - 11098356
Alignment:
Q  1 tgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtgga 65  Q
    ||||||||||| |||| ||||||||| |||||||  | || || ||||||||| |||||||||||    
T  11098292 tgagatgaataataaagtaaaataaagggatgttgacgtataaggagtcacgcataaggtgtgga 11098356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 141; Significance: 5e-74; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 10641217 - 10641449
Alignment:
Q  1 tgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatg 100  Q
    ||||||||||| ||||||||| |||||||||||| || ||||||||||||| ||| ||| ||||| ||| ||   |||||||||||||||||||||||||    
T  10641217 tgagatgaataataaaataaagtaaatggatgttggcgtagaatgagtcacacgtgaggcgtggattaatgaagagataaggtggtgatataagcggatg 10641316  T
Q  101 ataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagt 200  Q
    ||| |||||||||| | |||||||||||||| | ||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||     
T  10641317 atagagagtaatgacgaggagtcctataactgtgacagagagcgatgacgattaatattatatatatgtaaagaaattactacgatgggaaattatgagg 10641416  T
Q  201 ttgtattataataatgatgagaatgatgatgtc 233  Q
    || ||||||||||||||||||||||||||||||    
T  10641417 ttatattataataatgatgagaatgatgatgtc 10641449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 14970294 - 14970060
Alignment:
Q  1 tgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatg 100  Q
    ||||| ||||| |||||||||||||| | |||||    ||||||||||||| ||||| ||||||| ||| ||   ||||| ||||||||||||  |||||    
T  14970294 tgagaagaataataaaataaaataaaggaatgttgatgtagaatgagtcactcgtaaagtgtggattaatgaagagataaagtggtgatataaatggatg 14970195  T
Q  101 ataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatat--atatgtaaagaaattactacgatgggaaatgatga 198  Q
    ||| |||||||||||| ||||||||| |||| | ||| ||| | ||||||  |||||||||||  |||| || |||||||||  ||||||||||||||||    
T  14970194 atagagagtaatgatgaggagtcctacaactgtgacaaagaatgatgacggttaatattatatatatatttatagaaattaccgcgatgggaaatgatga 14970095  T
Q  199 gtttgtattataataatgatgagaatgatgatgtc 233  Q
      || |||||||||||  |||||||||| ||||||    
T  14970094 tgttatattataataacaatgagaatgacgatgtc 14970060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 78 - 233
Target Start/End: Original strand, 10906699 - 10906854
Alignment:
Q  78 taaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaat 177  Q
    |||||||||||||||| ||| ||| |||||||||||| | ||| ||||||||||   ||||||||| | |  |  ||||||||| ||||||| || | ||    
T  10906699 taaggtggtgatataaacggttgacaaagagtaatgacgaggaatcctataactgcgacagagagtgaagggggttaatattatgtatatgtcaacatat 10906798  T
Q  178 tactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc 233  Q
     | || |||| ||||||||||  || ||||||||||||||||||||||| ||||||    
T  10906799 aaataggatgtgaaatgatgatgttatattataataatgatgagaatgacgatgtc 10906854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 192
Target Start/End: Complemental strand, 9191181 - 9191065
Alignment:
Q  76 gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa 175  Q
    |||||||||||||||||| ||| ||||| |||||||||||| ||| |||||||||| | | | ||||| |||| || | |||| |||||||||| || ||    
T  9191181 gataaggtggtgatataaacggttgatagagagtaatgatgaggaatcctataactgtgataaagagtgatgatgattgatataatatatatgtgaataa 9191082  T
Q  176 attactacgatgggaaa 192  Q
    || | ||||||| ||||    
T  9191081 ataaatacgatgagaaa 9191065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 76 - 232
Target Start/End: Original strand, 22614701 - 22614857
Alignment:
Q  76 gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa 175  Q
    |||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||    
