View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20610_low_3 (Length: 678)
Name: NF20610_low_3
Description: NF20610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20610_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 629; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 7 - 659
Target Start/End: Original strand, 5299715 - 5300367
Alignment:
| Q |
7 |
tcgaagaaaattatatcgacggaggaatcatgtggggtgaaaatagacaataatttcaactaatttgtgacacctctattatactcttttccttgctcta |
106 |
Q |
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||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5299715 |
tcgaacaaaattatattgacggaggaatcatgtggggtgaaaatagacaataatttcaactaatttgtgacacctctattatactcttttccttgctcta |
5299814 |
T |
|
| Q |
107 |
caaatcaacaaaaggaaacaatcatttgtatcaatgtattgatagttgcacataccaagtgataactacatttccaaatgacatatcaaagtttagccgc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5299815 |
caaatcaacaaaaggaaacaatcatttgtatcaatgtattgatagttgcacataccaagtgataactacatttccaaatgacatatcaaagtttagccac |
5299914 |
T |
|
| Q |
207 |
atcctttgaaactttgctgcaggcccttgagggctagttcttatctacttcgaaaataattttcttcagtaagttcttatagctcaaatctgatacttca |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5299915 |
atcctttgaaactttgctgcaggcccttgagggctagttcttatctacttcgaaaataattttcttcagtaagtttttatagctcaaatctgatacttca |
5300014 |
T |
|
| Q |
307 |
agtctcagttcaataaatctactaatccaactaacagacatgtaaaaatattaactggagaaaacaacacttcaagaacaaagtctaaacatatactcaa |
406 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5300015 |
agtctcagttcaataaatctactaatcaaactaacagacatgtaaaaatattaactggagaaaacaacacttcaagaacaaagtctaaacatatactcaa |
5300114 |
T |
|
| Q |
407 |
aatactttgtatttctcaatataaaaaatataaatccaataatctatattagatttcattttaatgcaatcctctcatgtctcatgaattcaataatcaa |
506 |
Q |
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| T |
5300115 |
aatactttgtatttctcaatataaaaaatataaatccaataatctatattagatttcattttaatgcaatcctctcatgtctcatgaattcaataatcaa |
5300214 |
T |
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| Q |
507 |
tgattctttccattcttataagcaaacagtcacaattatgcataatctcaaaatatattggtgtctgtagagaaaacaagggacaacgaacaactcaatt |
606 |
Q |
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| T |
5300215 |
tgattctttccattcttataagcaaacagtcacaattatgcataatctcaaaatatattggtgtctgtagagaaaacaagggacaacgaacaactcaatt |
5300314 |
T |
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| Q |
607 |
tcatttgcaaagggttcgcagtataactgcatttgcaataacaatttcatatc |
659 |
Q |
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| T |
5300315 |
tcatttgcaaagggttcgcagtataaccgcatttgcaataacaatttcatatc |
5300367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 426 - 601
Target Start/End: Complemental strand, 15622051 - 15621876
Alignment:
| Q |
426 |
tataaaaaatataaatccaataatctatattagatttcattttaatgcaatcctctcatgtctcatgaattcaataatcaatgattctttccattcttat |
525 |
Q |
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||||||||||||||||||| ||||||| || |||| ||||||| | ||||||||||||||||||||||||| |||||||||||||||| || | |||| |
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| T |
15622051 |
tataaaaaatataaatccagtaatctagcctaaattttattttaaagtaatcctctcatgtctcatgaattcattaatcaatgattcttttcaattttat |
15621952 |
T |
|
| Q |
526 |
aagcaaacagtcacaattatgcataatctcaaaatatattggtgtctgtagagaaaacaagggacaacgaacaact |
601 |
Q |
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||||||| ||||||||||||||||||| |||||||||| || | |||| |||||||||||||||| |||||||| |
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| T |
15621951 |
aagcaaatggtcacaattatgcataatcataaaatatattagtatgtgtaaagaaaacaagggacaaggaacaact |
15621876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 544 - 600
Target Start/End: Complemental strand, 20684259 - 20684203
Alignment:
| Q |
544 |
atgcataatctcaaaatatattggtgtctgtagagaaaacaagggacaacgaacaac |
600 |
Q |
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||||||||||||||||||||||||| | ||| | ||||||||||||||| |||||| |
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| T |
20684259 |
atgcataatctcaaaatatattggtatatgtggttaaaacaagggacaacaaacaac |
20684203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 20667404 - 20667355
Alignment:
| Q |
83 |
tattatactcttttccttgctctacaaatcaacaaaaggaaacaatcattt |
133 |
Q |
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|||||||||| |||||||||||||||||||| | |||||||||||||||| |
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| T |
20667404 |
tattatactcatttccttgctctacaaatcagc-gaaggaaacaatcattt |
20667355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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