View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20610_low_4 (Length: 628)
Name: NF20610_low_4
Description: NF20610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20610_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 19 - 402
Target Start/End: Complemental strand, 27883313 - 27882936
Alignment:
| Q |
19 |
actaatgtgggaccggtgaattcggtttatcgtgtgaatgtagagtcgcagattaagggggtaacagtgacggtgaggccgtcaaagcttgttttcacgg |
118 |
Q |
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| T |
27883313 |
actaatgtgggaccggtgaattcggtttatcgtgtgaatgtagagtcgcagattaagggggtaacagtgacggtgaggccgtcaaagcttgttttcacgg |
27883214 |
T |
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| Q |
119 |
agggagtgaagaagaggagttatgttgtgacgttaacggcggatacccgaaacatgaagatggatccttctggagcggttttcgggtcgcttacgtggac |
218 |
Q |
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| T |
27883213 |
agggagtgaagaagaggagttatgttgtgacggtaacggcggatacccgaaacatgaagatggatccttctggagcggttttcgggtcgcttacgtggac |
27883114 |
T |
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| Q |
219 |
ggatggtaaacatgtggttcggagccccattgtcgttactcaaatagaaccgttgtagaggaggacaagacatgaggttcgacttcgatcatgttgtttt |
318 |
Q |
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| T |
27883113 |
ggatggtaaacatgtggttcggagccccattgtcgttactcaaatagaaccgttgtagaggaggacaagacatgaggt------tcgatcatgttgtttt |
27883020 |
T |
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| Q |
319 |
gatcgatgccacacgtcacgtgtgaatggtgcctcattgaattgccacgcggagtaatactactagactacaaaatatctttag |
402 |
Q |
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| T |
27883019 |
gatcgatgccacacgtcacgtgtgaatggtgcctcattgaattgccacgcggagtaatactactagactacaaaatatctttag |
27882936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 493 - 618
Target Start/End: Complemental strand, 27882845 - 27882720
Alignment:
| Q |
493 |
acttcagcttgtactatttctagacttttagatgtctagttatatagatcataaagaaatttataggataagttatgatttgtgatttccattttacact |
592 |
Q |
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| T |
27882845 |
acttcagcttgtactatttctagacttttagatgtctagttatatagatcataaagaaatttataggataagttatgatttgtgatttccattttacacc |
27882746 |
T |
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| Q |
593 |
gttctttaactttagtttgacctatg |
618 |
Q |
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| T |
27882745 |
gttctttaactttagtttgacctatg |
27882720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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