T  22614701 gataaggtggtgatataagcggatgatagagagtattgatgaggagtcctataactatgacagagagtgatgacgattaatattatatatatgtaaagaa 22614800  T
Q  176 attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgt 232  Q
    |||||||||||||||||||||||| || |||||||||||||| |||||||| |||||    
T  22614801 attactacgatgggaaatgatgaggttatattataataatgaagagaatgacgatgt 22614857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 76 - 233
Target Start/End: Complemental strand, 11655631 - 11655474
Alignment:
Q  76 gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa 175  Q
    |||||||||||||||||||||||||||||||| || ||||| ||||||||||| || | ||||||||| | || || |||||||||||||||||||||||    
T  11655631 gataaggtggtgatataagcggatgataaagaatattgatgaggagtcctatagctgtgacagagagtgacgatgattaatattatatatatgtaaagaa 11655532  T
Q  176 attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc 233  Q
    ||||||||||||| |||||||||| || |||||||||||||| |||||||| ||||||    
T  11655531 attactacgatggaaaatgatgaggttatattataataatgaagagaatgacgatgtc 11655474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 233
Target Start/End: Complemental strand, 20026200 - 20025970
Alignment:
Q  3 agatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgat 102  Q
    ||||||||| ||||||| |||||| |||||||  | |  ||||||||||||||||||||| || ||| ||   |||||||| ||||||||| |  |||||    
T  20026200 agatgaataataaaatagaataaagggatgttgacgtcaaatgagtcacgcgtaaggtgttgattaatgaagagataaggttgtgatataaacatatgat 20026101  T
Q  103 aaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagttt 202  Q
    | ||| |||||| | ||||||||| |||||| ||| ||||| ||||||| | |||||||||||||||||||||||||| | ||||| |||||||||  ||    
T  20026100 agagaataatgaagaggagtcctacaactatgacaaagagtgatgacgattcatattatatatatgtaaagaaattaccatgatggcaaatgatgatgtt 20026001  T
Q  203 gtattataataatgatgagaatgatgatgtc 233  Q
     |||||||||||  |||| ||||||||||||    
T  20026000 atattataataacaatgacaatgatgatgtc 20025970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 219
Target Start/End: Original strand, 13477489 - 13477596
Alignment:
Q  118 ggagtcctataactataacagagagtaatgacgagtaatattata------tatatgtaaagaaattactacgatgggaaatgatgagtttgtattataa 211  Q
    |||||||||||||| ||||| ||||| ||||||| ||||||||||      |||||||||||||||||||||||||||||| |||||  || ||||||||    
T  13477489 ggagtcctataactgtaacaaagagtgatgacgattaatattatatatatatatatgtaaagaaattactacgatgggaaaggatgatgttatattataa 13477588  T
Q  212 taatgatg 219  Q
    ||||||||    
T  13477589 taatgatg 13477596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 177
Target Start/End: Original strand, 4531649 - 4531820
Alignment:
Q  5 atgaatactaaaataaaataaatggatgttagcatagaa-tgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgata 103  Q
    ||||||| |||||||||||| | || |||| || || || ||||||||| ||||||  |||| ||| ||   |||||||||||||||||| ||| |||||    
T  4531649 atgaataataaaataaaatagaggggtgttggcgtataaatgagtcacgtgtaagggttggattaatgaagagataaggtggtgatataaacggttgata 4531748  T
Q  104 aagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaat 177  Q
     |||||||||||| ||| ||| |||| | | ||  ||||| ||||| | | |||||||||||||||||| ||||    
T  4531749 gagagtaatgatgaggaatcc-ataa-tgtgacgaagagtgatgacaattgatattatatatatgtaaataaat 4531820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 24831923 - 24832161
Alignment:
Q  1 tgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatg 100  Q
    ||||||||||| |||||||||||||| ||||||| || ||||||||||||||||||||| || || ||| ||   |||| | ||||||| ||||||||||    
T  24831923 tgagatgaataataaaataaaataaagggatgttggcgtagaatgagtcacgcgtaaggagttgactaatgaagagatacgatggtgatgtaagcggatg 24832022  T
Q  101 ataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattat------atatatgtaaagaaattactacgatgggaaatg 194  Q
    ||| |||||||||||| |||||||||||| | | ||| ||||| |||| || |||||||||      |||||||||||||||||||||||||| ||||||    
T  24832023 atagagagtaatgatgaggagtcctataattgtgacaaagagtgatgatgattaatattatatatacatatatgtaaagaaattactacgatgagaaatg 24832122  T
Q  195 atgagtttgtattataataatgatgagaatgatgatgtc 233  Q
    ||||| || || ||||||| |||||||||||| ||||||    
T  24832123 atgaggttatactataatattgatgagaatgacgatgtc 24832161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 217
Target Start/End: Complemental strand, 13935849 - 13935715
Alignment:
Q  82 gtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattact 181  Q
    |||||||||||| ||| ||||| |||||||||||  ||| |||||||||  | ||| ||||| ||||| | | ||| ||||| ||||||||  ||| | |    
T  13935849 gtggtgatataaacggttgatagagagtaatgattaggaatcctataacggtgacaaagagtgatgacaattgatactatatctatgtaaatgaataaat 13935750  T
Q  182 acgatgggaaatgatgagtttgtattataataatga 217  Q
    ||||| |||||| ||||  || ||||||||||||||    
T  13935749 acgat-ggaaataatgatgttatattataataatga 13935715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 14481523 - 14481761
Alignment:
Q  1 tgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatg 100  Q
    ||||||||||| |||||||||||||| ||||||| || ||||||||||||||||||||| ||||| ||| ||   ||||   ||||||| ||||||||||    
T  14481523 tgagatgaataataaaataaaataaagggatgttggcgtagaatgagtcacgcgtaaggagtggattaatgaagagatacaatggtgatgtaagcggatg 14481622  T
Q  101 ataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatat------tatatatatgtaaagaaattactacgatgggaaatg 194  Q
    ||| |||||||||||| |||||||||||||| | ||| ||||| |||| || ||||||      |||||||||||||||||||||||||||||||| |||    
T  14481623 atagagagtaatgatgaggagtcctataactgtgacaaagagtgatgatgattaatattatatatatatatatgtaaagaaattactacgatgggacatg 14481722  T
Q  195 atgagtttgtattataataatgatgagaatgatgatgtc 233  Q
    ||||| || || ||||||| ||||||| |||| ||||||    
T  14481723 atgaggttatactataatattgatgaggatgacgatgtc 14481761  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 17791091 - 17790941
Alignment:
Q  17 ataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatg 116  Q
    ||||| |||| |||||| ||| ||||||||| |||| |||| ||||||| ||| ||   ||||||||| || ||||||||||||| | ||||||||||||    
T  17791091 ataaagtaaagggatgtcagcgtagaatgagccacgagtaaagtgtggattaatgaagagataaggtgatggtataagcggatgaaagagagtaatgatg 17790992  T
Q  117 gggagtcctataactataacagagagtaatgacgagtaatattatatatat 167  Q
     |||||||||||||| | ||||||||| |||| || |||||||||||||||    
T  17790991 aggagtcctataactttgacagagagtgatgatgattaatattatatatat 17790941  T

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Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 19099531 - 19099381
Alignment:
Q  17 ataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatg 116  Q
    ||||| |||| |||||| ||| ||||||||| |||| |||| ||||||| ||| ||   ||||||||| || ||||||||||||| | ||||||||||||    
T  19099531 ataaagtaaagggatgtcagcgtagaatgagccacgagtaaagtgtggattaatgaagagataaggtgatggtataagcggatgaaagagagtaatgatg 19099432  T
Q  117 gggagtcctataactataacagagagtaatgacgagtaatattatatatat 167  Q
     |||||||||||||| | ||||||||| |||| || |||||||||||||||    
T  19099431 aggagtcctataactttgacagagagtgatgatgattaatattatatatat 19099381  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 22159931 - 22159871
Alignment:
Q  83 tggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagt 143  Q
    ||||||||||| ||| ||||| |||||||||||| ||| |||||||||||| ||| |||||    
T  22159931 tggtgatataaacggttgatagagagtaatgatgaggaatcctataactatgacaaagagt 22159871  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 21975335 - 21975275
Alignment:
Q  83 tggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagt 143  Q
    ||||||||||| ||| ||||| |||||||||||| ||| ||| |||||||| ||| |||||    
T  21975335 tggtgatataaacggttgatagagagtaatgatgaggaatccaataactatgacaaagagt 21975275  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 21997766 - 21997706
Alignment:
Q  83 tggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagt 143  Q
    ||||||||||| ||| ||||| |||||||||||| ||| ||| |||||||| ||| |||||    
T  21997766 tggtgatataaacggttgatagagagtaatgatgaggaatccaataactatgacaaagagt 21997706  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 44586360 - 44586574
Alignment:
Q  5 atgaatactaaaataaaataaatggatgttagcatagaa-tgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgata 103  Q
    ||||||| | |||||||||| | |||||||  ||||||| ||||||| ||||||||  |||| |||  |   |||||||||||||||||| ||| |||||    
T  44586360 atgaataatgaaataaaatagagggatgttgacatagaaatgagtcatgcgtaagggttggattaataaagagataaggtggtgatataaacggttgata 44586459  T
Q  104 aagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttg 203  Q
     |||||||||||| ||| ||| ||| || ||||| ||||| ||||||| || |||||||||||||||||||||||||||||||  ||||||||||  ||     
T  44586460 gagagtaatgatgaggaatcc-ata-ctgtaacaaagagtgatgacgattagtattatatatatgtaaagaaattactacgatatgaaatgatgatgtta 44586557  T
Q  204 tattataataatgatga 220  Q
     ||||||||||| ||||    
T  44586558 aattataataataatga 44586574  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 24786376 - 24786268
Alignment:
Q  1 tgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatg 100  Q
    ||||||||||| |||||||||||||| |||||||  | |||||| |||||| |||||||| | || ||| || | || ||||||  ||||||| || |||    
T  24786376 tgagatgaataataaaataaaataaagggatgttgacgtagaataagtcacacgtaaggtatagattaatgaaaagagaaggtgaagatataaacgaatg 24786277  T
Q  101 ataaagagt 109  Q
    ||| |||||    
T  24786276 atagagagt 24786268  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 167
Target Start/End: Complemental strand, 16862432 - 16862347
Alignment:
Q  82 gtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatat 167  Q
    ||||| |||||| ||| ||||||||| |||||||| ||| ||||||||||| |||| || ||   || || |||||||||||||||    
T  16862432 gtggtaatataaacggttgataaagactaatgatgaggaatcctataactacaacaaagggtgtcgatgattaatattatatatat 16862347  T

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Target: scaffold1001 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 233
Target Start/End: Complemental strand, 1545 - 1389
Alignment:
Q  76 gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa 175  Q
    ||||| ||| ||| ||| |||||||||| |||||| | ||| |||||||||||||  | | ||||||| ||||| | ||||||| ||||| || ||| ||    
T  1545 gataatgtgatgacatatgcggatgatatagagtatttatgaggagtcctataaccgtgaaagagagtgatgactattaatatt-tatatgtggaaataa 1447  T
Q  176 attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc 233  Q
    ||||| || |||| |||||||||| || ||||||||||||||||||||||| ||||||    
T  1446 attacaacaatggaaaatgatgaggttatattataataatgatgagaatgacgatgtc 1389  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 195
Target Start/End: Original strand, 1567041 - 1567154
Alignment:
Q  82 gtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattact 181  Q
    |||||||||||| |||  |||| || ||||| ||| ||| || ||||| | | ||| ||||| ||||||| | |||||||||||||||||| |||| | |    
T  1567041 gtggtgatataaacggtggatagagggtaataatgaggaatcatataattgtgacaaagagtgatgacgattgatattatatatatgtaaacaaataaat 1567140  T
Q  182 acgatgggaaatga 195  Q
    |||||| |||||||    
T  1567141 acgatgagaaatga 1567154  T

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